Study run-b1

Study informations

127 subnetworks in total page | file

236 genes associated page | file

Enriched GO terms page

General informations

General Index page

Study Index page

Subnetwork 51-5-real

score

Dataset	Score	P-val 1	P-val 2	P-val 3
Desmedt	0.1626	2.339e-02	1.027e-02	1.133e-01
IPC-NIBC-129	0.2145	1.934e-01	1.842e-01	6.736e-01
Ivshina_GPL96-GPL97	0.2061	2.408e-02	1.707e-02	2.595e-01
Loi_GPL570	0.1641	4.418e-02	5.917e-02	2.037e-01
Loi_GPL96-GPL97	0.1674	1.371e-02	7.496e-03	1.884e-01
Pawitan_GPL96-GPL97	0.3078	7.424e-02	3.715e-02	4.087e-01
Schmidt	0.2717	3.594e-02	3.789e-02	2.183e-01
Sotiriou	0.2472	1.075e-01	4.639e-02	5.914e-01
Wang	0.1933	5.368e-02	3.838e-02	1.902e-01
Zhang	0.2822	9.440e-03	4.774e-03	4.459e-02

Expression data for subnetwork 51-5-real in each dataset

Desmedt | IPC-NIBC-129 | Ivshina_GPL96-GPL97 | Loi_GPL570 | Loi_GPL96-GPL97 | Pawitan_GPL96-GPL97 | Schmidt | Sotiriou | Wang | Zhang |

Subnetwork structure for each dataset

Desmedt IPC-NIBC-129 Ivshina_GPL96-GPL97 Loi_GPL570 Loi_GPL96-GPL97 Pawitan_GPL96-GPL97 Schmidt Sotiriou Wang Zhang

Desmedt

Score for each gene in subnetwork 51-5-real in each dataset

Gene Symbol	Links	Frequency	Frequency Rank	Subnetwork score rank	Global rank	Desmedt	IPC-NIBC-129	Ivshina_GPL96-GPL97	Loi_GPL570	Loi_GPL96-GPL97	Pawitan_GPL96-GPL97	Schmidt	Sotiriou	Wang	Zhang
pcna		39	3	8	3	0.096	0.202	0.109	0.180	0.118	0.256	0.151	0.059	0.162	0.123
ccnd1		97	2	8	2	0.127	-0.183	0.062	0.190	0.157	0.105	-0.107	0.174	0.106	0.144
sp1		31	5	16	8	0.054	0.186	0.147	0.242	0.125	0.202	0.284	0.227	0.194	0.091
pole		3	39	171	151	0.073	0.135	0.081	-0.205	0.081	0.139	0.145	0.105	0.068	-0.014
cdc2		99	1	1	1	0.073	0.247	0.206	0.172	0.247	0.282	0.226	0.221	0.067	0.297
hdac2		16	10	64	39	0.012	0.245	0.030	0.077	0.070	0.183	0.222	-0.058	0.086	0.133
acox1		1	90	180	186	-0.046	0.072	0.062	-0.053	0.100	0.010	0.194	0.140	-0.036	0.169
top2a		22	7	70	46	0.147	0.183	0.185	0.100	0.206	0.309	0.261	0.183	0.072	0.234
topbp1		1	90	180	186	0.173	0.189	0.113	-0.073	0.106	0.115	0.178	0.093	0.117	0.091

GO Enrichment output for subnetwork 51-5-real in each dataset

Desmedt file

Name	Accession Number	Link	P-val	Corrected P-val
nucleotide-excision repair. DNA gap filling	GO:0006297		2.843E-07	6.538E-04
G1/S transition of mitotic cell cycle	GO:0000082		6.178E-06	7.105E-03
positive regulation of viral genome replication	GO:0045070		6.861E-06	5.26E-03
regulation of retroviral genome replication	GO:0045091		6.861E-06	3.945E-03
positive regulation of cell cycle	GO:0045787		7.097E-06	3.264E-03
DNA topological change	GO:0006265		1.029E-05	3.943E-03
nucleotide-excision repair	GO:0006289		1.101E-05	3.618E-03
positive regulation of cyclin-dependent protein kinase activity	GO:0045737		1.439E-05	4.138E-03
chromosome segregation	GO:0007059		1.454E-05	3.717E-03
DNA synthesis during DNA repair	GO:0000731		1.918E-05	4.412E-03
DNA ligation	GO:0006266		2.465E-05	5.155E-03

IPC-NIBC-129 file

Name	Accession Number	Link	P-val	Corrected P-val
nucleotide-excision repair. DNA gap filling	GO:0006297		8.491E-08	2.074E-04
G1/S transition of mitotic cell cycle	GO:0000082		2.277E-06	2.781E-03
positive regulation of cell cycle	GO:0045787		2.593E-06	2.111E-03
positive regulation of viral genome replication	GO:0045070		3.005E-06	1.835E-03
meiotic chromosome segregation	GO:0045132		3.005E-06	1.468E-03
nucleotide-excision repair	GO:0006289		4.372E-06	1.78E-03
regulation of retroviral genome replication	GO:0045091		4.506E-06	1.573E-03
establishment of spindle localization	GO:0051293		4.506E-06	1.376E-03
chromosome segregation	GO:0007059		7.132E-06	1.936E-03
positive regulation of cyclin-dependent protein kinase activity	GO:0045737		8.405E-06	2.053E-03
DNA topological change	GO:0006265		8.405E-06	1.867E-03

Ivshina_GPL96-GPL97 file

Name	Accession Number	Link	P-val	Corrected P-val
nucleotide-excision repair. DNA gap filling	GO:0006297		8.327E-08	2.003E-04
G1/S transition of mitotic cell cycle	GO:0000082		2.234E-06	2.687E-03
positive regulation of cell cycle	GO:0045787		2.543E-06	2.04E-03
positive regulation of viral genome replication	GO:0045070		2.996E-06	1.802E-03
regulation of retroviral genome replication	GO:0045091		2.996E-06	1.442E-03
meiotic chromosome segregation	GO:0045132		2.996E-06	1.201E-03
nucleotide-excision repair	GO:0006289		4.065E-06	1.397E-03
establishment of spindle localization	GO:0051293		4.492E-06	1.351E-03
chromosome segregation	GO:0007059		6.998E-06	1.871E-03
positive regulation of cyclin-dependent protein kinase activity	GO:0045737		8.38E-06	2.016E-03
DNA topological change	GO:0006265		8.38E-06	1.833E-03

Loi_GPL570 file

Name	Accession Number	Link	P-val	Corrected P-val
nucleotide-excision repair. DNA gap filling	GO:0006297		8.491E-08	2.074E-04
G1/S transition of mitotic cell cycle	GO:0000082		2.277E-06	2.781E-03
positive regulation of cell cycle	GO:0045787		2.593E-06	2.111E-03
positive regulation of viral genome replication	GO:0045070		3.005E-06	1.835E-03
meiotic chromosome segregation	GO:0045132		3.005E-06	1.468E-03
nucleotide-excision repair	GO:0006289		4.372E-06	1.78E-03
regulation of retroviral genome replication	GO:0045091		4.506E-06	1.573E-03
establishment of spindle localization	GO:0051293		4.506E-06	1.376E-03
chromosome segregation	GO:0007059		7.132E-06	1.936E-03
positive regulation of cyclin-dependent protein kinase activity	GO:0045737		8.405E-06	2.053E-03
DNA topological change	GO:0006265		8.405E-06	1.867E-03

Loi_GPL96-GPL97 file

Name	Accession Number	Link	P-val	Corrected P-val
nucleotide-excision repair. DNA gap filling	GO:0006297		8.327E-08	2.003E-04
G1/S transition of mitotic cell cycle	GO:0000082		2.234E-06	2.687E-03
positive regulation of cell cycle	GO:0045787		2.543E-06	2.04E-03
positive regulation of viral genome replication	GO:0045070		2.996E-06	1.802E-03
regulation of retroviral genome replication	GO:0045091		2.996E-06	1.442E-03
meiotic chromosome segregation	GO:0045132		2.996E-06	1.201E-03
nucleotide-excision repair	GO:0006289		4.065E-06	1.397E-03
establishment of spindle localization	GO:0051293		4.492E-06	1.351E-03
chromosome segregation	GO:0007059		6.998E-06	1.871E-03
positive regulation of cyclin-dependent protein kinase activity	GO:0045737		8.38E-06	2.016E-03
DNA topological change	GO:0006265		8.38E-06	1.833E-03

Pawitan_GPL96-GPL97 file

Name	Accession Number	Link	P-val	Corrected P-val
nucleotide-excision repair. DNA gap filling	GO:0006297		8.327E-08	2.003E-04
G1/S transition of mitotic cell cycle	GO:0000082		2.234E-06	2.687E-03
positive regulation of cell cycle	GO:0045787		2.543E-06	2.04E-03
positive regulation of viral genome replication	GO:0045070		2.996E-06	1.802E-03
regulation of retroviral genome replication	GO:0045091		2.996E-06	1.442E-03
meiotic chromosome segregation	GO:0045132		2.996E-06	1.201E-03
nucleotide-excision repair	GO:0006289		4.065E-06	1.397E-03
establishment of spindle localization	GO:0051293		4.492E-06	1.351E-03
chromosome segregation	GO:0007059		6.998E-06	1.871E-03
positive regulation of cyclin-dependent protein kinase activity	GO:0045737		8.38E-06	2.016E-03
DNA topological change	GO:0006265		8.38E-06	1.833E-03

Schmidt file

Name	Accession Number	Link	P-val	Corrected P-val
nucleotide-excision repair. DNA gap filling	GO:0006297		2.843E-07	6.538E-04
G1/S transition of mitotic cell cycle	GO:0000082		6.178E-06	7.105E-03
positive regulation of viral genome replication	GO:0045070		6.861E-06	5.26E-03
regulation of retroviral genome replication	GO:0045091		6.861E-06	3.945E-03
positive regulation of cell cycle	GO:0045787		7.097E-06	3.264E-03
DNA topological change	GO:0006265		1.029E-05	3.943E-03
nucleotide-excision repair	GO:0006289		1.101E-05	3.618E-03
positive regulation of cyclin-dependent protein kinase activity	GO:0045737		1.439E-05	4.138E-03
chromosome segregation	GO:0007059		1.454E-05	3.717E-03
DNA synthesis during DNA repair	GO:0000731		1.918E-05	4.412E-03
DNA ligation	GO:0006266		2.465E-05	5.155E-03

Sotiriou file

Name	Accession Number	Link	P-val	Corrected P-val
nucleotide-excision repair. DNA gap filling	GO:0006297		2.843E-07	6.538E-04
G1/S transition of mitotic cell cycle	GO:0000082		6.178E-06	7.105E-03
positive regulation of viral genome replication	GO:0045070		6.861E-06	5.26E-03
regulation of retroviral genome replication	GO:0045091		6.861E-06	3.945E-03
positive regulation of cell cycle	GO:0045787		7.097E-06	3.264E-03
DNA topological change	GO:0006265		1.029E-05	3.943E-03
nucleotide-excision repair	GO:0006289		1.101E-05	3.618E-03
positive regulation of cyclin-dependent protein kinase activity	GO:0045737		1.439E-05	4.138E-03
chromosome segregation	GO:0007059		1.454E-05	3.717E-03
DNA synthesis during DNA repair	GO:0000731		1.918E-05	4.412E-03
DNA ligation	GO:0006266		2.465E-05	5.155E-03

Wang file

Name	Accession Number	Link	P-val	Corrected P-val
nucleotide-excision repair. DNA gap filling	GO:0006297		2.843E-07	6.538E-04
G1/S transition of mitotic cell cycle	GO:0000082		6.178E-06	7.105E-03
positive regulation of viral genome replication	GO:0045070		6.861E-06	5.26E-03
regulation of retroviral genome replication	GO:0045091		6.861E-06	3.945E-03
positive regulation of cell cycle	GO:0045787		7.097E-06	3.264E-03
DNA topological change	GO:0006265		1.029E-05	3.943E-03
nucleotide-excision repair	GO:0006289		1.101E-05	3.618E-03
positive regulation of cyclin-dependent protein kinase activity	GO:0045737		1.439E-05	4.138E-03
chromosome segregation	GO:0007059		1.454E-05	3.717E-03
DNA synthesis during DNA repair	GO:0000731		1.918E-05	4.412E-03
DNA ligation	GO:0006266		2.465E-05	5.155E-03

Zhang file

Name	Accession Number	Link	P-val	Corrected P-val
nucleotide-excision repair. DNA gap filling	GO:0006297		2.843E-07	6.538E-04
G1/S transition of mitotic cell cycle	GO:0000082		6.178E-06	7.105E-03
positive regulation of viral genome replication	GO:0045070		6.861E-06	5.26E-03
regulation of retroviral genome replication	GO:0045091		6.861E-06	3.945E-03
positive regulation of cell cycle	GO:0045787		7.097E-06	3.264E-03
DNA topological change	GO:0006265		1.029E-05	3.943E-03
nucleotide-excision repair	GO:0006289		1.101E-05	3.618E-03
positive regulation of cyclin-dependent protein kinase activity	GO:0045737		1.439E-05	4.138E-03
chromosome segregation	GO:0007059		1.454E-05	3.717E-03
DNA synthesis during DNA repair	GO:0000731		1.918E-05	4.412E-03
DNA ligation	GO:0006266		2.465E-05	5.155E-03