Study run-b1
Study informations
127 subnetworks in total page | file
236 genes associated page | file
Enriched GO terms page
General informations
General Index page
Study Index page
Subnetwork 54583-6-real
score
| Dataset | Score | P-val 1 | P-val 2 | P-val 3 |
|---|
| Desmedt | 0.1611 | 1.584e-02 | 6.051e-03 | 8.373e-02 |
|---|
| IPC-NIBC-129 | 0.2587 | 1.119e-01 | 9.977e-02 | 4.702e-01 |
|---|
| Ivshina_GPL96-GPL97 | 0.2248 | 9.983e-03 | 6.071e-03 | 1.242e-01 |
|---|
| Loi_GPL570 | 0.2089 | 1.510e-01 | 1.828e-01 | 5.010e-01 |
|---|
| Loi_GPL96-GPL97 | 0.1683 | 1.453e-02 | 8.097e-03 | 2.002e-01 |
|---|
| Pawitan_GPL96-GPL97 | 0.3561 | 3.418e-02 | 1.374e-02 | 2.306e-01 |
|---|
| Schmidt | 0.1788 | 2.342e-02 | 2.493e-02 | 1.536e-01 |
|---|
| Sotiriou | 0.2744 | 1.060e-01 | 4.546e-02 | 5.868e-01 |
|---|
| Wang | 0.2221 | 3.259e-02 | 2.024e-02 | 1.293e-01 |
|---|
| Zhang | 0.3522 | 4.170e-03 | 1.917e-03 | 2.269e-02 |
|---|
Expression data for subnetwork 54583-6-real in each dataset
Desmedt |
IPC-NIBC-129 |
Ivshina_GPL96-GPL97 |
Loi_GPL570 |
Loi_GPL96-GPL97 |
Pawitan_GPL96-GPL97 |
Schmidt |
Sotiriou |
Wang |
Zhang |
Subnetwork structure for each dataset
- Desmedt
Score for each gene in subnetwork 54583-6-real in each dataset
| Gene Symbol | Links | Frequency | Frequency Rank | Subnetwork score rank | Global rank |
Desmedt | IPC-NIBC-129 | Ivshina_GPL96-GPL97 | Loi_GPL570 | Loi_GPL96-GPL97 | Pawitan_GPL96-GPL97 | Schmidt | Sotiriou | Wang | Zhang |
|---|
| cdkn3 |   | 18 | 9 | 26 | 16 | 0.114 | 0.269 | 0.199 | 0.136 | 0.193 | 0.323 | 0.186 | 0.198 | 0.134 | 0.271 |
|---|
| cdc2 | | 99 | 1 | 1 | 1 | 0.073 | 0.247 | 0.206 | 0.172 | 0.247 | 0.282 | 0.226 | 0.221 | 0.067 | 0.297 |
|---|
| cdc25a | | 4 | 27 | 32 | 27 | -0.019 | 0.221 | 0.093 | 0.158 | 0.120 | 0.207 | 0.211 | 0.016 | 0.069 | 0.183 |
|---|
| egln1 | | 1 | 90 | 62 | 71 | 0.087 | 0.173 | -0.035 | 0.015 | 0.012 | 0.100 | 0.087 | 0.090 | 0.029 | 0.124 |
|---|
| ard1a | | 1 | 90 | 62 | 71 | 0.019 | 0.141 | 0.130 | 0.229 | 0.128 | 0.218 | 0.139 | 0.061 | -0.015 | 0.014 |
|---|
| hif1a | | 7 | 15 | 16 | 13 | 0.097 | 0.246 | 0.089 | -0.009 | 0.101 | 0.011 | -0.043 | 0.119 | 0.172 | 0.129 |
|---|
| ccnd1 | | 97 | 2 | 8 | 2 | 0.127 | -0.183 | 0.062 | 0.190 | 0.157 | 0.105 | -0.107 | 0.174 | 0.106 | 0.144 |
|---|
GO Enrichment output for subnetwork 54583-6-real in each dataset
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| gas homeostasis | GO:0033483 |  | 3.703E-09 | 8.516E-06 |
|---|
| embryonic placenta development | GO:0001892 | | 1.554E-08 | 1.787E-05 |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 2.088E-08 | 1.601E-05 |
|---|
| placenta development | GO:0001890 | | 6.019E-07 | 3.461E-04 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 2.256E-06 | 1.038E-03 |
|---|
| regulation of hormone biosynthetic process | GO:0046885 | | 3.596E-06 | 1.378E-03 |
|---|
| embryonic hemopoiesis | GO:0035162 | | 3.596E-06 | 1.181E-03 |
|---|
| positive regulation of glycolysis | GO:0045821 | | 3.596E-06 | 1.034E-03 |
|---|
| positive regulation of chemokine production | GO:0032722 | | 3.596E-06 | 9.189E-04 |
|---|
| N-terminal protein amino acid acetylation | GO:0006474 | | 5.392E-06 | 1.24E-03 |
|---|
| positive regulation of nitric-oxide synthase activity | GO:0051000 | | 5.392E-06 | 1.127E-03 |
|---|
IPC-NIBC-129 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| oxygen homeostasis | GO:0032364 | | 3.078E-13 | 7.519E-10 |
|---|
| gas homeostasis | GO:0033483 | | 1.436E-12 | 1.754E-09 |
|---|
| embryonic placenta development | GO:0001892 | | 1.014E-11 | 8.258E-09 |
|---|
| placenta development | GO:0001890 | | 1.067E-09 | 6.514E-07 |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 8.003E-09 | 3.91E-06 |
|---|
| response to hypoxia | GO:0001666 | | 3.351E-08 | 1.364E-05 |
|---|
| response to oxygen levels | GO:0070482 | | 3.699E-08 | 1.291E-05 |
|---|
| negative regulation of transcription regulator activity | GO:0090048 | | 2.452E-07 | 7.487E-05 |
|---|
| negative regulation of DNA binding | GO:0043392 | | 4.305E-07 | 1.169E-04 |
|---|
| negative regulation of binding | GO:0051100 | | 5.506E-07 | 1.345E-04 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 9.129E-07 | 2.028E-04 |
|---|
Ivshina_GPL96-GPL97 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| oxygen homeostasis | GO:0032364 | | 3.054E-16 | 7.347E-13 |
|---|
| gas homeostasis | GO:0033483 | | 1.831E-15 | 2.203E-12 |
|---|
| embryonic placenta development | GO:0001892 | | 1.868E-14 | 1.498E-11 |
|---|
| placenta development | GO:0001890 | | 4.016E-12 | 2.416E-09 |
|---|
| response to hypoxia | GO:0001666 | | 3.65E-10 | 1.756E-07 |
|---|
| response to oxygen levels | GO:0070482 | | 4.134E-10 | 1.658E-07 |
|---|
| negative regulation of transcription regulator activity | GO:0090048 | | 1.243E-09 | 4.273E-07 |
|---|
| negative regulation of DNA binding | GO:0043392 | | 2.605E-09 | 7.835E-07 |
|---|
| negative regulation of binding | GO:0051100 | | 3.602E-09 | 9.629E-07 |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 1.549E-08 | 3.727E-06 |
|---|
| regulation of transcription factor activity | GO:0051090 | | 4.49E-08 | 9.82E-06 |
|---|
Loi_GPL570 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| oxygen homeostasis | GO:0032364 | | 3.078E-13 | 7.519E-10 |
|---|
| gas homeostasis | GO:0033483 | | 1.436E-12 | 1.754E-09 |
|---|
| embryonic placenta development | GO:0001892 | | 1.014E-11 | 8.258E-09 |
|---|
| placenta development | GO:0001890 | | 1.067E-09 | 6.514E-07 |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 8.003E-09 | 3.91E-06 |
|---|
| response to hypoxia | GO:0001666 | | 3.351E-08 | 1.364E-05 |
|---|
| response to oxygen levels | GO:0070482 | | 3.699E-08 | 1.291E-05 |
|---|
| negative regulation of transcription regulator activity | GO:0090048 | | 2.452E-07 | 7.487E-05 |
|---|
| negative regulation of DNA binding | GO:0043392 | | 4.305E-07 | 1.169E-04 |
|---|
| negative regulation of binding | GO:0051100 | | 5.506E-07 | 1.345E-04 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 9.129E-07 | 2.028E-04 |
|---|
Loi_GPL96-GPL97 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| oxygen homeostasis | GO:0032364 | | 3.054E-16 | 7.347E-13 |
|---|
| gas homeostasis | GO:0033483 | | 1.831E-15 | 2.203E-12 |
|---|
| embryonic placenta development | GO:0001892 | | 1.868E-14 | 1.498E-11 |
|---|
| placenta development | GO:0001890 | | 4.016E-12 | 2.416E-09 |
|---|
| response to hypoxia | GO:0001666 | | 3.65E-10 | 1.756E-07 |
|---|
| response to oxygen levels | GO:0070482 | | 4.134E-10 | 1.658E-07 |
|---|
| negative regulation of transcription regulator activity | GO:0090048 | | 1.243E-09 | 4.273E-07 |
|---|
| negative regulation of DNA binding | GO:0043392 | | 2.605E-09 | 7.835E-07 |
|---|
| negative regulation of binding | GO:0051100 | | 3.602E-09 | 9.629E-07 |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 1.549E-08 | 3.727E-06 |
|---|
| regulation of transcription factor activity | GO:0051090 | | 4.49E-08 | 9.82E-06 |
|---|
Pawitan_GPL96-GPL97 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| oxygen homeostasis | GO:0032364 | | 3.054E-16 | 7.347E-13 |
|---|
| gas homeostasis | GO:0033483 | | 1.831E-15 | 2.203E-12 |
|---|
| embryonic placenta development | GO:0001892 | | 1.868E-14 | 1.498E-11 |
|---|
| placenta development | GO:0001890 | | 4.016E-12 | 2.416E-09 |
|---|
| response to hypoxia | GO:0001666 | | 3.65E-10 | 1.756E-07 |
|---|
| response to oxygen levels | GO:0070482 | | 4.134E-10 | 1.658E-07 |
|---|
| negative regulation of transcription regulator activity | GO:0090048 | | 1.243E-09 | 4.273E-07 |
|---|
| negative regulation of DNA binding | GO:0043392 | | 2.605E-09 | 7.835E-07 |
|---|
| negative regulation of binding | GO:0051100 | | 3.602E-09 | 9.629E-07 |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 1.549E-08 | 3.727E-06 |
|---|
| regulation of transcription factor activity | GO:0051090 | | 4.49E-08 | 9.82E-06 |
|---|
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| gas homeostasis | GO:0033483 | | 3.703E-09 | 8.516E-06 |
|---|
| embryonic placenta development | GO:0001892 | | 1.554E-08 | 1.787E-05 |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 2.088E-08 | 1.601E-05 |
|---|
| placenta development | GO:0001890 | | 6.019E-07 | 3.461E-04 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 2.256E-06 | 1.038E-03 |
|---|
| regulation of hormone biosynthetic process | GO:0046885 | | 3.596E-06 | 1.378E-03 |
|---|
| embryonic hemopoiesis | GO:0035162 | | 3.596E-06 | 1.181E-03 |
|---|
| positive regulation of glycolysis | GO:0045821 | | 3.596E-06 | 1.034E-03 |
|---|
| positive regulation of chemokine production | GO:0032722 | | 3.596E-06 | 9.189E-04 |
|---|
| N-terminal protein amino acid acetylation | GO:0006474 | | 5.392E-06 | 1.24E-03 |
|---|
| positive regulation of nitric-oxide synthase activity | GO:0051000 | | 5.392E-06 | 1.127E-03 |
|---|
Sotiriou file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| gas homeostasis | GO:0033483 | | 3.703E-09 | 8.516E-06 |
|---|
| embryonic placenta development | GO:0001892 | | 1.554E-08 | 1.787E-05 |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 2.088E-08 | 1.601E-05 |
|---|
| placenta development | GO:0001890 | | 6.019E-07 | 3.461E-04 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 2.256E-06 | 1.038E-03 |
|---|
| regulation of hormone biosynthetic process | GO:0046885 | | 3.596E-06 | 1.378E-03 |
|---|
| embryonic hemopoiesis | GO:0035162 | | 3.596E-06 | 1.181E-03 |
|---|
| positive regulation of glycolysis | GO:0045821 | | 3.596E-06 | 1.034E-03 |
|---|
| positive regulation of chemokine production | GO:0032722 | | 3.596E-06 | 9.189E-04 |
|---|
| N-terminal protein amino acid acetylation | GO:0006474 | | 5.392E-06 | 1.24E-03 |
|---|
| positive regulation of nitric-oxide synthase activity | GO:0051000 | | 5.392E-06 | 1.127E-03 |
|---|
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| gas homeostasis | GO:0033483 | | 3.703E-09 | 8.516E-06 |
|---|
| embryonic placenta development | GO:0001892 | | 1.554E-08 | 1.787E-05 |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 2.088E-08 | 1.601E-05 |
|---|
| placenta development | GO:0001890 | | 6.019E-07 | 3.461E-04 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 2.256E-06 | 1.038E-03 |
|---|
| regulation of hormone biosynthetic process | GO:0046885 | | 3.596E-06 | 1.378E-03 |
|---|
| embryonic hemopoiesis | GO:0035162 | | 3.596E-06 | 1.181E-03 |
|---|
| positive regulation of glycolysis | GO:0045821 | | 3.596E-06 | 1.034E-03 |
|---|
| positive regulation of chemokine production | GO:0032722 | | 3.596E-06 | 9.189E-04 |
|---|
| N-terminal protein amino acid acetylation | GO:0006474 | | 5.392E-06 | 1.24E-03 |
|---|
| positive regulation of nitric-oxide synthase activity | GO:0051000 | | 5.392E-06 | 1.127E-03 |
|---|
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| gas homeostasis | GO:0033483 | | 3.703E-09 | 8.516E-06 |
|---|
| embryonic placenta development | GO:0001892 | | 1.554E-08 | 1.787E-05 |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 2.088E-08 | 1.601E-05 |
|---|
| placenta development | GO:0001890 | | 6.019E-07 | 3.461E-04 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 2.256E-06 | 1.038E-03 |
|---|
| regulation of hormone biosynthetic process | GO:0046885 | | 3.596E-06 | 1.378E-03 |
|---|
| embryonic hemopoiesis | GO:0035162 | | 3.596E-06 | 1.181E-03 |
|---|
| positive regulation of glycolysis | GO:0045821 | | 3.596E-06 | 1.034E-03 |
|---|
| positive regulation of chemokine production | GO:0032722 | | 3.596E-06 | 9.189E-04 |
|---|
| N-terminal protein amino acid acetylation | GO:0006474 | | 5.392E-06 | 1.24E-03 |
|---|
| positive regulation of nitric-oxide synthase activity | GO:0051000 | | 5.392E-06 | 1.127E-03 |
|---|
