Study run-b1

Study informations

127 subnetworks in total page | file

236 genes associated page | file

Enriched GO terms page

General informations

General Index page

Study Index page

Subnetwork 5426-6-real

score

Dataset	Score	P-val 1	P-val 2	P-val 3
Desmedt	0.1523	1.658e-02	6.440e-03	8.678e-02
IPC-NIBC-129	0.2092	1.226e-01	1.107e-01	5.027e-01
Ivshina_GPL96-GPL97	0.2226	2.677e-02	1.932e-02	2.814e-01
Loi_GPL570	0.2014	1.290e-01	1.583e-01	4.521e-01
Loi_GPL96-GPL97	0.1912	2.040e-02	1.270e-02	2.806e-01
Pawitan_GPL96-GPL97	0.3505	8.824e-02	4.637e-02	4.581e-01
Schmidt	0.1910	3.333e-02	3.519e-02	2.055e-01
Sotiriou	0.2520	7.331e-02	2.686e-02	4.707e-01
Wang	0.1852	6.161e-02	4.573e-02	2.111e-01
Zhang	0.2664	4.586e-03	2.132e-03	2.457e-02

Expression data for subnetwork 5426-6-real in each dataset

Desmedt | IPC-NIBC-129 | Ivshina_GPL96-GPL97 | Loi_GPL570 | Loi_GPL96-GPL97 | Pawitan_GPL96-GPL97 | Schmidt | Sotiriou | Wang | Zhang |

Subnetwork structure for each dataset

Desmedt IPC-NIBC-129 Ivshina_GPL96-GPL97 Loi_GPL570 Loi_GPL96-GPL97 Pawitan_GPL96-GPL97 Schmidt Sotiriou Wang Zhang

Desmedt

Score for each gene in subnetwork 5426-6-real in each dataset

Gene Symbol	Links	Frequency	Frequency Rank	Subnetwork score rank	Global rank	Desmedt	IPC-NIBC-129	Ivshina_GPL96-GPL97	Loi_GPL570	Loi_GPL96-GPL97	Pawitan_GPL96-GPL97	Schmidt	Sotiriou	Wang	Zhang
cdkn3		18	9	26	16	0.114	0.269	0.199	0.136	0.193	0.323	0.186	0.198	0.134	0.271
pcna		39	3	8	3	0.096	0.202	0.109	0.180	0.118	0.256	0.151	0.059	0.162	0.123
fen1		7	15	8	6	0.045	0.194	0.169	0.196	0.136	0.332	0.221	0.144	0.106	0.056
cdc2		99	1	1	1	0.073	0.247	0.206	0.172	0.247	0.282	0.226	0.221	0.067	0.297
pole		3	39	171	151	0.073	0.135	0.081	-0.205	0.081	0.139	0.145	0.105	0.068	-0.014
ccnd1		97	2	8	2	0.127	-0.183	0.062	0.190	0.157	0.105	-0.107	0.174	0.106	0.144

GO Enrichment output for subnetwork 5426-6-real in each dataset

Desmedt file

Name	Accession Number	Link	P-val	Corrected P-val
G1/S transition of mitotic cell cycle	GO:0000082		6.59E-09	1.516E-05
nucleotide-excision repair. DNA gap filling	GO:0006297		7.518E-08	8.646E-05
interphase of mitotic cell cycle	GO:0051329		1.121E-07	8.592E-05
interphase	GO:0051325		1.23E-07	7.072E-05
response to UV	GO:0009411		2.02E-06	9.291E-04
regulation of cyclin-dependent protein kinase activity	GO:0000079		2.767E-06	1.061E-03
nucleotide-excision repair	GO:0006289		2.935E-06	9.644E-04
positive regulation of cyclin-dependent protein kinase activity	GO:0045737		6.175E-06	1.775E-03
phosphoinositide-mediated signaling	GO:0048015		7.548E-06	1.929E-03
DNA synthesis during DNA repair	GO:0000731		8.231E-06	1.893E-03
UV protection	GO:0009650		1.322E-05	2.764E-03

IPC-NIBC-129 file

Name	Accession Number	Link	P-val	Corrected P-val
G1/S transition of mitotic cell cycle	GO:0000082		1.206E-09	2.945E-06
nucleotide-excision repair. DNA gap filling	GO:0006297		1.642E-08	2.006E-05
interphase of mitotic cell cycle	GO:0051329		2.644E-08	2.153E-05
response to UV	GO:0009411		7.637E-07	4.664E-04
regulation of cyclin-dependent protein kinase activity	GO:0000079		8.514E-07	4.16E-04
nucleotide-excision repair	GO:0006289		8.514E-07	3.467E-04
phosphoinositide-mediated signaling	GO:0048015		1.958E-06	6.834E-04
positive regulation of cyclin-dependent protein kinase activity	GO:0045737		2.922E-06	8.924E-04
DNA synthesis during DNA repair	GO:0000731		3.757E-06	1.02E-03
UV protection	GO:0009650		5.737E-06	1.402E-03
cellular response to unfolded protein	GO:0034620		1.979E-05	4.394E-03

Ivshina_GPL96-GPL97 file

Name	Accession Number	Link	P-val	Corrected P-val
G1/S transition of mitotic cell cycle	GO:0000082		9.932E-10	2.39E-06
nucleotide-excision repair. DNA gap filling	GO:0006297		1.473E-08	1.772E-05
interphase of mitotic cell cycle	GO:0051329		1.923E-08	1.542E-05
interphase	GO:0051325		2.18E-08	1.312E-05
response to UV	GO:0009411		6.121E-07	2.946E-04
nucleotide-excision repair	GO:0006289		7.24E-07	2.903E-04
regulation of cyclin-dependent protein kinase activity	GO:0000079		7.641E-07	2.626E-04
phosphoinositide-mediated signaling	GO:0048015		1.758E-06	5.286E-04
positive regulation of cyclin-dependent protein kinase activity	GO:0045737		2.775E-06	7.42E-04
DNA synthesis during DNA repair	GO:0000731		3.568E-06	8.584E-04
UV protection	GO:0009650		5.449E-06	1.192E-03

Loi_GPL570 file

Name	Accession Number	Link	P-val	Corrected P-val
G1/S transition of mitotic cell cycle	GO:0000082		1.206E-09	2.945E-06
nucleotide-excision repair. DNA gap filling	GO:0006297		1.642E-08	2.006E-05
interphase of mitotic cell cycle	GO:0051329		2.644E-08	2.153E-05
response to UV	GO:0009411		7.637E-07	4.664E-04
regulation of cyclin-dependent protein kinase activity	GO:0000079		8.514E-07	4.16E-04
nucleotide-excision repair	GO:0006289		8.514E-07	3.467E-04
phosphoinositide-mediated signaling	GO:0048015		1.958E-06	6.834E-04
positive regulation of cyclin-dependent protein kinase activity	GO:0045737		2.922E-06	8.924E-04
DNA synthesis during DNA repair	GO:0000731		3.757E-06	1.02E-03
UV protection	GO:0009650		5.737E-06	1.402E-03
cellular response to unfolded protein	GO:0034620		1.979E-05	4.394E-03

Loi_GPL96-GPL97 file

Name	Accession Number	Link	P-val	Corrected P-val
G1/S transition of mitotic cell cycle	GO:0000082		9.932E-10	2.39E-06
nucleotide-excision repair. DNA gap filling	GO:0006297		1.473E-08	1.772E-05
interphase of mitotic cell cycle	GO:0051329		1.923E-08	1.542E-05
interphase	GO:0051325		2.18E-08	1.312E-05
response to UV	GO:0009411		6.121E-07	2.946E-04
nucleotide-excision repair	GO:0006289		7.24E-07	2.903E-04
regulation of cyclin-dependent protein kinase activity	GO:0000079		7.641E-07	2.626E-04
phosphoinositide-mediated signaling	GO:0048015		1.758E-06	5.286E-04
positive regulation of cyclin-dependent protein kinase activity	GO:0045737		2.775E-06	7.42E-04
DNA synthesis during DNA repair	GO:0000731		3.568E-06	8.584E-04
UV protection	GO:0009650		5.449E-06	1.192E-03

Pawitan_GPL96-GPL97 file

Name	Accession Number	Link	P-val	Corrected P-val
G1/S transition of mitotic cell cycle	GO:0000082		9.932E-10	2.39E-06
nucleotide-excision repair. DNA gap filling	GO:0006297		1.473E-08	1.772E-05
interphase of mitotic cell cycle	GO:0051329		1.923E-08	1.542E-05
interphase	GO:0051325		2.18E-08	1.312E-05
response to UV	GO:0009411		6.121E-07	2.946E-04
nucleotide-excision repair	GO:0006289		7.24E-07	2.903E-04
regulation of cyclin-dependent protein kinase activity	GO:0000079		7.641E-07	2.626E-04
phosphoinositide-mediated signaling	GO:0048015		1.758E-06	5.286E-04
positive regulation of cyclin-dependent protein kinase activity	GO:0045737		2.775E-06	7.42E-04
DNA synthesis during DNA repair	GO:0000731		3.568E-06	8.584E-04
UV protection	GO:0009650		5.449E-06	1.192E-03

Schmidt file

Name	Accession Number	Link	P-val	Corrected P-val
G1/S transition of mitotic cell cycle	GO:0000082		6.59E-09	1.516E-05
nucleotide-excision repair. DNA gap filling	GO:0006297		7.518E-08	8.646E-05
interphase of mitotic cell cycle	GO:0051329		1.121E-07	8.592E-05
interphase	GO:0051325		1.23E-07	7.072E-05
response to UV	GO:0009411		2.02E-06	9.291E-04
regulation of cyclin-dependent protein kinase activity	GO:0000079		2.767E-06	1.061E-03
nucleotide-excision repair	GO:0006289		2.935E-06	9.644E-04
positive regulation of cyclin-dependent protein kinase activity	GO:0045737		6.175E-06	1.775E-03
phosphoinositide-mediated signaling	GO:0048015		7.548E-06	1.929E-03
DNA synthesis during DNA repair	GO:0000731		8.231E-06	1.893E-03
UV protection	GO:0009650		1.322E-05	2.764E-03

Sotiriou file

Name	Accession Number	Link	P-val	Corrected P-val
G1/S transition of mitotic cell cycle	GO:0000082		6.59E-09	1.516E-05
nucleotide-excision repair. DNA gap filling	GO:0006297		7.518E-08	8.646E-05
interphase of mitotic cell cycle	GO:0051329		1.121E-07	8.592E-05
interphase	GO:0051325		1.23E-07	7.072E-05
response to UV	GO:0009411		2.02E-06	9.291E-04
regulation of cyclin-dependent protein kinase activity	GO:0000079		2.767E-06	1.061E-03
nucleotide-excision repair	GO:0006289		2.935E-06	9.644E-04
positive regulation of cyclin-dependent protein kinase activity	GO:0045737		6.175E-06	1.775E-03
phosphoinositide-mediated signaling	GO:0048015		7.548E-06	1.929E-03
DNA synthesis during DNA repair	GO:0000731		8.231E-06	1.893E-03
UV protection	GO:0009650		1.322E-05	2.764E-03

Wang file

Name	Accession Number	Link	P-val	Corrected P-val
G1/S transition of mitotic cell cycle	GO:0000082		6.59E-09	1.516E-05
nucleotide-excision repair. DNA gap filling	GO:0006297		7.518E-08	8.646E-05
interphase of mitotic cell cycle	GO:0051329		1.121E-07	8.592E-05
interphase	GO:0051325		1.23E-07	7.072E-05
response to UV	GO:0009411		2.02E-06	9.291E-04
regulation of cyclin-dependent protein kinase activity	GO:0000079		2.767E-06	1.061E-03
nucleotide-excision repair	GO:0006289		2.935E-06	9.644E-04
positive regulation of cyclin-dependent protein kinase activity	GO:0045737		6.175E-06	1.775E-03
phosphoinositide-mediated signaling	GO:0048015		7.548E-06	1.929E-03
DNA synthesis during DNA repair	GO:0000731		8.231E-06	1.893E-03
UV protection	GO:0009650		1.322E-05	2.764E-03

Zhang file

Name	Accession Number	Link	P-val	Corrected P-val
G1/S transition of mitotic cell cycle	GO:0000082		6.59E-09	1.516E-05
nucleotide-excision repair. DNA gap filling	GO:0006297		7.518E-08	8.646E-05
interphase of mitotic cell cycle	GO:0051329		1.121E-07	8.592E-05
interphase	GO:0051325		1.23E-07	7.072E-05
response to UV	GO:0009411		2.02E-06	9.291E-04
regulation of cyclin-dependent protein kinase activity	GO:0000079		2.767E-06	1.061E-03
nucleotide-excision repair	GO:0006289		2.935E-06	9.644E-04
positive regulation of cyclin-dependent protein kinase activity	GO:0045737		6.175E-06	1.775E-03
phosphoinositide-mediated signaling	GO:0048015		7.548E-06	1.929E-03
DNA synthesis during DNA repair	GO:0000731		8.231E-06	1.893E-03
UV protection	GO:0009650		1.322E-05	2.764E-03