Study run-b1

Study informations

127 subnetworks in total page | file

236 genes associated page | file

Enriched GO terms page

General informations

General Index page

Study Index page

Subnetwork 5424-6-real

score

Dataset	Score	P-val 1	P-val 2	P-val 3
Desmedt	0.1704	1.724e-02	6.791e-03	8.947e-02
IPC-NIBC-129	0.2445	6.638e-02	5.527e-02	3.088e-01
Ivshina_GPL96-GPL97	0.2207	1.328e-02	8.498e-03	1.595e-01
Loi_GPL570	0.2506	9.917e-02	1.244e-01	3.770e-01
Loi_GPL96-GPL97	0.1667	1.011e-02	4.988e-03	1.347e-01
Pawitan_GPL96-GPL97	0.2999	7.030e-02	3.464e-02	3.938e-01
Schmidt	0.2111	3.250e-02	3.434e-02	2.013e-01
Sotiriou	0.2536	1.087e-01	4.712e-02	5.950e-01
Wang	0.2478	2.083e-02	1.133e-02	9.051e-02
Zhang	0.2872	1.079e-02	5.544e-03	4.974e-02

Expression data for subnetwork 5424-6-real in each dataset

Desmedt | IPC-NIBC-129 | Ivshina_GPL96-GPL97 | Loi_GPL570 | Loi_GPL96-GPL97 | Pawitan_GPL96-GPL97 | Schmidt | Sotiriou | Wang | Zhang |

Subnetwork structure for each dataset

Desmedt IPC-NIBC-129 Ivshina_GPL96-GPL97 Loi_GPL570 Loi_GPL96-GPL97 Pawitan_GPL96-GPL97 Schmidt Sotiriou Wang Zhang

Desmedt

Score for each gene in subnetwork 5424-6-real in each dataset

Gene Symbol	Links	Frequency	Frequency Rank	Subnetwork score rank	Global rank	Desmedt	IPC-NIBC-129	Ivshina_GPL96-GPL97	Loi_GPL570	Loi_GPL96-GPL97	Pawitan_GPL96-GPL97	Schmidt	Sotiriou	Wang	Zhang
pold2		3	39	89	70	0.073	0.180	0.204	0.131	0.150	0.186	0.146	0.126	-0.084	0.072
pcna		39	3	8	3	0.096	0.202	0.109	0.180	0.118	0.256	0.151	0.059	0.162	0.123
hif1a		7	15	16	13	0.097	0.246	0.089	-0.009	0.101	0.011	-0.043	0.119	0.172	0.129
ccnd1		97	2	8	2	0.127	-0.183	0.062	0.190	0.157	0.105	-0.107	0.174	0.106	0.144
sp1		31	5	16	8	0.054	0.186	0.147	0.242	0.125	0.202	0.284	0.227	0.194	0.091
cdc2		99	1	1	1	0.073	0.247	0.206	0.172	0.247	0.282	0.226	0.221	0.067	0.297
hdac2		16	10	64	39	0.012	0.245	0.030	0.077	0.070	0.183	0.222	-0.058	0.086	0.133
pold1		2	53	89	81	0.069	0.107	0.160	-0.033	0.102	0.121	0.144	0.148	-0.048	0.006

GO Enrichment output for subnetwork 5424-6-real in each dataset

Desmedt file

Name	Accession Number	Link	P-val	Corrected P-val
nucleotide-excision repair. DNA gap filling	GO:0006297		3.328E-10	7.655E-07
nucleotide-excision repair	GO:0006289		4.878E-08	5.61E-05
base-excision repair	GO:0006284		6.443E-07	4.94E-04
positive regulation of cell cycle	GO:0045787		4.477E-06	2.574E-03
response to UV	GO:0009411		4.787E-06	2.202E-03
regulation of hormone biosynthetic process	GO:0046885		5.098E-06	1.954E-03
embryonic hemopoiesis	GO:0035162		5.098E-06	1.675E-03
positive regulation of glycolysis	GO:0045821		5.098E-06	1.466E-03
maintenance of fidelity during DNA-dependent DNA replication	GO:0045005		5.098E-06	1.303E-03
positive regulation of chemokine production	GO:0032722		5.098E-06	1.173E-03
positive regulation of nitric-oxide synthase activity	GO:0051000		7.644E-06	1.598E-03

IPC-NIBC-129 file

Name	Accession Number	Link	P-val	Corrected P-val
nucleotide-excision repair. DNA gap filling	GO:0006297		2.732E-11	6.675E-08
nucleotide-excision repair	GO:0006289		5.876E-09	7.177E-06
base-excision repair	GO:0006284		1.584E-07	1.29E-04
positive regulation of cell cycle	GO:0045787		8.325E-07	5.085E-04
response to UV	GO:0009411		1.261E-06	6.16E-04
hemoglobin biosynthetic process	GO:0042541		1.44E-06	5.862E-04
positive regulation of glycolysis	GO:0045821		1.44E-06	5.024E-04
mRNA transcription	GO:0009299		1.44E-06	4.396E-04
maintenance of fidelity during DNA-dependent DNA replication	GO:0045005		1.44E-06	3.908E-04
meiotic chromosome segregation	GO:0045132		1.44E-06	3.517E-04
positive regulation of chemokine production	GO:0032722		1.44E-06	3.197E-04

Ivshina_GPL96-GPL97 file

Name	Accession Number	Link	P-val	Corrected P-val
nucleotide-excision repair. DNA gap filling	GO:0006297		5.299E-11	1.275E-07
nucleotide-excision repair	GO:0006289		1.058E-08	1.273E-05
base-excision repair	GO:0006284		2.323E-07	1.863E-04
positive regulation of cell cycle	GO:0045787		1.366E-06	8.216E-04
response to UV	GO:0009411		1.848E-06	8.891E-04
hemoglobin biosynthetic process	GO:0042541		2.005E-06	8.04E-04
positive regulation of glycolysis	GO:0045821		2.005E-06	6.892E-04
mRNA transcription	GO:0009299		2.005E-06	6.03E-04
maintenance of fidelity during DNA-dependent DNA replication	GO:0045005		2.005E-06	5.36E-04
meiotic chromosome segregation	GO:0045132		2.005E-06	4.824E-04
positive regulation of chemokine production	GO:0032722		2.005E-06	4.386E-04

Loi_GPL570 file

Name	Accession Number	Link	P-val	Corrected P-val
nucleotide-excision repair. DNA gap filling	GO:0006297		2.732E-11	6.675E-08
nucleotide-excision repair	GO:0006289		5.876E-09	7.177E-06
base-excision repair	GO:0006284		1.584E-07	1.29E-04
positive regulation of cell cycle	GO:0045787		8.325E-07	5.085E-04
response to UV	GO:0009411		1.261E-06	6.16E-04
hemoglobin biosynthetic process	GO:0042541		1.44E-06	5.862E-04
positive regulation of glycolysis	GO:0045821		1.44E-06	5.024E-04
mRNA transcription	GO:0009299		1.44E-06	4.396E-04
maintenance of fidelity during DNA-dependent DNA replication	GO:0045005		1.44E-06	3.908E-04
meiotic chromosome segregation	GO:0045132		1.44E-06	3.517E-04
positive regulation of chemokine production	GO:0032722		1.44E-06	3.197E-04

Loi_GPL96-GPL97 file

Name	Accession Number	Link	P-val	Corrected P-val
nucleotide-excision repair. DNA gap filling	GO:0006297		5.299E-11	1.275E-07
nucleotide-excision repair	GO:0006289		1.058E-08	1.273E-05
base-excision repair	GO:0006284		2.323E-07	1.863E-04
positive regulation of cell cycle	GO:0045787		1.366E-06	8.216E-04
response to UV	GO:0009411		1.848E-06	8.891E-04
hemoglobin biosynthetic process	GO:0042541		2.005E-06	8.04E-04
positive regulation of glycolysis	GO:0045821		2.005E-06	6.892E-04
mRNA transcription	GO:0009299		2.005E-06	6.03E-04
maintenance of fidelity during DNA-dependent DNA replication	GO:0045005		2.005E-06	5.36E-04
meiotic chromosome segregation	GO:0045132		2.005E-06	4.824E-04
positive regulation of chemokine production	GO:0032722		2.005E-06	4.386E-04

Pawitan_GPL96-GPL97 file

Name	Accession Number	Link	P-val	Corrected P-val
nucleotide-excision repair. DNA gap filling	GO:0006297		5.299E-11	1.275E-07
nucleotide-excision repair	GO:0006289		1.058E-08	1.273E-05
base-excision repair	GO:0006284		2.323E-07	1.863E-04
positive regulation of cell cycle	GO:0045787		1.366E-06	8.216E-04
response to UV	GO:0009411		1.848E-06	8.891E-04
hemoglobin biosynthetic process	GO:0042541		2.005E-06	8.04E-04
positive regulation of glycolysis	GO:0045821		2.005E-06	6.892E-04
mRNA transcription	GO:0009299		2.005E-06	6.03E-04
maintenance of fidelity during DNA-dependent DNA replication	GO:0045005		2.005E-06	5.36E-04
meiotic chromosome segregation	GO:0045132		2.005E-06	4.824E-04
positive regulation of chemokine production	GO:0032722		2.005E-06	4.386E-04

Schmidt file

Name	Accession Number	Link	P-val	Corrected P-val
nucleotide-excision repair. DNA gap filling	GO:0006297		3.328E-10	7.655E-07
nucleotide-excision repair	GO:0006289		4.878E-08	5.61E-05
base-excision repair	GO:0006284		6.443E-07	4.94E-04
positive regulation of cell cycle	GO:0045787		4.477E-06	2.574E-03
response to UV	GO:0009411		4.787E-06	2.202E-03
regulation of hormone biosynthetic process	GO:0046885		5.098E-06	1.954E-03
embryonic hemopoiesis	GO:0035162		5.098E-06	1.675E-03
positive regulation of glycolysis	GO:0045821		5.098E-06	1.466E-03
maintenance of fidelity during DNA-dependent DNA replication	GO:0045005		5.098E-06	1.303E-03
positive regulation of chemokine production	GO:0032722		5.098E-06	1.173E-03
positive regulation of nitric-oxide synthase activity	GO:0051000		7.644E-06	1.598E-03

Sotiriou file

Name	Accession Number	Link	P-val	Corrected P-val
nucleotide-excision repair. DNA gap filling	GO:0006297		3.328E-10	7.655E-07
nucleotide-excision repair	GO:0006289		4.878E-08	5.61E-05
base-excision repair	GO:0006284		6.443E-07	4.94E-04
positive regulation of cell cycle	GO:0045787		4.477E-06	2.574E-03
response to UV	GO:0009411		4.787E-06	2.202E-03
regulation of hormone biosynthetic process	GO:0046885		5.098E-06	1.954E-03
embryonic hemopoiesis	GO:0035162		5.098E-06	1.675E-03
positive regulation of glycolysis	GO:0045821		5.098E-06	1.466E-03
maintenance of fidelity during DNA-dependent DNA replication	GO:0045005		5.098E-06	1.303E-03
positive regulation of chemokine production	GO:0032722		5.098E-06	1.173E-03
positive regulation of nitric-oxide synthase activity	GO:0051000		7.644E-06	1.598E-03

Wang file

Name	Accession Number	Link	P-val	Corrected P-val
nucleotide-excision repair. DNA gap filling	GO:0006297		3.328E-10	7.655E-07
nucleotide-excision repair	GO:0006289		4.878E-08	5.61E-05
base-excision repair	GO:0006284		6.443E-07	4.94E-04
positive regulation of cell cycle	GO:0045787		4.477E-06	2.574E-03
response to UV	GO:0009411		4.787E-06	2.202E-03
regulation of hormone biosynthetic process	GO:0046885		5.098E-06	1.954E-03
embryonic hemopoiesis	GO:0035162		5.098E-06	1.675E-03
positive regulation of glycolysis	GO:0045821		5.098E-06	1.466E-03
maintenance of fidelity during DNA-dependent DNA replication	GO:0045005		5.098E-06	1.303E-03
positive regulation of chemokine production	GO:0032722		5.098E-06	1.173E-03
positive regulation of nitric-oxide synthase activity	GO:0051000		7.644E-06	1.598E-03

Zhang file

Name	Accession Number	Link	P-val	Corrected P-val
nucleotide-excision repair. DNA gap filling	GO:0006297		3.328E-10	7.655E-07
nucleotide-excision repair	GO:0006289		4.878E-08	5.61E-05
base-excision repair	GO:0006284		6.443E-07	4.94E-04
positive regulation of cell cycle	GO:0045787		4.477E-06	2.574E-03
response to UV	GO:0009411		4.787E-06	2.202E-03
regulation of hormone biosynthetic process	GO:0046885		5.098E-06	1.954E-03
embryonic hemopoiesis	GO:0035162		5.098E-06	1.675E-03
positive regulation of glycolysis	GO:0045821		5.098E-06	1.466E-03
maintenance of fidelity during DNA-dependent DNA replication	GO:0045005		5.098E-06	1.303E-03
positive regulation of chemokine production	GO:0032722		5.098E-06	1.173E-03
positive regulation of nitric-oxide synthase activity	GO:0051000		7.644E-06	1.598E-03