Study run-b1
Study informations
127 subnetworks in total page | file
236 genes associated page | file
Enriched GO terms page
General informations
General Index page
Study Index page
Subnetwork 5716-7-real
score
| Dataset | Score | P-val 1 | P-val 2 | P-val 3 |
|---|
| Desmedt | 0.1587 | 1.170e-02 | 4.003e-03 | 6.596e-02 |
|---|
| IPC-NIBC-129 | 0.2361 | 6.369e-02 | 5.273e-02 | 2.979e-01 |
|---|
| Ivshina_GPL96-GPL97 | 0.2393 | 1.568e-02 | 1.033e-02 | 1.836e-01 |
|---|
| Loi_GPL570 | 0.2539 | 1.229e-01 | 1.514e-01 | 4.376e-01 |
|---|
| Loi_GPL96-GPL97 | 0.1759 | 1.592e-02 | 9.146e-03 | 2.200e-01 |
|---|
| Pawitan_GPL96-GPL97 | 0.3346 | 2.970e-02 | 1.147e-02 | 2.060e-01 |
|---|
| Schmidt | 0.1947 | 1.047e-02 | 1.135e-02 | 7.562e-02 |
|---|
| Sotiriou | 0.3249 | 9.380e-02 | 3.820e-02 | 5.474e-01 |
|---|
| Wang | 0.1502 | 1.118e-01 | 9.672e-02 | 3.265e-01 |
|---|
| Zhang | 0.3648 | 6.004e-03 | 2.880e-03 | 3.073e-02 |
|---|
Expression data for subnetwork 5716-7-real in each dataset
Desmedt |
IPC-NIBC-129 |
Ivshina_GPL96-GPL97 |
Loi_GPL570 |
Loi_GPL96-GPL97 |
Pawitan_GPL96-GPL97 |
Schmidt |
Sotiriou |
Wang |
Zhang |
Subnetwork structure for each dataset
- Desmedt
Score for each gene in subnetwork 5716-7-real in each dataset
| Gene Symbol | Links | Frequency | Frequency Rank | Subnetwork score rank | Global rank |
Desmedt | IPC-NIBC-129 | Ivshina_GPL96-GPL97 | Loi_GPL570 | Loi_GPL96-GPL97 | Pawitan_GPL96-GPL97 | Schmidt | Sotiriou | Wang | Zhang |
|---|
| cdkn3 |   | 18 | 9 | 26 | 16 | 0.114 | 0.269 | 0.199 | 0.136 | 0.193 | 0.323 | 0.186 | 0.198 | 0.134 | 0.271 |
|---|
| tsc1 | | 31 | 5 | 26 | 15 | 0.049 | 0.012 | -0.055 | 0.072 | 0.055 | -0.196 | 0.006 | 0.010 | 0.043 | -0.007 |
|---|
| cdc2 | | 99 | 1 | 1 | 1 | 0.073 | 0.247 | 0.206 | 0.172 | 0.247 | 0.282 | 0.226 | 0.221 | 0.067 | 0.297 |
|---|
| stmn2 | | 19 | 8 | 32 | 18 | 0.057 | 0.106 | 0.005 | 0.052 | 0.110 | 0.006 | 0.034 | 0.103 | 0.075 | 0.113 |
|---|
| psmd10 | | 2 | 53 | 32 | 35 | -0.028 | 0.099 | 0.108 | 0.130 | 0.137 | 0.153 | 0.061 | 0.191 | 0.075 | 0.135 |
|---|
| cdc25a | | 4 | 27 | 32 | 27 | -0.019 | 0.221 | 0.093 | 0.158 | 0.120 | 0.207 | 0.211 | 0.016 | 0.069 | 0.183 |
|---|
| ccnd1 | | 97 | 2 | 8 | 2 | 0.127 | -0.183 | 0.062 | 0.190 | 0.157 | 0.105 | -0.107 | 0.174 | 0.106 | 0.144 |
|---|
GO Enrichment output for subnetwork 5716-7-real in each dataset
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 |  | 2.088E-08 | 4.802E-05 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 2.256E-06 | 2.594E-03 |
|---|
| negative regulation of protein ubiquitination | GO:0031397 | | 3.596E-06 | 2.757E-03 |
|---|
| positive regulation of Rho GTPase activity | GO:0032321 | | 3.596E-06 | 2.068E-03 |
|---|
| anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process | GO:0031145 | | 6.538E-06 | 3.008E-03 |
|---|
| positive regulation of ubiquitin-protein ligase activity during mitotic cell cycle | GO:0051437 | | 6.868E-06 | 2.633E-03 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 7.546E-06 | 2.479E-03 |
|---|
| regulation of focal adhesion formation | GO:0051893 | | 7.546E-06 | 2.169E-03 |
|---|
| positive regulation of ubiquitin-protein ligase activity | GO:0051443 | | 7.924E-06 | 2.025E-03 |
|---|
| regulation of ubiquitin-protein ligase activity during mitotic cell cycle | GO:0051439 | | 7.924E-06 | 1.823E-03 |
|---|
| positive regulation of ligase activity | GO:0051351 | | 9.492E-06 | 1.985E-03 |
|---|
IPC-NIBC-129 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 8.003E-09 | 1.955E-05 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 9.129E-07 | 1.115E-03 |
|---|
| negative regulation of protein ubiquitination | GO:0031397 | | 1.661E-06 | 1.353E-03 |
|---|
| activation of Ras GTPase activity | GO:0032856 | | 2.491E-06 | 1.521E-03 |
|---|
| anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process | GO:0031145 | | 2.997E-06 | 1.464E-03 |
|---|
| positive regulation of ubiquitin-protein ligase activity during mitotic cell cycle | GO:0051437 | | 3.133E-06 | 1.276E-03 |
|---|
| positive regulation of ubiquitin-protein ligase activity | GO:0051443 | | 3.563E-06 | 1.244E-03 |
|---|
| regulation of ubiquitin-protein ligase activity during mitotic cell cycle | GO:0051439 | | 3.563E-06 | 1.088E-03 |
|---|
| positive regulation of ligase activity | GO:0051351 | | 4.365E-06 | 1.185E-03 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 4.648E-06 | 1.135E-03 |
|---|
| regulation of focal adhesion formation | GO:0051893 | | 4.648E-06 | 1.032E-03 |
|---|
Ivshina_GPL96-GPL97 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 5.641E-09 | 1.357E-05 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 7.266E-07 | 8.74E-04 |
|---|
| negative regulation of protein ubiquitination | GO:0031397 | | 1.454E-06 | 1.166E-03 |
|---|
| activation of Ras GTPase activity | GO:0032856 | | 1.454E-06 | 8.748E-04 |
|---|
| anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process | GO:0031145 | | 2.387E-06 | 1.149E-03 |
|---|
| positive regulation of ubiquitin-protein ligase activity during mitotic cell cycle | GO:0051437 | | 2.495E-06 | 1E-03 |
|---|
| positive regulation of ubiquitin-protein ligase activity | GO:0051443 | | 2.838E-06 | 9.754E-04 |
|---|
| regulation of ubiquitin-protein ligase activity during mitotic cell cycle | GO:0051439 | | 2.838E-06 | 8.535E-04 |
|---|
| positive regulation of ligase activity | GO:0051351 | | 3.477E-06 | 9.295E-04 |
|---|
| regulation of ubiquitin-protein ligase activity | GO:0051438 | | 3.757E-06 | 9.039E-04 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 4.07E-06 | 8.901E-04 |
|---|
Loi_GPL570 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 8.003E-09 | 1.955E-05 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 9.129E-07 | 1.115E-03 |
|---|
| negative regulation of protein ubiquitination | GO:0031397 | | 1.661E-06 | 1.353E-03 |
|---|
| activation of Ras GTPase activity | GO:0032856 | | 2.491E-06 | 1.521E-03 |
|---|
| anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process | GO:0031145 | | 2.997E-06 | 1.464E-03 |
|---|
| positive regulation of ubiquitin-protein ligase activity during mitotic cell cycle | GO:0051437 | | 3.133E-06 | 1.276E-03 |
|---|
| positive regulation of ubiquitin-protein ligase activity | GO:0051443 | | 3.563E-06 | 1.244E-03 |
|---|
| regulation of ubiquitin-protein ligase activity during mitotic cell cycle | GO:0051439 | | 3.563E-06 | 1.088E-03 |
|---|
| positive regulation of ligase activity | GO:0051351 | | 4.365E-06 | 1.185E-03 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 4.648E-06 | 1.135E-03 |
|---|
| regulation of focal adhesion formation | GO:0051893 | | 4.648E-06 | 1.032E-03 |
|---|
Loi_GPL96-GPL97 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 5.641E-09 | 1.357E-05 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 7.266E-07 | 8.74E-04 |
|---|
| negative regulation of protein ubiquitination | GO:0031397 | | 1.454E-06 | 1.166E-03 |
|---|
| activation of Ras GTPase activity | GO:0032856 | | 1.454E-06 | 8.748E-04 |
|---|
| anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process | GO:0031145 | | 2.387E-06 | 1.149E-03 |
|---|
| positive regulation of ubiquitin-protein ligase activity during mitotic cell cycle | GO:0051437 | | 2.495E-06 | 1E-03 |
|---|
| positive regulation of ubiquitin-protein ligase activity | GO:0051443 | | 2.838E-06 | 9.754E-04 |
|---|
| regulation of ubiquitin-protein ligase activity during mitotic cell cycle | GO:0051439 | | 2.838E-06 | 8.535E-04 |
|---|
| positive regulation of ligase activity | GO:0051351 | | 3.477E-06 | 9.295E-04 |
|---|
| regulation of ubiquitin-protein ligase activity | GO:0051438 | | 3.757E-06 | 9.039E-04 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 4.07E-06 | 8.901E-04 |
|---|
Pawitan_GPL96-GPL97 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 5.641E-09 | 1.357E-05 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 7.266E-07 | 8.74E-04 |
|---|
| negative regulation of protein ubiquitination | GO:0031397 | | 1.454E-06 | 1.166E-03 |
|---|
| activation of Ras GTPase activity | GO:0032856 | | 1.454E-06 | 8.748E-04 |
|---|
| anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process | GO:0031145 | | 2.387E-06 | 1.149E-03 |
|---|
| positive regulation of ubiquitin-protein ligase activity during mitotic cell cycle | GO:0051437 | | 2.495E-06 | 1E-03 |
|---|
| positive regulation of ubiquitin-protein ligase activity | GO:0051443 | | 2.838E-06 | 9.754E-04 |
|---|
| regulation of ubiquitin-protein ligase activity during mitotic cell cycle | GO:0051439 | | 2.838E-06 | 8.535E-04 |
|---|
| positive regulation of ligase activity | GO:0051351 | | 3.477E-06 | 9.295E-04 |
|---|
| regulation of ubiquitin-protein ligase activity | GO:0051438 | | 3.757E-06 | 9.039E-04 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 4.07E-06 | 8.901E-04 |
|---|
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 2.088E-08 | 4.802E-05 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 2.256E-06 | 2.594E-03 |
|---|
| negative regulation of protein ubiquitination | GO:0031397 | | 3.596E-06 | 2.757E-03 |
|---|
| positive regulation of Rho GTPase activity | GO:0032321 | | 3.596E-06 | 2.068E-03 |
|---|
| anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process | GO:0031145 | | 6.538E-06 | 3.008E-03 |
|---|
| positive regulation of ubiquitin-protein ligase activity during mitotic cell cycle | GO:0051437 | | 6.868E-06 | 2.633E-03 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 7.546E-06 | 2.479E-03 |
|---|
| regulation of focal adhesion formation | GO:0051893 | | 7.546E-06 | 2.169E-03 |
|---|
| positive regulation of ubiquitin-protein ligase activity | GO:0051443 | | 7.924E-06 | 2.025E-03 |
|---|
| regulation of ubiquitin-protein ligase activity during mitotic cell cycle | GO:0051439 | | 7.924E-06 | 1.823E-03 |
|---|
| positive regulation of ligase activity | GO:0051351 | | 9.492E-06 | 1.985E-03 |
|---|
Sotiriou file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 2.088E-08 | 4.802E-05 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 2.256E-06 | 2.594E-03 |
|---|
| negative regulation of protein ubiquitination | GO:0031397 | | 3.596E-06 | 2.757E-03 |
|---|
| positive regulation of Rho GTPase activity | GO:0032321 | | 3.596E-06 | 2.068E-03 |
|---|
| anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process | GO:0031145 | | 6.538E-06 | 3.008E-03 |
|---|
| positive regulation of ubiquitin-protein ligase activity during mitotic cell cycle | GO:0051437 | | 6.868E-06 | 2.633E-03 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 7.546E-06 | 2.479E-03 |
|---|
| regulation of focal adhesion formation | GO:0051893 | | 7.546E-06 | 2.169E-03 |
|---|
| positive regulation of ubiquitin-protein ligase activity | GO:0051443 | | 7.924E-06 | 2.025E-03 |
|---|
| regulation of ubiquitin-protein ligase activity during mitotic cell cycle | GO:0051439 | | 7.924E-06 | 1.823E-03 |
|---|
| positive regulation of ligase activity | GO:0051351 | | 9.492E-06 | 1.985E-03 |
|---|
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 2.088E-08 | 4.802E-05 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 2.256E-06 | 2.594E-03 |
|---|
| negative regulation of protein ubiquitination | GO:0031397 | | 3.596E-06 | 2.757E-03 |
|---|
| positive regulation of Rho GTPase activity | GO:0032321 | | 3.596E-06 | 2.068E-03 |
|---|
| anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process | GO:0031145 | | 6.538E-06 | 3.008E-03 |
|---|
| positive regulation of ubiquitin-protein ligase activity during mitotic cell cycle | GO:0051437 | | 6.868E-06 | 2.633E-03 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 7.546E-06 | 2.479E-03 |
|---|
| regulation of focal adhesion formation | GO:0051893 | | 7.546E-06 | 2.169E-03 |
|---|
| positive regulation of ubiquitin-protein ligase activity | GO:0051443 | | 7.924E-06 | 2.025E-03 |
|---|
| regulation of ubiquitin-protein ligase activity during mitotic cell cycle | GO:0051439 | | 7.924E-06 | 1.823E-03 |
|---|
| positive regulation of ligase activity | GO:0051351 | | 9.492E-06 | 1.985E-03 |
|---|
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 2.088E-08 | 4.802E-05 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 2.256E-06 | 2.594E-03 |
|---|
| negative regulation of protein ubiquitination | GO:0031397 | | 3.596E-06 | 2.757E-03 |
|---|
| positive regulation of Rho GTPase activity | GO:0032321 | | 3.596E-06 | 2.068E-03 |
|---|
| anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process | GO:0031145 | | 6.538E-06 | 3.008E-03 |
|---|
| positive regulation of ubiquitin-protein ligase activity during mitotic cell cycle | GO:0051437 | | 6.868E-06 | 2.633E-03 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 7.546E-06 | 2.479E-03 |
|---|
| regulation of focal adhesion formation | GO:0051893 | | 7.546E-06 | 2.169E-03 |
|---|
| positive regulation of ubiquitin-protein ligase activity | GO:0051443 | | 7.924E-06 | 2.025E-03 |
|---|
| regulation of ubiquitin-protein ligase activity during mitotic cell cycle | GO:0051439 | | 7.924E-06 | 1.823E-03 |
|---|
| positive regulation of ligase activity | GO:0051351 | | 9.492E-06 | 1.985E-03 |
|---|
