Study run-b1
Study informations
127 subnetworks in total page | file
236 genes associated page | file
Enriched GO terms page
General informations
General Index page
Study Index page
Subnetwork 55165-6-real
score
| Dataset | Score | P-val 1 | P-val 2 | P-val 3 |
|---|
| Desmedt | 0.1543 | 1.462e-02 | 5.428e-03 | 7.866e-02 |
|---|
| IPC-NIBC-129 | 0.2479 | 8.457e-02 | 7.274e-02 | 3.785e-01 |
|---|
| Ivshina_GPL96-GPL97 | 0.2286 | 1.239e-02 | 7.828e-03 | 1.502e-01 |
|---|
| Loi_GPL570 | 0.2313 | 1.360e-01 | 1.661e-01 | 4.680e-01 |
|---|
| Loi_GPL96-GPL97 | 0.2031 | 1.889e-02 | 1.147e-02 | 2.607e-01 |
|---|
| Pawitan_GPL96-GPL97 | 0.3375 | 6.871e-02 | 3.364e-02 | 3.877e-01 |
|---|
| Schmidt | 0.1870 | 1.756e-02 | 1.882e-02 | 1.200e-01 |
|---|
| Sotiriou | 0.2925 | 6.051e-02 | 2.042e-02 | 4.147e-01 |
|---|
| Wang | 0.1614 | 9.245e-02 | 7.630e-02 | 2.849e-01 |
|---|
| Zhang | 0.2893 | 5.713e-03 | 2.724e-03 | 2.949e-02 |
|---|
Expression data for subnetwork 55165-6-real in each dataset
Desmedt |
IPC-NIBC-129 |
Ivshina_GPL96-GPL97 |
Loi_GPL570 |
Loi_GPL96-GPL97 |
Pawitan_GPL96-GPL97 |
Schmidt |
Sotiriou |
Wang |
Zhang |
Subnetwork structure for each dataset
- Desmedt
Score for each gene in subnetwork 55165-6-real in each dataset
| Gene Symbol | Links | Frequency | Frequency Rank | Subnetwork score rank | Global rank |
Desmedt | IPC-NIBC-129 | Ivshina_GPL96-GPL97 | Loi_GPL570 | Loi_GPL96-GPL97 | Pawitan_GPL96-GPL97 | Schmidt | Sotiriou | Wang | Zhang |
|---|
| cdkn3 |   | 18 | 9 | 26 | 16 | 0.114 | 0.269 | 0.199 | 0.136 | 0.193 | 0.323 | 0.186 | 0.198 | 0.134 | 0.271 |
|---|
| tsc1 | | 31 | 5 | 26 | 15 | 0.049 | 0.012 | -0.055 | 0.072 | 0.055 | -0.196 | 0.006 | 0.010 | 0.043 | -0.007 |
|---|
| cdc2 | | 99 | 1 | 1 | 1 | 0.073 | 0.247 | 0.206 | 0.172 | 0.247 | 0.282 | 0.226 | 0.221 | 0.067 | 0.297 |
|---|
| stmn2 | | 19 | 8 | 32 | 18 | 0.057 | 0.106 | 0.005 | 0.052 | 0.110 | 0.006 | 0.034 | 0.103 | 0.075 | 0.113 |
|---|
| cep55 | | 1 | 90 | 96 | 107 | 0.054 | 0.210 | 0.148 | 0.129 | 0.135 | 0.209 | 0.202 | 0.138 | 0.144 | 0.115 |
|---|
| ccnb1 | | 33 | 4 | 68 | 40 | 0.082 | 0.246 | 0.212 | 0.224 | 0.256 | 0.351 | 0.129 | 0.249 | 0.152 | 0.167 |
|---|
| ccnd1 | | 97 | 2 | 8 | 2 | 0.127 | -0.183 | 0.062 | 0.190 | 0.157 | 0.105 | -0.107 | 0.174 | 0.106 | 0.144 |
|---|
GO Enrichment output for subnetwork 55165-6-real in each dataset
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| interphase of mitotic cell cycle | GO:0051329 |  | 1.121E-07 | 2.578E-04 |
|---|
| interphase | GO:0051325 | | 1.23E-07 | 1.414E-04 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 1.643E-06 | 1.26E-03 |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 2.767E-06 | 1.591E-03 |
|---|
| negative regulation of protein ubiquitination | GO:0031397 | | 2.942E-06 | 1.353E-03 |
|---|
| positive regulation of Rho GTPase activity | GO:0032321 | | 2.942E-06 | 1.128E-03 |
|---|
| anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process | GO:0031145 | | 4.767E-06 | 1.566E-03 |
|---|
| positive regulation of ubiquitin-protein ligase activity during mitotic cell cycle | GO:0051437 | | 5.008E-06 | 1.44E-03 |
|---|
| positive regulation of ubiquitin-protein ligase activity | GO:0051443 | | 5.779E-06 | 1.477E-03 |
|---|
| regulation of ubiquitin-protein ligase activity during mitotic cell cycle | GO:0051439 | | 5.779E-06 | 1.329E-03 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 6.175E-06 | 1.291E-03 |
|---|
IPC-NIBC-129 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| interphase of mitotic cell cycle | GO:0051329 | | 3.811E-08 | 9.31E-05 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 5.749E-07 | 7.022E-04 |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 1.106E-06 | 9.003E-04 |
|---|
| negative regulation of protein ubiquitination | GO:0031397 | | 1.234E-06 | 7.537E-04 |
|---|
| activation of Ras GTPase activity | GO:0032856 | | 1.851E-06 | 9.043E-04 |
|---|
| anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process | GO:0031145 | | 1.889E-06 | 7.692E-04 |
|---|
| positive regulation of ubiquitin-protein ligase activity during mitotic cell cycle | GO:0051437 | | 1.975E-06 | 6.891E-04 |
|---|
| positive regulation of ubiquitin-protein ligase activity | GO:0051443 | | 2.246E-06 | 6.86E-04 |
|---|
| regulation of ubiquitin-protein ligase activity during mitotic cell cycle | GO:0051439 | | 2.246E-06 | 6.097E-04 |
|---|
| positive regulation of ligase activity | GO:0051351 | | 2.752E-06 | 6.724E-04 |
|---|
| regulation of ubiquitin-protein ligase activity | GO:0051438 | | 2.974E-06 | 6.605E-04 |
|---|
Ivshina_GPL96-GPL97 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| interphase of mitotic cell cycle | GO:0051329 | | 4.51E-08 | 1.085E-04 |
|---|
| interphase | GO:0051325 | | 5.114E-08 | 6.152E-05 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 7.266E-07 | 5.827E-04 |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 1.397E-06 | 8.403E-04 |
|---|
| negative regulation of protein ubiquitination | GO:0031397 | | 1.454E-06 | 6.998E-04 |
|---|
| activation of Ras GTPase activity | GO:0032856 | | 1.454E-06 | 5.832E-04 |
|---|
| anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process | GO:0031145 | | 2.387E-06 | 8.204E-04 |
|---|
| positive regulation of ubiquitin-protein ligase activity during mitotic cell cycle | GO:0051437 | | 2.495E-06 | 7.503E-04 |
|---|
| positive regulation of ubiquitin-protein ligase activity | GO:0051443 | | 2.838E-06 | 7.587E-04 |
|---|
| regulation of ubiquitin-protein ligase activity during mitotic cell cycle | GO:0051439 | | 2.838E-06 | 6.828E-04 |
|---|
| positive regulation of ligase activity | GO:0051351 | | 3.477E-06 | 7.605E-04 |
|---|
Loi_GPL570 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| interphase of mitotic cell cycle | GO:0051329 | | 3.811E-08 | 9.31E-05 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 5.749E-07 | 7.022E-04 |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 1.106E-06 | 9.003E-04 |
|---|
| negative regulation of protein ubiquitination | GO:0031397 | | 1.234E-06 | 7.537E-04 |
|---|
| activation of Ras GTPase activity | GO:0032856 | | 1.851E-06 | 9.043E-04 |
|---|
| anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process | GO:0031145 | | 1.889E-06 | 7.692E-04 |
|---|
| positive regulation of ubiquitin-protein ligase activity during mitotic cell cycle | GO:0051437 | | 1.975E-06 | 6.891E-04 |
|---|
| positive regulation of ubiquitin-protein ligase activity | GO:0051443 | | 2.246E-06 | 6.86E-04 |
|---|
| regulation of ubiquitin-protein ligase activity during mitotic cell cycle | GO:0051439 | | 2.246E-06 | 6.097E-04 |
|---|
| positive regulation of ligase activity | GO:0051351 | | 2.752E-06 | 6.724E-04 |
|---|
| regulation of ubiquitin-protein ligase activity | GO:0051438 | | 2.974E-06 | 6.605E-04 |
|---|
Loi_GPL96-GPL97 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| interphase of mitotic cell cycle | GO:0051329 | | 4.51E-08 | 1.085E-04 |
|---|
| interphase | GO:0051325 | | 5.114E-08 | 6.152E-05 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 7.266E-07 | 5.827E-04 |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 1.397E-06 | 8.403E-04 |
|---|
| negative regulation of protein ubiquitination | GO:0031397 | | 1.454E-06 | 6.998E-04 |
|---|
| activation of Ras GTPase activity | GO:0032856 | | 1.454E-06 | 5.832E-04 |
|---|
| anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process | GO:0031145 | | 2.387E-06 | 8.204E-04 |
|---|
| positive regulation of ubiquitin-protein ligase activity during mitotic cell cycle | GO:0051437 | | 2.495E-06 | 7.503E-04 |
|---|
| positive regulation of ubiquitin-protein ligase activity | GO:0051443 | | 2.838E-06 | 7.587E-04 |
|---|
| regulation of ubiquitin-protein ligase activity during mitotic cell cycle | GO:0051439 | | 2.838E-06 | 6.828E-04 |
|---|
| positive regulation of ligase activity | GO:0051351 | | 3.477E-06 | 7.605E-04 |
|---|
Pawitan_GPL96-GPL97 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| interphase of mitotic cell cycle | GO:0051329 | | 4.51E-08 | 1.085E-04 |
|---|
| interphase | GO:0051325 | | 5.114E-08 | 6.152E-05 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 7.266E-07 | 5.827E-04 |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 1.397E-06 | 8.403E-04 |
|---|
| negative regulation of protein ubiquitination | GO:0031397 | | 1.454E-06 | 6.998E-04 |
|---|
| activation of Ras GTPase activity | GO:0032856 | | 1.454E-06 | 5.832E-04 |
|---|
| anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process | GO:0031145 | | 2.387E-06 | 8.204E-04 |
|---|
| positive regulation of ubiquitin-protein ligase activity during mitotic cell cycle | GO:0051437 | | 2.495E-06 | 7.503E-04 |
|---|
| positive regulation of ubiquitin-protein ligase activity | GO:0051443 | | 2.838E-06 | 7.587E-04 |
|---|
| regulation of ubiquitin-protein ligase activity during mitotic cell cycle | GO:0051439 | | 2.838E-06 | 6.828E-04 |
|---|
| positive regulation of ligase activity | GO:0051351 | | 3.477E-06 | 7.605E-04 |
|---|
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| interphase of mitotic cell cycle | GO:0051329 | | 1.121E-07 | 2.578E-04 |
|---|
| interphase | GO:0051325 | | 1.23E-07 | 1.414E-04 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 1.643E-06 | 1.26E-03 |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 2.767E-06 | 1.591E-03 |
|---|
| negative regulation of protein ubiquitination | GO:0031397 | | 2.942E-06 | 1.353E-03 |
|---|
| positive regulation of Rho GTPase activity | GO:0032321 | | 2.942E-06 | 1.128E-03 |
|---|
| anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process | GO:0031145 | | 4.767E-06 | 1.566E-03 |
|---|
| positive regulation of ubiquitin-protein ligase activity during mitotic cell cycle | GO:0051437 | | 5.008E-06 | 1.44E-03 |
|---|
| positive regulation of ubiquitin-protein ligase activity | GO:0051443 | | 5.779E-06 | 1.477E-03 |
|---|
| regulation of ubiquitin-protein ligase activity during mitotic cell cycle | GO:0051439 | | 5.779E-06 | 1.329E-03 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 6.175E-06 | 1.291E-03 |
|---|
Sotiriou file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| interphase of mitotic cell cycle | GO:0051329 | | 1.121E-07 | 2.578E-04 |
|---|
| interphase | GO:0051325 | | 1.23E-07 | 1.414E-04 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 1.643E-06 | 1.26E-03 |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 2.767E-06 | 1.591E-03 |
|---|
| negative regulation of protein ubiquitination | GO:0031397 | | 2.942E-06 | 1.353E-03 |
|---|
| positive regulation of Rho GTPase activity | GO:0032321 | | 2.942E-06 | 1.128E-03 |
|---|
| anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process | GO:0031145 | | 4.767E-06 | 1.566E-03 |
|---|
| positive regulation of ubiquitin-protein ligase activity during mitotic cell cycle | GO:0051437 | | 5.008E-06 | 1.44E-03 |
|---|
| positive regulation of ubiquitin-protein ligase activity | GO:0051443 | | 5.779E-06 | 1.477E-03 |
|---|
| regulation of ubiquitin-protein ligase activity during mitotic cell cycle | GO:0051439 | | 5.779E-06 | 1.329E-03 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 6.175E-06 | 1.291E-03 |
|---|
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| interphase of mitotic cell cycle | GO:0051329 | | 1.121E-07 | 2.578E-04 |
|---|
| interphase | GO:0051325 | | 1.23E-07 | 1.414E-04 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 1.643E-06 | 1.26E-03 |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 2.767E-06 | 1.591E-03 |
|---|
| negative regulation of protein ubiquitination | GO:0031397 | | 2.942E-06 | 1.353E-03 |
|---|
| positive regulation of Rho GTPase activity | GO:0032321 | | 2.942E-06 | 1.128E-03 |
|---|
| anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process | GO:0031145 | | 4.767E-06 | 1.566E-03 |
|---|
| positive regulation of ubiquitin-protein ligase activity during mitotic cell cycle | GO:0051437 | | 5.008E-06 | 1.44E-03 |
|---|
| positive regulation of ubiquitin-protein ligase activity | GO:0051443 | | 5.779E-06 | 1.477E-03 |
|---|
| regulation of ubiquitin-protein ligase activity during mitotic cell cycle | GO:0051439 | | 5.779E-06 | 1.329E-03 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 6.175E-06 | 1.291E-03 |
|---|
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| interphase of mitotic cell cycle | GO:0051329 | | 1.121E-07 | 2.578E-04 |
|---|
| interphase | GO:0051325 | | 1.23E-07 | 1.414E-04 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 1.643E-06 | 1.26E-03 |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 2.767E-06 | 1.591E-03 |
|---|
| negative regulation of protein ubiquitination | GO:0031397 | | 2.942E-06 | 1.353E-03 |
|---|
| positive regulation of Rho GTPase activity | GO:0032321 | | 2.942E-06 | 1.128E-03 |
|---|
| anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process | GO:0031145 | | 4.767E-06 | 1.566E-03 |
|---|
| positive regulation of ubiquitin-protein ligase activity during mitotic cell cycle | GO:0051437 | | 5.008E-06 | 1.44E-03 |
|---|
| positive regulation of ubiquitin-protein ligase activity | GO:0051443 | | 5.779E-06 | 1.477E-03 |
|---|
| regulation of ubiquitin-protein ligase activity during mitotic cell cycle | GO:0051439 | | 5.779E-06 | 1.329E-03 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 6.175E-06 | 1.291E-03 |
|---|
