Study run-b1

Study informations

127 subnetworks in total page | file

236 genes associated page | file

Enriched GO terms page

General informations

General Index page

Study Index page

Subnetwork 5425-6-real

score

Dataset	Score	P-val 1	P-val 2	P-val 3
Desmedt	0.1659	1.829e-02	7.359e-03	9.368e-02
IPC-NIBC-129	0.1905	7.093e-02	5.959e-02	3.269e-01
Ivshina_GPL96-GPL97	0.2179	3.861e-02	2.963e-02	3.672e-01
Loi_GPL570	0.2453	5.051e-02	6.693e-02	2.267e-01
Loi_GPL96-GPL97	0.1672	1.204e-02	6.298e-03	1.637e-01
Pawitan_GPL96-GPL97	0.3266	7.862e-02	3.998e-02	4.247e-01
Schmidt	0.2618	5.770e-02	6.019e-02	3.140e-01
Sotiriou	0.2169	1.079e-01	4.662e-02	5.926e-01
Wang	0.1984	4.910e-02	3.425e-02	1.777e-01
Zhang	0.2770	6.873e-03	3.349e-03	3.435e-02

Expression data for subnetwork 5425-6-real in each dataset

Desmedt | IPC-NIBC-129 | Ivshina_GPL96-GPL97 | Loi_GPL570 | Loi_GPL96-GPL97 | Pawitan_GPL96-GPL97 | Schmidt | Sotiriou | Wang | Zhang |

Subnetwork structure for each dataset

Desmedt IPC-NIBC-129 Ivshina_GPL96-GPL97 Loi_GPL570 Loi_GPL96-GPL97 Pawitan_GPL96-GPL97 Schmidt Sotiriou Wang Zhang

Desmedt

Score for each gene in subnetwork 5425-6-real in each dataset

Gene Symbol	Links	Frequency	Frequency Rank	Subnetwork score rank	Global rank	Desmedt	IPC-NIBC-129	Ivshina_GPL96-GPL97	Loi_GPL570	Loi_GPL96-GPL97	Pawitan_GPL96-GPL97	Schmidt	Sotiriou	Wang	Zhang
sp1		31	5	16	8	0.054	0.186	0.147	0.242	0.125	0.202	0.284	0.227	0.194	0.091
pold2		3	39	89	70	0.073	0.180	0.204	0.131	0.150	0.186	0.146	0.126	-0.084	0.072
pcna		39	3	8	3	0.096	0.202	0.109	0.180	0.118	0.256	0.151	0.059	0.162	0.123
hdac2		16	10	64	39	0.012	0.245	0.030	0.077	0.070	0.183	0.222	-0.058	0.086	0.133
top2a		22	7	70	46	0.147	0.183	0.185	0.100	0.206	0.309	0.261	0.183	0.072	0.234
eif2s1		13	12	8	4	-0.031	0.151	0.253	0.182	0.098	0.270	0.233	0.038	0.122	0.239
ccnd1		97	2	8	2	0.127	-0.183	0.062	0.190	0.157	0.105	-0.107	0.174	0.106	0.144

GO Enrichment output for subnetwork 5425-6-real in each dataset

Desmedt file

Name	Accession Number	Link	P-val	Corrected P-val
nucleotide-excision repair. DNA gap filling	GO:0006297		1.789E-07	4.114E-04
positive regulation of cell cycle	GO:0045787		4.477E-06	5.148E-03
positive regulation of viral genome replication	GO:0045070		5.098E-06	3.909E-03
regulation of retroviral genome replication	GO:0045091		5.098E-06	2.931E-03
nucleotide-excision repair	GO:0006289		6.951E-06	3.198E-03
DNA topological change	GO:0006265		7.644E-06	2.93E-03
chromosome segregation	GO:0007059		9.184E-06	3.018E-03
positive regulation of cyclin-dependent protein kinase activity	GO:0045737		1.07E-05	3.075E-03
phosphoinositide-mediated signaling	GO:0048015		1.783E-05	4.557E-03
DNA ligation	GO:0006266		1.832E-05	4.214E-03
positive regulation of viral reproduction	GO:0048524		2.289E-05	4.787E-03

IPC-NIBC-129 file

Name	Accession Number	Link	P-val	Corrected P-val
nucleotide-excision repair. DNA gap filling	GO:0006297		2.716E-08	6.634E-05
positive regulation of cell cycle	GO:0045787		8.325E-07	1.017E-03
nucleotide-excision repair	GO:0006289		1.405E-06	1.145E-03
positive regulation of viral genome replication	GO:0045070		1.44E-06	8.793E-04
meiotic chromosome segregation	GO:0045132		1.44E-06	7.034E-04
regulation of retroviral genome replication	GO:0045091		2.159E-06	8.791E-04
establishment of spindle localization	GO:0051293		2.159E-06	7.535E-04
chromosome segregation	GO:0007059		2.296E-06	7.011E-04
phosphoinositide-mediated signaling	GO:0048015		3.23E-06	8.767E-04
positive regulation of cyclin-dependent protein kinase activity	GO:0045737		4.028E-06	9.841E-04
DNA topological change	GO:0006265		4.028E-06	8.947E-04

Ivshina_GPL96-GPL97 file

Name	Accession Number	Link	P-val	Corrected P-val
nucleotide-excision repair. DNA gap filling	GO:0006297		4.462E-08	1.073E-04
positive regulation of cell cycle	GO:0045787		1.366E-06	1.643E-03
positive regulation of viral genome replication	GO:0045070		2.005E-06	1.608E-03
regulation of retroviral genome replication	GO:0045091		2.005E-06	1.206E-03
meiotic chromosome segregation	GO:0045132		2.005E-06	9.648E-04
nucleotide-excision repair	GO:0006289		2.184E-06	8.76E-04
establishment of spindle localization	GO:0051293		3.007E-06	1.033E-03
chromosome segregation	GO:0007059		3.764E-06	1.132E-03
phosphoinositide-mediated signaling	GO:0048015		5.294E-06	1.415E-03
positive regulation of cyclin-dependent protein kinase activity	GO:0045737		5.61E-06	1.35E-03
DNA topological change	GO:0006265		5.61E-06	1.227E-03

Loi_GPL570 file

Name	Accession Number	Link	P-val	Corrected P-val
nucleotide-excision repair. DNA gap filling	GO:0006297		2.716E-08	6.634E-05
positive regulation of cell cycle	GO:0045787		8.325E-07	1.017E-03
nucleotide-excision repair	GO:0006289		1.405E-06	1.145E-03
positive regulation of viral genome replication	GO:0045070		1.44E-06	8.793E-04
meiotic chromosome segregation	GO:0045132		1.44E-06	7.034E-04
regulation of retroviral genome replication	GO:0045091		2.159E-06	8.791E-04
establishment of spindle localization	GO:0051293		2.159E-06	7.535E-04
chromosome segregation	GO:0007059		2.296E-06	7.011E-04
phosphoinositide-mediated signaling	GO:0048015		3.23E-06	8.767E-04
positive regulation of cyclin-dependent protein kinase activity	GO:0045737		4.028E-06	9.841E-04
DNA topological change	GO:0006265		4.028E-06	8.947E-04

Loi_GPL96-GPL97 file

Name	Accession Number	Link	P-val	Corrected P-val
nucleotide-excision repair. DNA gap filling	GO:0006297		4.462E-08	1.073E-04
positive regulation of cell cycle	GO:0045787		1.366E-06	1.643E-03
positive regulation of viral genome replication	GO:0045070		2.005E-06	1.608E-03
regulation of retroviral genome replication	GO:0045091		2.005E-06	1.206E-03
meiotic chromosome segregation	GO:0045132		2.005E-06	9.648E-04
nucleotide-excision repair	GO:0006289		2.184E-06	8.76E-04
establishment of spindle localization	GO:0051293		3.007E-06	1.033E-03
chromosome segregation	GO:0007059		3.764E-06	1.132E-03
phosphoinositide-mediated signaling	GO:0048015		5.294E-06	1.415E-03
positive regulation of cyclin-dependent protein kinase activity	GO:0045737		5.61E-06	1.35E-03
DNA topological change	GO:0006265		5.61E-06	1.227E-03

Pawitan_GPL96-GPL97 file

Name	Accession Number	Link	P-val	Corrected P-val
nucleotide-excision repair. DNA gap filling	GO:0006297		4.462E-08	1.073E-04
positive regulation of cell cycle	GO:0045787		1.366E-06	1.643E-03
positive regulation of viral genome replication	GO:0045070		2.005E-06	1.608E-03
regulation of retroviral genome replication	GO:0045091		2.005E-06	1.206E-03
meiotic chromosome segregation	GO:0045132		2.005E-06	9.648E-04
nucleotide-excision repair	GO:0006289		2.184E-06	8.76E-04
establishment of spindle localization	GO:0051293		3.007E-06	1.033E-03
chromosome segregation	GO:0007059		3.764E-06	1.132E-03
phosphoinositide-mediated signaling	GO:0048015		5.294E-06	1.415E-03
positive regulation of cyclin-dependent protein kinase activity	GO:0045737		5.61E-06	1.35E-03
DNA topological change	GO:0006265		5.61E-06	1.227E-03

Schmidt file

Name	Accession Number	Link	P-val	Corrected P-val
nucleotide-excision repair. DNA gap filling	GO:0006297		1.789E-07	4.114E-04
positive regulation of cell cycle	GO:0045787		4.477E-06	5.148E-03
positive regulation of viral genome replication	GO:0045070		5.098E-06	3.909E-03
regulation of retroviral genome replication	GO:0045091		5.098E-06	2.931E-03
nucleotide-excision repair	GO:0006289		6.951E-06	3.198E-03
DNA topological change	GO:0006265		7.644E-06	2.93E-03
chromosome segregation	GO:0007059		9.184E-06	3.018E-03
positive regulation of cyclin-dependent protein kinase activity	GO:0045737		1.07E-05	3.075E-03
phosphoinositide-mediated signaling	GO:0048015		1.783E-05	4.557E-03
DNA ligation	GO:0006266		1.832E-05	4.214E-03
positive regulation of viral reproduction	GO:0048524		2.289E-05	4.787E-03

Sotiriou file

Name	Accession Number	Link	P-val	Corrected P-val
nucleotide-excision repair. DNA gap filling	GO:0006297		1.789E-07	4.114E-04
positive regulation of cell cycle	GO:0045787		4.477E-06	5.148E-03
positive regulation of viral genome replication	GO:0045070		5.098E-06	3.909E-03
regulation of retroviral genome replication	GO:0045091		5.098E-06	2.931E-03
nucleotide-excision repair	GO:0006289		6.951E-06	3.198E-03
DNA topological change	GO:0006265		7.644E-06	2.93E-03
chromosome segregation	GO:0007059		9.184E-06	3.018E-03
positive regulation of cyclin-dependent protein kinase activity	GO:0045737		1.07E-05	3.075E-03
phosphoinositide-mediated signaling	GO:0048015		1.783E-05	4.557E-03
DNA ligation	GO:0006266		1.832E-05	4.214E-03
positive regulation of viral reproduction	GO:0048524		2.289E-05	4.787E-03

Wang file

Name	Accession Number	Link	P-val	Corrected P-val
nucleotide-excision repair. DNA gap filling	GO:0006297		1.789E-07	4.114E-04
positive regulation of cell cycle	GO:0045787		4.477E-06	5.148E-03
positive regulation of viral genome replication	GO:0045070		5.098E-06	3.909E-03
regulation of retroviral genome replication	GO:0045091		5.098E-06	2.931E-03
nucleotide-excision repair	GO:0006289		6.951E-06	3.198E-03
DNA topological change	GO:0006265		7.644E-06	2.93E-03
chromosome segregation	GO:0007059		9.184E-06	3.018E-03
positive regulation of cyclin-dependent protein kinase activity	GO:0045737		1.07E-05	3.075E-03
phosphoinositide-mediated signaling	GO:0048015		1.783E-05	4.557E-03
DNA ligation	GO:0006266		1.832E-05	4.214E-03
positive regulation of viral reproduction	GO:0048524		2.289E-05	4.787E-03

Zhang file

Name	Accession Number	Link	P-val	Corrected P-val
nucleotide-excision repair. DNA gap filling	GO:0006297		1.789E-07	4.114E-04
positive regulation of cell cycle	GO:0045787		4.477E-06	5.148E-03
positive regulation of viral genome replication	GO:0045070		5.098E-06	3.909E-03
regulation of retroviral genome replication	GO:0045091		5.098E-06	2.931E-03
nucleotide-excision repair	GO:0006289		6.951E-06	3.198E-03
DNA topological change	GO:0006265		7.644E-06	2.93E-03
chromosome segregation	GO:0007059		9.184E-06	3.018E-03
positive regulation of cyclin-dependent protein kinase activity	GO:0045737		1.07E-05	3.075E-03
phosphoinositide-mediated signaling	GO:0048015		1.783E-05	4.557E-03
DNA ligation	GO:0006266		1.832E-05	4.214E-03
positive regulation of viral reproduction	GO:0048524		2.289E-05	4.787E-03