Study run-b1

Study informations

127 subnetworks in total page | file

236 genes associated page | file

Enriched GO terms page

General informations

General Index page

Study Index page

Subnetwork 5460-6-real

score

Dataset	Score	P-val 1	P-val 2	P-val 3
Desmedt	0.1094	1.564e-02	5.950e-03	8.293e-02
IPC-NIBC-129	0.2006	3.409e-02	2.584e-02	1.659e-01
Ivshina_GPL96-GPL97	0.2254	3.167e-02	2.352e-02	3.188e-01
Loi_GPL570	0.3029	1.361e-01	1.662e-01	4.683e-01
Loi_GPL96-GPL97	0.1878	9.706e-02	9.476e-02	8.009e-01
Pawitan_GPL96-GPL97	0.3283	1.166e-01	6.625e-02	5.439e-01
Schmidt	0.1869	3.036e-02	3.213e-02	1.905e-01
Sotiriou	0.2580	7.747e-02	2.907e-02	4.874e-01
Wang	0.2053	4.362e-02	2.944e-02	1.622e-01
Zhang	0.2406	6.677e-03	3.242e-03	3.355e-02

Expression data for subnetwork 5460-6-real in each dataset

Desmedt | IPC-NIBC-129 | Ivshina_GPL96-GPL97 | Loi_GPL570 | Loi_GPL96-GPL97 | Pawitan_GPL96-GPL97 | Schmidt | Sotiriou | Wang | Zhang |

Subnetwork structure for each dataset

Desmedt IPC-NIBC-129 Ivshina_GPL96-GPL97 Loi_GPL570 Loi_GPL96-GPL97 Pawitan_GPL96-GPL97 Schmidt Sotiriou Wang Zhang

Desmedt

Score for each gene in subnetwork 5460-6-real in each dataset

Gene Symbol	Links	Frequency	Frequency Rank	Subnetwork score rank	Global rank	Desmedt	IPC-NIBC-129	Ivshina_GPL96-GPL97	Loi_GPL570	Loi_GPL96-GPL97	Pawitan_GPL96-GPL97	Schmidt	Sotiriou	Wang	Zhang
pcna		39	3	8	3	0.096	0.202	0.109	0.180	0.118	0.256	0.151	0.059	0.162	0.123
psmd2		3	39	20	22	0.147	0.322	0.122	0.146	0.143	0.194	0.318	0.151	0.154	0.042
cdc2		99	1	1	1	0.073	0.247	0.206	0.172	0.247	0.282	0.226	0.221	0.067	0.297
pou5f1		1	90	153	160	-0.005	0.152	0.070	0.087	0.074	0.082	0.018	0.016	0.066	0.058
mnat1		1	90	153	160	-0.011	0.083	0.075	0.305	0.105	0.107	0.118	-0.002	0.144	0.307
hmgb2		1	90	153	160	-0.035	0.199	0.149	0.166	0.180	0.172	0.210	0.177	0.096	0.138
psmd8		1	90	153	160	-0.031	0.158	0.163	0.198	0.168	0.274	-0.009	0.177	0.086	-0.069
ccnd1		97	2	8	2	0.127	-0.183	0.062	0.190	0.157	0.105	-0.107	0.174	0.106	0.144

GO Enrichment output for subnetwork 5460-6-real in each dataset

Desmedt file

Name	Accession Number	Link	P-val	Corrected P-val
anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process	GO:0031145		4.346E-08	9.996E-05
positive regulation of ubiquitin-protein ligase activity during mitotic cell cycle	GO:0051437		4.645E-08	5.341E-05
positive regulation of ubiquitin-protein ligase activity	GO:0051443		5.632E-08	4.318E-05
regulation of ubiquitin-protein ligase activity during mitotic cell cycle	GO:0051439		5.632E-08	3.238E-05
positive regulation of ligase activity	GO:0051351		7.182E-08	3.304E-05
regulation of ubiquitin-protein ligase activity	GO:0051438		8.066E-08	3.092E-05
regulation of ligase activity	GO:0051340		1.008E-07	3.311E-05
proteasomal ubiquitin-dependent protein catabolic process	GO:0043161		1.309E-07	3.764E-05
base-excision repair	GO:0006284		3.724E-07	9.517E-05
response to calcium ion	GO:0051592		1.808E-06	4.158E-04
regulation of cyclin-dependent protein kinase activity	GO:0000079		3.796E-06	7.938E-04

IPC-NIBC-129 file

Name	Accession Number	Link	P-val	Corrected P-val
anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process	GO:0031145		1.208E-08	2.952E-05
positive regulation of ubiquitin-protein ligase activity during mitotic cell cycle	GO:0051437		1.283E-08	1.567E-05
positive regulation of ubiquitin-protein ligase activity	GO:0051443		1.525E-08	1.242E-05
regulation of ubiquitin-protein ligase activity during mitotic cell cycle	GO:0051439		1.525E-08	9.315E-06
positive regulation of ligase activity	GO:0051351		2.004E-08	9.792E-06
regulation of ubiquitin-protein ligase activity	GO:0051438		2.224E-08	9.055E-06
regulation of ligase activity	GO:0051340		2.853E-08	9.956E-06
proteasomal ubiquitin-dependent protein catabolic process	GO:0043161		4.308E-08	1.316E-05
base-excision repair	GO:0006284		1.584E-07	4.3E-05
response to calcium ion	GO:0051592		8.866E-07	2.166E-04
regulation of cyclin-dependent protein kinase activity	GO:0000079		1.405E-06	3.121E-04

Ivshina_GPL96-GPL97 file

Name	Accession Number	Link	P-val	Corrected P-val
anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process	GO:0031145		1.673E-08	4.026E-05
positive regulation of ubiquitin-protein ligase activity during mitotic cell cycle	GO:0051437		1.776E-08	2.136E-05
positive regulation of ubiquitin-protein ligase activity	GO:0051443		2.112E-08	1.694E-05
regulation of ubiquitin-protein ligase activity during mitotic cell cycle	GO:0051439		2.112E-08	1.27E-05
positive regulation of ligase activity	GO:0051351		2.774E-08	1.335E-05
regulation of ubiquitin-protein ligase activity	GO:0051438		3.079E-08	1.235E-05
regulation of ligase activity	GO:0051340		3.949E-08	1.357E-05
proteasomal ubiquitin-dependent protein catabolic process	GO:0043161		5.963E-08	1.793E-05
base-excision repair	GO:0006284		1.827E-07	4.883E-05
response to calcium ion	GO:0051592		1.008E-06	2.424E-04
nucleotide-excision repair	GO:0006289		1.719E-06	3.759E-04

Loi_GPL570 file

Name	Accession Number	Link	P-val	Corrected P-val
anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process	GO:0031145		1.208E-08	2.952E-05
positive regulation of ubiquitin-protein ligase activity during mitotic cell cycle	GO:0051437		1.283E-08	1.567E-05
positive regulation of ubiquitin-protein ligase activity	GO:0051443		1.525E-08	1.242E-05
regulation of ubiquitin-protein ligase activity during mitotic cell cycle	GO:0051439		1.525E-08	9.315E-06
positive regulation of ligase activity	GO:0051351		2.004E-08	9.792E-06
regulation of ubiquitin-protein ligase activity	GO:0051438		2.224E-08	9.055E-06
regulation of ligase activity	GO:0051340		2.853E-08	9.956E-06
proteasomal ubiquitin-dependent protein catabolic process	GO:0043161		4.308E-08	1.316E-05
base-excision repair	GO:0006284		1.584E-07	4.3E-05
response to calcium ion	GO:0051592		8.866E-07	2.166E-04
regulation of cyclin-dependent protein kinase activity	GO:0000079		1.405E-06	3.121E-04

Loi_GPL96-GPL97 file

Name	Accession Number	Link	P-val	Corrected P-val
anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process	GO:0031145		1.673E-08	4.026E-05
positive regulation of ubiquitin-protein ligase activity during mitotic cell cycle	GO:0051437		1.776E-08	2.136E-05
positive regulation of ubiquitin-protein ligase activity	GO:0051443		2.112E-08	1.694E-05
regulation of ubiquitin-protein ligase activity during mitotic cell cycle	GO:0051439		2.112E-08	1.27E-05
positive regulation of ligase activity	GO:0051351		2.774E-08	1.335E-05
regulation of ubiquitin-protein ligase activity	GO:0051438		3.079E-08	1.235E-05
regulation of ligase activity	GO:0051340		3.949E-08	1.357E-05
proteasomal ubiquitin-dependent protein catabolic process	GO:0043161		5.963E-08	1.793E-05
base-excision repair	GO:0006284		1.827E-07	4.883E-05
response to calcium ion	GO:0051592		1.008E-06	2.424E-04
nucleotide-excision repair	GO:0006289		1.719E-06	3.759E-04

Pawitan_GPL96-GPL97 file

Name	Accession Number	Link	P-val	Corrected P-val
anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process	GO:0031145		1.673E-08	4.026E-05
positive regulation of ubiquitin-protein ligase activity during mitotic cell cycle	GO:0051437		1.776E-08	2.136E-05
positive regulation of ubiquitin-protein ligase activity	GO:0051443		2.112E-08	1.694E-05
regulation of ubiquitin-protein ligase activity during mitotic cell cycle	GO:0051439		2.112E-08	1.27E-05
positive regulation of ligase activity	GO:0051351		2.774E-08	1.335E-05
regulation of ubiquitin-protein ligase activity	GO:0051438		3.079E-08	1.235E-05
regulation of ligase activity	GO:0051340		3.949E-08	1.357E-05
proteasomal ubiquitin-dependent protein catabolic process	GO:0043161		5.963E-08	1.793E-05
base-excision repair	GO:0006284		1.827E-07	4.883E-05
response to calcium ion	GO:0051592		1.008E-06	2.424E-04
nucleotide-excision repair	GO:0006289		1.719E-06	3.759E-04

Schmidt file

Name	Accession Number	Link	P-val	Corrected P-val
anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process	GO:0031145		4.346E-08	9.996E-05
positive regulation of ubiquitin-protein ligase activity during mitotic cell cycle	GO:0051437		4.645E-08	5.341E-05
positive regulation of ubiquitin-protein ligase activity	GO:0051443		5.632E-08	4.318E-05
regulation of ubiquitin-protein ligase activity during mitotic cell cycle	GO:0051439		5.632E-08	3.238E-05
positive regulation of ligase activity	GO:0051351		7.182E-08	3.304E-05
regulation of ubiquitin-protein ligase activity	GO:0051438		8.066E-08	3.092E-05
regulation of ligase activity	GO:0051340		1.008E-07	3.311E-05
proteasomal ubiquitin-dependent protein catabolic process	GO:0043161		1.309E-07	3.764E-05
base-excision repair	GO:0006284		3.724E-07	9.517E-05
response to calcium ion	GO:0051592		1.808E-06	4.158E-04
regulation of cyclin-dependent protein kinase activity	GO:0000079		3.796E-06	7.938E-04

Sotiriou file

Name	Accession Number	Link	P-val	Corrected P-val
anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process	GO:0031145		4.346E-08	9.996E-05
positive regulation of ubiquitin-protein ligase activity during mitotic cell cycle	GO:0051437		4.645E-08	5.341E-05
positive regulation of ubiquitin-protein ligase activity	GO:0051443		5.632E-08	4.318E-05
regulation of ubiquitin-protein ligase activity during mitotic cell cycle	GO:0051439		5.632E-08	3.238E-05
positive regulation of ligase activity	GO:0051351		7.182E-08	3.304E-05
regulation of ubiquitin-protein ligase activity	GO:0051438		8.066E-08	3.092E-05
regulation of ligase activity	GO:0051340		1.008E-07	3.311E-05
proteasomal ubiquitin-dependent protein catabolic process	GO:0043161		1.309E-07	3.764E-05
base-excision repair	GO:0006284		3.724E-07	9.517E-05
response to calcium ion	GO:0051592		1.808E-06	4.158E-04
regulation of cyclin-dependent protein kinase activity	GO:0000079		3.796E-06	7.938E-04

Wang file

Name	Accession Number	Link	P-val	Corrected P-val
anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process	GO:0031145		4.346E-08	9.996E-05
positive regulation of ubiquitin-protein ligase activity during mitotic cell cycle	GO:0051437		4.645E-08	5.341E-05
positive regulation of ubiquitin-protein ligase activity	GO:0051443		5.632E-08	4.318E-05
regulation of ubiquitin-protein ligase activity during mitotic cell cycle	GO:0051439		5.632E-08	3.238E-05
positive regulation of ligase activity	GO:0051351		7.182E-08	3.304E-05
regulation of ubiquitin-protein ligase activity	GO:0051438		8.066E-08	3.092E-05
regulation of ligase activity	GO:0051340		1.008E-07	3.311E-05
proteasomal ubiquitin-dependent protein catabolic process	GO:0043161		1.309E-07	3.764E-05
base-excision repair	GO:0006284		3.724E-07	9.517E-05
response to calcium ion	GO:0051592		1.808E-06	4.158E-04
regulation of cyclin-dependent protein kinase activity	GO:0000079		3.796E-06	7.938E-04

Zhang file

Name	Accession Number	Link	P-val	Corrected P-val
anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process	GO:0031145		4.346E-08	9.996E-05
positive regulation of ubiquitin-protein ligase activity during mitotic cell cycle	GO:0051437		4.645E-08	5.341E-05
positive regulation of ubiquitin-protein ligase activity	GO:0051443		5.632E-08	4.318E-05
regulation of ubiquitin-protein ligase activity during mitotic cell cycle	GO:0051439		5.632E-08	3.238E-05
positive regulation of ligase activity	GO:0051351		7.182E-08	3.304E-05
regulation of ubiquitin-protein ligase activity	GO:0051438		8.066E-08	3.092E-05
regulation of ligase activity	GO:0051340		1.008E-07	3.311E-05
proteasomal ubiquitin-dependent protein catabolic process	GO:0043161		1.309E-07	3.764E-05
base-excision repair	GO:0006284		3.724E-07	9.517E-05
response to calcium ion	GO:0051592		1.808E-06	4.158E-04
regulation of cyclin-dependent protein kinase activity	GO:0000079		3.796E-06	7.938E-04