Study run-b1

Study informations

127 subnetworks in total page | file

236 genes associated page | file

Enriched GO terms page

General informations

General Index page

Study Index page

Subnetwork 5558-6-real

score

Dataset	Score	P-val 1	P-val 2	P-val 3
Desmedt	0.1768	2.104e-02	8.902e-03	1.044e-01
IPC-NIBC-129	0.1890	1.573e-01	1.463e-01	5.949e-01
Ivshina_GPL96-GPL97	0.2112	3.978e-02	3.067e-02	3.748e-01
Loi_GPL570	0.1811	9.013e-02	1.139e-01	3.521e-01
Loi_GPL96-GPL97	0.1822	7.853e-03	3.551e-03	1.002e-01
Pawitan_GPL96-GPL97	0.3503	1.688e-01	1.065e-01	6.656e-01
Schmidt	0.2184	3.618e-02	3.814e-02	2.195e-01
Sotiriou	0.2468	8.478e-02	3.306e-02	5.154e-01
Wang	0.1839	6.298e-02	4.702e-02	2.146e-01
Zhang	0.2059	4.602e-03	2.140e-03	2.464e-02

Expression data for subnetwork 5558-6-real in each dataset

Desmedt | IPC-NIBC-129 | Ivshina_GPL96-GPL97 | Loi_GPL570 | Loi_GPL96-GPL97 | Pawitan_GPL96-GPL97 | Schmidt | Sotiriou | Wang | Zhang |

Subnetwork structure for each dataset

Desmedt IPC-NIBC-129 Ivshina_GPL96-GPL97 Loi_GPL570 Loi_GPL96-GPL97 Pawitan_GPL96-GPL97 Schmidt Sotiriou Wang Zhang

Desmedt

Score for each gene in subnetwork 5558-6-real in each dataset

Gene Symbol	Links	Frequency	Frequency Rank	Subnetwork score rank	Global rank	Desmedt	IPC-NIBC-129	Ivshina_GPL96-GPL97	Loi_GPL570	Loi_GPL96-GPL97	Pawitan_GPL96-GPL97	Schmidt	Sotiriou	Wang	Zhang
ccnb2		4	27	188	164	0.164	0.176	0.204	0.123	0.172	0.366	0.240	0.169	0.144	0.211
cdc2		99	1	1	1	0.073	0.247	0.206	0.172	0.247	0.282	0.226	0.221	0.067	0.297
rpa3		2	53	194	180	0.011	0.107	0.109	0.001	0.162	0.191	0.126	0.132	0.149	0.043
mcm2		4	27	188	164	0.151	0.254	0.188	0.128	0.154	0.267	0.224	0.200	0.101	0.012
prim2		1	90	217	222	0.026	0.190	0.010	0.114	0.084	0.185	0.247	0.072	0.083	0.015
pole2		1	90	217	222	0.074	0.157	0.080	0.094	0.074	0.195	0.126	0.036	0.095	0.104
ccnd1		97	2	8	2	0.127	-0.183	0.062	0.190	0.157	0.105	-0.107	0.174	0.106	0.144

GO Enrichment output for subnetwork 5558-6-real in each dataset

Desmedt file

Name	Accession Number	Link	P-val	Corrected P-val
DNA-dependent DNA replication	GO:0006261		6.59E-09	1.516E-05
nucleotide-excision repair. DNA gap filling	GO:0006297		7.518E-08	8.646E-05
nucleotide-excision repair	GO:0006289		2.935E-06	2.25E-03
positive regulation of cyclin-dependent protein kinase activity	GO:0045737		6.175E-06	3.551E-03
thymus development	GO:0048538		1.058E-05	4.867E-03
T cell homeostasis	GO:0043029		1.615E-05	6.192E-03
lymphocyte homeostasis	GO:0002260		2.289E-05	7.522E-03
DNA unwinding during replication	GO:0006268		2.67E-05	7.677E-03
cellular response to unfolded protein	GO:0034620		3.519E-05	8.993E-03
DNA replication initiation	GO:0006270		3.519E-05	8.094E-03
DNA duplex unwinding	GO:0032508		3.987E-05	8.336E-03

IPC-NIBC-129 file

Name	Accession Number	Link	P-val	Corrected P-val
DNA-dependent DNA replication	GO:0006261		1.09E-11	2.663E-08
DNA replication. synthesis of RNA primer	GO:0006269		4.862E-10	5.939E-07
nucleotide-excision repair. DNA gap filling	GO:0006297		2.716E-08	2.211E-05
nucleotide-excision repair	GO:0006289		1.405E-06	8.584E-04
positive regulation of cyclin-dependent protein kinase activity	GO:0045737		4.028E-06	1.968E-03
thymus development	GO:0048538		7.907E-06	3.22E-03
T cell homeostasis	GO:0043029		9.487E-06	3.311E-03
lymphocyte homeostasis	GO:0002260		1.508E-05	4.606E-03
DNA replication initiation	GO:0006270		1.723E-05	4.678E-03
DNA unwinding during replication	GO:0006268		1.953E-05	4.77E-03
DNA duplex unwinding	GO:0032508		2.726E-05	6.054E-03

Ivshina_GPL96-GPL97 file

Name	Accession Number	Link	P-val	Corrected P-val
DNA-dependent DNA replication	GO:0006261		2.023E-09	4.867E-06
nucleotide-excision repair. DNA gap filling	GO:0006297		2.024E-08	2.435E-05
nucleotide-excision repair	GO:0006289		9.941E-07	7.973E-04
positive regulation of cyclin-dependent protein kinase activity	GO:0045737		3.392E-06	2.04E-03
thymus development	GO:0048538		6.658E-06	3.204E-03
T cell homeostasis	GO:0043029		7.988E-06	3.203E-03
lymphocyte homeostasis	GO:0002260		1.27E-05	4.366E-03
DNA replication initiation	GO:0006270		1.451E-05	4.365E-03
DNA unwinding during replication	GO:0006268		1.644E-05	4.396E-03
cellular response to unfolded protein	GO:0034620		2.067E-05	4.973E-03
DNA duplex unwinding	GO:0032508		2.296E-05	5.022E-03

Loi_GPL570 file

Name	Accession Number	Link	P-val	Corrected P-val
DNA-dependent DNA replication	GO:0006261		1.09E-11	2.663E-08
DNA replication. synthesis of RNA primer	GO:0006269		4.862E-10	5.939E-07
nucleotide-excision repair. DNA gap filling	GO:0006297		2.716E-08	2.211E-05
nucleotide-excision repair	GO:0006289		1.405E-06	8.584E-04
positive regulation of cyclin-dependent protein kinase activity	GO:0045737		4.028E-06	1.968E-03
thymus development	GO:0048538		7.907E-06	3.22E-03
T cell homeostasis	GO:0043029		9.487E-06	3.311E-03
lymphocyte homeostasis	GO:0002260		1.508E-05	4.606E-03
DNA replication initiation	GO:0006270		1.723E-05	4.678E-03
DNA unwinding during replication	GO:0006268		1.953E-05	4.77E-03
DNA duplex unwinding	GO:0032508		2.726E-05	6.054E-03

Loi_GPL96-GPL97 file

Name	Accession Number	Link	P-val	Corrected P-val
DNA-dependent DNA replication	GO:0006261		2.023E-09	4.867E-06
nucleotide-excision repair. DNA gap filling	GO:0006297		2.024E-08	2.435E-05
nucleotide-excision repair	GO:0006289		9.941E-07	7.973E-04
positive regulation of cyclin-dependent protein kinase activity	GO:0045737		3.392E-06	2.04E-03
thymus development	GO:0048538		6.658E-06	3.204E-03
T cell homeostasis	GO:0043029		7.988E-06	3.203E-03
lymphocyte homeostasis	GO:0002260		1.27E-05	4.366E-03
DNA replication initiation	GO:0006270		1.451E-05	4.365E-03
DNA unwinding during replication	GO:0006268		1.644E-05	4.396E-03
cellular response to unfolded protein	GO:0034620		2.067E-05	4.973E-03
DNA duplex unwinding	GO:0032508		2.296E-05	5.022E-03

Pawitan_GPL96-GPL97 file

Name	Accession Number	Link	P-val	Corrected P-val
DNA-dependent DNA replication	GO:0006261		2.023E-09	4.867E-06
nucleotide-excision repair. DNA gap filling	GO:0006297		2.024E-08	2.435E-05
nucleotide-excision repair	GO:0006289		9.941E-07	7.973E-04
positive regulation of cyclin-dependent protein kinase activity	GO:0045737		3.392E-06	2.04E-03
thymus development	GO:0048538		6.658E-06	3.204E-03
T cell homeostasis	GO:0043029		7.988E-06	3.203E-03
lymphocyte homeostasis	GO:0002260		1.27E-05	4.366E-03
DNA replication initiation	GO:0006270		1.451E-05	4.365E-03
DNA unwinding during replication	GO:0006268		1.644E-05	4.396E-03
cellular response to unfolded protein	GO:0034620		2.067E-05	4.973E-03
DNA duplex unwinding	GO:0032508		2.296E-05	5.022E-03

Schmidt file

Name	Accession Number	Link	P-val	Corrected P-val
DNA-dependent DNA replication	GO:0006261		6.59E-09	1.516E-05
nucleotide-excision repair. DNA gap filling	GO:0006297		7.518E-08	8.646E-05
nucleotide-excision repair	GO:0006289		2.935E-06	2.25E-03
positive regulation of cyclin-dependent protein kinase activity	GO:0045737		6.175E-06	3.551E-03
thymus development	GO:0048538		1.058E-05	4.867E-03
T cell homeostasis	GO:0043029		1.615E-05	6.192E-03
lymphocyte homeostasis	GO:0002260		2.289E-05	7.522E-03
DNA unwinding during replication	GO:0006268		2.67E-05	7.677E-03
cellular response to unfolded protein	GO:0034620		3.519E-05	8.993E-03
DNA replication initiation	GO:0006270		3.519E-05	8.094E-03
DNA duplex unwinding	GO:0032508		3.987E-05	8.336E-03

Sotiriou file

Name	Accession Number	Link	P-val	Corrected P-val
DNA-dependent DNA replication	GO:0006261		6.59E-09	1.516E-05
nucleotide-excision repair. DNA gap filling	GO:0006297		7.518E-08	8.646E-05
nucleotide-excision repair	GO:0006289		2.935E-06	2.25E-03
positive regulation of cyclin-dependent protein kinase activity	GO:0045737		6.175E-06	3.551E-03
thymus development	GO:0048538		1.058E-05	4.867E-03
T cell homeostasis	GO:0043029		1.615E-05	6.192E-03
lymphocyte homeostasis	GO:0002260		2.289E-05	7.522E-03
DNA unwinding during replication	GO:0006268		2.67E-05	7.677E-03
cellular response to unfolded protein	GO:0034620		3.519E-05	8.993E-03
DNA replication initiation	GO:0006270		3.519E-05	8.094E-03
DNA duplex unwinding	GO:0032508		3.987E-05	8.336E-03

Wang file

Name	Accession Number	Link	P-val	Corrected P-val
DNA-dependent DNA replication	GO:0006261		6.59E-09	1.516E-05
nucleotide-excision repair. DNA gap filling	GO:0006297		7.518E-08	8.646E-05
nucleotide-excision repair	GO:0006289		2.935E-06	2.25E-03
positive regulation of cyclin-dependent protein kinase activity	GO:0045737		6.175E-06	3.551E-03
thymus development	GO:0048538		1.058E-05	4.867E-03
T cell homeostasis	GO:0043029		1.615E-05	6.192E-03
lymphocyte homeostasis	GO:0002260		2.289E-05	7.522E-03
DNA unwinding during replication	GO:0006268		2.67E-05	7.677E-03
cellular response to unfolded protein	GO:0034620		3.519E-05	8.993E-03
DNA replication initiation	GO:0006270		3.519E-05	8.094E-03
DNA duplex unwinding	GO:0032508		3.987E-05	8.336E-03

Zhang file

Name	Accession Number	Link	P-val	Corrected P-val
DNA-dependent DNA replication	GO:0006261		6.59E-09	1.516E-05
nucleotide-excision repair. DNA gap filling	GO:0006297		7.518E-08	8.646E-05
nucleotide-excision repair	GO:0006289		2.935E-06	2.25E-03
positive regulation of cyclin-dependent protein kinase activity	GO:0045737		6.175E-06	3.551E-03
thymus development	GO:0048538		1.058E-05	4.867E-03
T cell homeostasis	GO:0043029		1.615E-05	6.192E-03
lymphocyte homeostasis	GO:0002260		2.289E-05	7.522E-03
DNA unwinding during replication	GO:0006268		2.67E-05	7.677E-03
cellular response to unfolded protein	GO:0034620		3.519E-05	8.993E-03
DNA replication initiation	GO:0006270		3.519E-05	8.094E-03
DNA duplex unwinding	GO:0032508		3.987E-05	8.336E-03