Study run-b1
Study informations
127 subnetworks in total page | file
236 genes associated page | file
Enriched GO terms page
General informations
General Index page
Study Index page
Subnetwork 57804-7-real
score
| Dataset | Score | P-val 1 | P-val 2 | P-val 3 |
|---|
| Desmedt | 0.1350 | 1.204e-02 | 4.165e-03 | 6.748e-02 |
|---|
| IPC-NIBC-129 | 0.2267 | 2.736e-02 | 2.009e-02 | 1.329e-01 |
|---|
| Ivshina_GPL96-GPL97 | 0.2379 | 1.892e-02 | 1.287e-02 | 2.143e-01 |
|---|
| Loi_GPL570 | 0.3200 | 4.340e-02 | 5.821e-02 | 2.007e-01 |
|---|
| Loi_GPL96-GPL97 | 0.1586 | 3.902e-02 | 2.970e-02 | 4.830e-01 |
|---|
| Pawitan_GPL96-GPL97 | 0.2953 | 8.357e-02 | 4.324e-02 | 4.422e-01 |
|---|
| Schmidt | 0.2730 | 3.196e-02 | 3.378e-02 | 1.986e-01 |
|---|
| Sotiriou | 0.2547 | 1.235e-01 | 5.654e-02 | 6.370e-01 |
|---|
| Wang | 0.1804 | 6.689e-02 | 5.075e-02 | 2.245e-01 |
|---|
| Zhang | 0.2714 | 1.166e-02 | 6.042e-03 | 5.295e-02 |
|---|
Expression data for subnetwork 57804-7-real in each dataset
Desmedt |
IPC-NIBC-129 |
Ivshina_GPL96-GPL97 |
Loi_GPL570 |
Loi_GPL96-GPL97 |
Pawitan_GPL96-GPL97 |
Schmidt |
Sotiriou |
Wang |
Zhang |
Subnetwork structure for each dataset
- Desmedt
Score for each gene in subnetwork 57804-7-real in each dataset
| Gene Symbol | Links | Frequency | Frequency Rank | Subnetwork score rank | Global rank |
Desmedt | IPC-NIBC-129 | Ivshina_GPL96-GPL97 | Loi_GPL570 | Loi_GPL96-GPL97 | Pawitan_GPL96-GPL97 | Schmidt | Sotiriou | Wang | Zhang |
|---|
| pold4 |   | 1 | 90 | 87 | 98 | 0.090 | -0.087 | 0.128 | 0.090 | 0.120 | 0.132 | -0.117 | 0.069 | -0.034 | 0.017 |
|---|
| pcna | | 39 | 3 | 8 | 3 | 0.096 | 0.202 | 0.109 | 0.180 | 0.118 | 0.256 | 0.151 | 0.059 | 0.162 | 0.123 |
|---|
| ccnd1 | | 97 | 2 | 8 | 2 | 0.127 | -0.183 | 0.062 | 0.190 | 0.157 | 0.105 | -0.107 | 0.174 | 0.106 | 0.144 |
|---|
| calm1 | | 16 | 10 | 35 | 19 | 0.038 | 0.023 | 0.171 | 0.277 | 0.113 | 0.007 | 0.171 | 0.112 | 0.087 | 0.162 |
|---|
| sp1 | | 31 | 5 | 16 | 8 | 0.054 | 0.186 | 0.147 | 0.242 | 0.125 | 0.202 | 0.284 | 0.227 | 0.194 | 0.091 |
|---|
| e2f3 | | 3 | 39 | 87 | 68 | -0.054 | 0.341 | 0.099 | 0.140 | 0.072 | 0.097 | 0.340 | 0.081 | 0.017 | 0.032 |
|---|
| cdc2 | | 99 | 1 | 1 | 1 | 0.073 | 0.247 | 0.206 | 0.172 | 0.247 | 0.282 | 0.226 | 0.221 | 0.067 | 0.297 |
|---|
| hdac2 | | 16 | 10 | 64 | 39 | 0.012 | 0.245 | 0.030 | 0.077 | 0.070 | 0.183 | 0.222 | -0.058 | 0.086 | 0.133 |
|---|
GO Enrichment output for subnetwork 57804-7-real in each dataset
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| nucleotide-excision repair. DNA gap filling | GO:0006297 |  | 5.09E-07 | 1.171E-03 |
|---|
| positive regulation of cell cycle | GO:0045787 | | 1.266E-05 | 0.01455722 |
|---|
| nucleotide-excision repair | GO:0006289 | | 1.963E-05 | 0.01504664 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 2.096E-05 | 0.01205385 |
|---|
| positive regulation of endothelial cell proliferation | GO:0001938 | | 5.477E-05 | 0.02519411 |
|---|
| histone deacetylation | GO:0016575 | | 5.477E-05 | 0.02099509 |
|---|
| negative regulation of cell cycle process | GO:0010948 | | 1.043E-04 | 0.03427185 |
|---|
| protein amino acid deacetylation | GO:0006476 | | 1.191E-04 | 0.03425095 |
|---|
| cellular response to unfolded protein | GO:0034620 | | 1.191E-04 | 0.03044529 |
|---|
| regulation of mitotic metaphase/anaphase transition | GO:0030071 | | 1.517E-04 | 0.03489336 |
|---|
| response to endoplasmic reticulum stress | GO:0034976 | | 2.078E-04 | 0.04345934 |
|---|
IPC-NIBC-129 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| nucleotide-excision repair. DNA gap filling | GO:0006297 | | 8.491E-08 | 2.074E-04 |
|---|
| positive regulation of cell cycle | GO:0045787 | | 2.593E-06 | 3.167E-03 |
|---|
| meiotic chromosome segregation | GO:0045132 | | 3.005E-06 | 2.447E-03 |
|---|
| nucleotide-excision repair | GO:0006289 | | 4.372E-06 | 2.67E-03 |
|---|
| establishment of spindle localization | GO:0051293 | | 4.506E-06 | 2.202E-03 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 8.405E-06 | 3.422E-03 |
|---|
| positive regulation of endothelial cell proliferation | GO:0001938 | | 1.649E-05 | 5.756E-03 |
|---|
| histone deacetylation | GO:0016575 | | 3.144E-05 | 9.602E-03 |
|---|
| negative regulation of cell cycle process | GO:0010948 | | 4.07E-05 | 0.011048 |
|---|
| protein amino acid deacetylation | GO:0006476 | | 5.68E-05 | 0.01387717 |
|---|
| cellular response to unfolded protein | GO:0034620 | | 5.68E-05 | 0.01261561 |
|---|
Ivshina_GPL96-GPL97 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| nucleotide-excision repair. DNA gap filling | GO:0006297 | | 1.395E-07 | 3.355E-04 |
|---|
| meiotic chromosome segregation | GO:0045132 | | 4.185E-06 | 5.034E-03 |
|---|
| positive regulation of cell cycle | GO:0045787 | | 4.249E-06 | 3.408E-03 |
|---|
| establishment of spindle localization | GO:0051293 | | 6.274E-06 | 3.774E-03 |
|---|
| nucleotide-excision repair | GO:0006289 | | 6.788E-06 | 3.266E-03 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 1.17E-05 | 4.693E-03 |
|---|
| positive regulation of endothelial cell proliferation | GO:0001938 | | 2.296E-05 | 7.892E-03 |
|---|
| histone deacetylation | GO:0016575 | | 4.376E-05 | 0.01316193 |
|---|
| negative regulation of cell cycle process | GO:0010948 | | 5.664E-05 | 0.01514156 |
|---|
| cellular response to unfolded protein | GO:0034620 | | 7.116E-05 | 0.01712081 |
|---|
| protein amino acid deacetylation | GO:0006476 | | 7.903E-05 | 0.01728686 |
|---|
Loi_GPL570 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| nucleotide-excision repair. DNA gap filling | GO:0006297 | | 8.491E-08 | 2.074E-04 |
|---|
| positive regulation of cell cycle | GO:0045787 | | 2.593E-06 | 3.167E-03 |
|---|
| meiotic chromosome segregation | GO:0045132 | | 3.005E-06 | 2.447E-03 |
|---|
| nucleotide-excision repair | GO:0006289 | | 4.372E-06 | 2.67E-03 |
|---|
| establishment of spindle localization | GO:0051293 | | 4.506E-06 | 2.202E-03 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 8.405E-06 | 3.422E-03 |
|---|
| positive regulation of endothelial cell proliferation | GO:0001938 | | 1.649E-05 | 5.756E-03 |
|---|
| histone deacetylation | GO:0016575 | | 3.144E-05 | 9.602E-03 |
|---|
| negative regulation of cell cycle process | GO:0010948 | | 4.07E-05 | 0.011048 |
|---|
| protein amino acid deacetylation | GO:0006476 | | 5.68E-05 | 0.01387717 |
|---|
| cellular response to unfolded protein | GO:0034620 | | 5.68E-05 | 0.01261561 |
|---|
Loi_GPL96-GPL97 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| nucleotide-excision repair. DNA gap filling | GO:0006297 | | 1.395E-07 | 3.355E-04 |
|---|
| meiotic chromosome segregation | GO:0045132 | | 4.185E-06 | 5.034E-03 |
|---|
| positive regulation of cell cycle | GO:0045787 | | 4.249E-06 | 3.408E-03 |
|---|
| establishment of spindle localization | GO:0051293 | | 6.274E-06 | 3.774E-03 |
|---|
| nucleotide-excision repair | GO:0006289 | | 6.788E-06 | 3.266E-03 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 1.17E-05 | 4.693E-03 |
|---|
| positive regulation of endothelial cell proliferation | GO:0001938 | | 2.296E-05 | 7.892E-03 |
|---|
| histone deacetylation | GO:0016575 | | 4.376E-05 | 0.01316193 |
|---|
| negative regulation of cell cycle process | GO:0010948 | | 5.664E-05 | 0.01514156 |
|---|
| cellular response to unfolded protein | GO:0034620 | | 7.116E-05 | 0.01712081 |
|---|
| protein amino acid deacetylation | GO:0006476 | | 7.903E-05 | 0.01728686 |
|---|
Pawitan_GPL96-GPL97 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| nucleotide-excision repair. DNA gap filling | GO:0006297 | | 1.395E-07 | 3.355E-04 |
|---|
| meiotic chromosome segregation | GO:0045132 | | 4.185E-06 | 5.034E-03 |
|---|
| positive regulation of cell cycle | GO:0045787 | | 4.249E-06 | 3.408E-03 |
|---|
| establishment of spindle localization | GO:0051293 | | 6.274E-06 | 3.774E-03 |
|---|
| nucleotide-excision repair | GO:0006289 | | 6.788E-06 | 3.266E-03 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 1.17E-05 | 4.693E-03 |
|---|
| positive regulation of endothelial cell proliferation | GO:0001938 | | 2.296E-05 | 7.892E-03 |
|---|
| histone deacetylation | GO:0016575 | | 4.376E-05 | 0.01316193 |
|---|
| negative regulation of cell cycle process | GO:0010948 | | 5.664E-05 | 0.01514156 |
|---|
| cellular response to unfolded protein | GO:0034620 | | 7.116E-05 | 0.01712081 |
|---|
| protein amino acid deacetylation | GO:0006476 | | 7.903E-05 | 0.01728686 |
|---|
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| nucleotide-excision repair. DNA gap filling | GO:0006297 | | 5.09E-07 | 1.171E-03 |
|---|
| positive regulation of cell cycle | GO:0045787 | | 1.266E-05 | 0.01455722 |
|---|
| nucleotide-excision repair | GO:0006289 | | 1.963E-05 | 0.01504664 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 2.096E-05 | 0.01205385 |
|---|
| positive regulation of endothelial cell proliferation | GO:0001938 | | 5.477E-05 | 0.02519411 |
|---|
| histone deacetylation | GO:0016575 | | 5.477E-05 | 0.02099509 |
|---|
| negative regulation of cell cycle process | GO:0010948 | | 1.043E-04 | 0.03427185 |
|---|
| protein amino acid deacetylation | GO:0006476 | | 1.191E-04 | 0.03425095 |
|---|
| cellular response to unfolded protein | GO:0034620 | | 1.191E-04 | 0.03044529 |
|---|
| regulation of mitotic metaphase/anaphase transition | GO:0030071 | | 1.517E-04 | 0.03489336 |
|---|
| response to endoplasmic reticulum stress | GO:0034976 | | 2.078E-04 | 0.04345934 |
|---|
Sotiriou file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| nucleotide-excision repair. DNA gap filling | GO:0006297 | | 5.09E-07 | 1.171E-03 |
|---|
| positive regulation of cell cycle | GO:0045787 | | 1.266E-05 | 0.01455722 |
|---|
| nucleotide-excision repair | GO:0006289 | | 1.963E-05 | 0.01504664 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 2.096E-05 | 0.01205385 |
|---|
| positive regulation of endothelial cell proliferation | GO:0001938 | | 5.477E-05 | 0.02519411 |
|---|
| histone deacetylation | GO:0016575 | | 5.477E-05 | 0.02099509 |
|---|
| negative regulation of cell cycle process | GO:0010948 | | 1.043E-04 | 0.03427185 |
|---|
| protein amino acid deacetylation | GO:0006476 | | 1.191E-04 | 0.03425095 |
|---|
| cellular response to unfolded protein | GO:0034620 | | 1.191E-04 | 0.03044529 |
|---|
| regulation of mitotic metaphase/anaphase transition | GO:0030071 | | 1.517E-04 | 0.03489336 |
|---|
| response to endoplasmic reticulum stress | GO:0034976 | | 2.078E-04 | 0.04345934 |
|---|
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| nucleotide-excision repair. DNA gap filling | GO:0006297 | | 5.09E-07 | 1.171E-03 |
|---|
| positive regulation of cell cycle | GO:0045787 | | 1.266E-05 | 0.01455722 |
|---|
| nucleotide-excision repair | GO:0006289 | | 1.963E-05 | 0.01504664 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 2.096E-05 | 0.01205385 |
|---|
| positive regulation of endothelial cell proliferation | GO:0001938 | | 5.477E-05 | 0.02519411 |
|---|
| histone deacetylation | GO:0016575 | | 5.477E-05 | 0.02099509 |
|---|
| negative regulation of cell cycle process | GO:0010948 | | 1.043E-04 | 0.03427185 |
|---|
| protein amino acid deacetylation | GO:0006476 | | 1.191E-04 | 0.03425095 |
|---|
| cellular response to unfolded protein | GO:0034620 | | 1.191E-04 | 0.03044529 |
|---|
| regulation of mitotic metaphase/anaphase transition | GO:0030071 | | 1.517E-04 | 0.03489336 |
|---|
| response to endoplasmic reticulum stress | GO:0034976 | | 2.078E-04 | 0.04345934 |
|---|
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| nucleotide-excision repair. DNA gap filling | GO:0006297 | | 5.09E-07 | 1.171E-03 |
|---|
| positive regulation of cell cycle | GO:0045787 | | 1.266E-05 | 0.01455722 |
|---|
| nucleotide-excision repair | GO:0006289 | | 1.963E-05 | 0.01504664 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 2.096E-05 | 0.01205385 |
|---|
| positive regulation of endothelial cell proliferation | GO:0001938 | | 5.477E-05 | 0.02519411 |
|---|
| histone deacetylation | GO:0016575 | | 5.477E-05 | 0.02099509 |
|---|
| negative regulation of cell cycle process | GO:0010948 | | 1.043E-04 | 0.03427185 |
|---|
| protein amino acid deacetylation | GO:0006476 | | 1.191E-04 | 0.03425095 |
|---|
| cellular response to unfolded protein | GO:0034620 | | 1.191E-04 | 0.03044529 |
|---|
| regulation of mitotic metaphase/anaphase transition | GO:0030071 | | 1.517E-04 | 0.03489336 |
|---|
| response to endoplasmic reticulum stress | GO:0034976 | | 2.078E-04 | 0.04345934 |
|---|
