Study run-b1

Study informations

127 subnetworks in total page | file

236 genes associated page | file

Enriched GO terms page

General informations

General Index page

Study Index page

Subnetwork 5000-5-real

score

Dataset	Score	P-val 1	P-val 2	P-val 3
Desmedt	0.1505	2.110e-02	8.933e-03	1.046e-01
IPC-NIBC-129	0.1697	1.250e-01	1.130e-01	5.095e-01
Ivshina_GPL96-GPL97	0.2110	5.792e-02	4.744e-02	4.789e-01
Loi_GPL570	0.1999	9.218e-02	1.163e-01	3.578e-01
Loi_GPL96-GPL97	0.2057	2.180e-02	1.387e-02	2.985e-01
Pawitan_GPL96-GPL97	0.3206	1.116e-01	6.267e-02	5.302e-01
Schmidt	0.2167	4.213e-02	4.426e-02	2.474e-01
Sotiriou	0.2371	5.798e-02	1.921e-02	4.027e-01
Wang	0.1824	6.461e-02	4.858e-02	2.188e-01
Zhang	0.2447	7.608e-03	3.751e-03	3.736e-02

Expression data for subnetwork 5000-5-real in each dataset

Desmedt | IPC-NIBC-129 | Ivshina_GPL96-GPL97 | Loi_GPL570 | Loi_GPL96-GPL97 | Pawitan_GPL96-GPL97 | Schmidt | Sotiriou | Wang | Zhang |

Subnetwork structure for each dataset

Desmedt IPC-NIBC-129 Ivshina_GPL96-GPL97 Loi_GPL570 Loi_GPL96-GPL97 Pawitan_GPL96-GPL97 Schmidt Sotiriou Wang Zhang

Desmedt

Score for each gene in subnetwork 5000-5-real in each dataset

Gene Symbol	Links	Frequency	Frequency Rank	Subnetwork score rank	Global rank	Desmedt	IPC-NIBC-129	Ivshina_GPL96-GPL97	Loi_GPL570	Loi_GPL96-GPL97	Pawitan_GPL96-GPL97	Schmidt	Sotiriou	Wang	Zhang
pcna		39	3	8	3	0.096	0.202	0.109	0.180	0.118	0.256	0.151	0.059	0.162	0.123
fen1		7	15	8	6	0.045	0.194	0.169	0.196	0.136	0.332	0.221	0.144	0.106	0.056
cdc2		99	1	1	1	0.073	0.247	0.206	0.172	0.247	0.282	0.226	0.221	0.067	0.297
top2a		22	7	70	46	0.147	0.183	0.185	0.100	0.206	0.309	0.261	0.183	0.072	0.234
orc4l		1	90	221	226	-0.022	0.061	0.080	0.008	0.100	0.019	0.116	0.095	0.066	0.037
ccnd1		97	2	8	2	0.127	-0.183	0.062	0.190	0.157	0.105	-0.107	0.174	0.106	0.144

GO Enrichment output for subnetwork 5000-5-real in each dataset

Desmedt file

Name	Accession Number	Link	P-val	Corrected P-val
phosphoinositide-mediated signaling	GO:0048015		1.206E-07	2.774E-04
response to UV	GO:0009411		3.689E-06	4.243E-03
positive regulation of viral genome replication	GO:0045070		4.314E-06	3.308E-03
regulation of retroviral genome replication	GO:0045091		4.314E-06	2.481E-03
DNA topological change	GO:0006265		6.469E-06	2.976E-03
positive regulation of cyclin-dependent protein kinase activity	GO:0045737		9.053E-06	3.47E-03
DNA ligation	GO:0006266		1.551E-05	5.096E-03
UV protection	GO:0009650		1.938E-05	5.571E-03
positive regulation of viral reproduction	GO:0048524		1.938E-05	4.952E-03
response to light stimulus	GO:0009416		3.406E-05	7.834E-03
cellular response to unfolded protein	GO:0034620		5.156E-05	0.01077987

IPC-NIBC-129 file

Name	Accession Number	Link	P-val	Corrected P-val
phosphoinositide-mediated signaling	GO:0048015		1.288E-08	3.147E-05
response to UV	GO:0009411		9.917E-07	1.211E-03
positive regulation of viral genome replication	GO:0045070		1.234E-06	1.005E-03
regulation of retroviral genome replication	GO:0045091		1.851E-06	1.13E-03
positive regulation of cyclin-dependent protein kinase activity	GO:0045737		3.453E-06	1.687E-03
DNA topological change	GO:0006265		3.453E-06	1.406E-03
DNA ligation	GO:0006266		5.548E-06	1.936E-03
positive regulation of viral reproduction	GO:0048524		5.548E-06	1.694E-03
UV protection	GO:0009650		6.779E-06	1.84E-03
nucleotide-excision repair. DNA gap filling	GO:0006297		1.478E-05	3.61E-03
DNA replication initiation	GO:0006270		1.478E-05	3.281E-03

Ivshina_GPL96-GPL97 file

Name	Accession Number	Link	P-val	Corrected P-val
phosphoinositide-mediated signaling	GO:0048015		2.493E-08	5.998E-05
response to UV	GO:0009411		1.453E-06	1.749E-03
positive regulation of viral genome replication	GO:0045070		1.719E-06	1.378E-03
regulation of retroviral genome replication	GO:0045091		1.719E-06	1.034E-03
positive regulation of cyclin-dependent protein kinase activity	GO:0045737		4.809E-06	2.314E-03
DNA topological change	GO:0006265		4.809E-06	1.928E-03
DNA ligation	GO:0006266		7.725E-06	2.655E-03
positive regulation of viral reproduction	GO:0048524		7.725E-06	2.323E-03
UV protection	GO:0009650		9.439E-06	2.523E-03
nucleotide-excision repair. DNA gap filling	GO:0006297		2.057E-05	4.949E-03
DNA replication initiation	GO:0006270		2.057E-05	4.499E-03

Loi_GPL570 file

Name	Accession Number	Link	P-val	Corrected P-val
phosphoinositide-mediated signaling	GO:0048015		1.288E-08	3.147E-05
response to UV	GO:0009411		9.917E-07	1.211E-03
positive regulation of viral genome replication	GO:0045070		1.234E-06	1.005E-03
regulation of retroviral genome replication	GO:0045091		1.851E-06	1.13E-03
positive regulation of cyclin-dependent protein kinase activity	GO:0045737		3.453E-06	1.687E-03
DNA topological change	GO:0006265		3.453E-06	1.406E-03
DNA ligation	GO:0006266		5.548E-06	1.936E-03
positive regulation of viral reproduction	GO:0048524		5.548E-06	1.694E-03
UV protection	GO:0009650		6.779E-06	1.84E-03
nucleotide-excision repair. DNA gap filling	GO:0006297		1.478E-05	3.61E-03
DNA replication initiation	GO:0006270		1.478E-05	3.281E-03

Loi_GPL96-GPL97 file

Name	Accession Number	Link	P-val	Corrected P-val
phosphoinositide-mediated signaling	GO:0048015		2.493E-08	5.998E-05
response to UV	GO:0009411		1.453E-06	1.749E-03
positive regulation of viral genome replication	GO:0045070		1.719E-06	1.378E-03
regulation of retroviral genome replication	GO:0045091		1.719E-06	1.034E-03
positive regulation of cyclin-dependent protein kinase activity	GO:0045737		4.809E-06	2.314E-03
DNA topological change	GO:0006265		4.809E-06	1.928E-03
DNA ligation	GO:0006266		7.725E-06	2.655E-03
positive regulation of viral reproduction	GO:0048524		7.725E-06	2.323E-03
UV protection	GO:0009650		9.439E-06	2.523E-03
nucleotide-excision repair. DNA gap filling	GO:0006297		2.057E-05	4.949E-03
DNA replication initiation	GO:0006270		2.057E-05	4.499E-03

Pawitan_GPL96-GPL97 file

Name	Accession Number	Link	P-val	Corrected P-val
phosphoinositide-mediated signaling	GO:0048015		2.493E-08	5.998E-05
response to UV	GO:0009411		1.453E-06	1.749E-03
positive regulation of viral genome replication	GO:0045070		1.719E-06	1.378E-03
regulation of retroviral genome replication	GO:0045091		1.719E-06	1.034E-03
positive regulation of cyclin-dependent protein kinase activity	GO:0045737		4.809E-06	2.314E-03
DNA topological change	GO:0006265		4.809E-06	1.928E-03
DNA ligation	GO:0006266		7.725E-06	2.655E-03
positive regulation of viral reproduction	GO:0048524		7.725E-06	2.323E-03
UV protection	GO:0009650		9.439E-06	2.523E-03
nucleotide-excision repair. DNA gap filling	GO:0006297		2.057E-05	4.949E-03
DNA replication initiation	GO:0006270		2.057E-05	4.499E-03

Schmidt file

Name	Accession Number	Link	P-val	Corrected P-val
phosphoinositide-mediated signaling	GO:0048015		1.206E-07	2.774E-04
response to UV	GO:0009411		3.689E-06	4.243E-03
positive regulation of viral genome replication	GO:0045070		4.314E-06	3.308E-03
regulation of retroviral genome replication	GO:0045091		4.314E-06	2.481E-03
DNA topological change	GO:0006265		6.469E-06	2.976E-03
positive regulation of cyclin-dependent protein kinase activity	GO:0045737		9.053E-06	3.47E-03
DNA ligation	GO:0006266		1.551E-05	5.096E-03
UV protection	GO:0009650		1.938E-05	5.571E-03
positive regulation of viral reproduction	GO:0048524		1.938E-05	4.952E-03
response to light stimulus	GO:0009416		3.406E-05	7.834E-03
cellular response to unfolded protein	GO:0034620		5.156E-05	0.01077987

Sotiriou file

Name	Accession Number	Link	P-val	Corrected P-val
phosphoinositide-mediated signaling	GO:0048015		1.206E-07	2.774E-04
response to UV	GO:0009411		3.689E-06	4.243E-03
positive regulation of viral genome replication	GO:0045070		4.314E-06	3.308E-03
regulation of retroviral genome replication	GO:0045091		4.314E-06	2.481E-03
DNA topological change	GO:0006265		6.469E-06	2.976E-03
positive regulation of cyclin-dependent protein kinase activity	GO:0045737		9.053E-06	3.47E-03
DNA ligation	GO:0006266		1.551E-05	5.096E-03
UV protection	GO:0009650		1.938E-05	5.571E-03
positive regulation of viral reproduction	GO:0048524		1.938E-05	4.952E-03
response to light stimulus	GO:0009416		3.406E-05	7.834E-03
cellular response to unfolded protein	GO:0034620		5.156E-05	0.01077987

Wang file

Name	Accession Number	Link	P-val	Corrected P-val
phosphoinositide-mediated signaling	GO:0048015		1.206E-07	2.774E-04
response to UV	GO:0009411		3.689E-06	4.243E-03
positive regulation of viral genome replication	GO:0045070		4.314E-06	3.308E-03
regulation of retroviral genome replication	GO:0045091		4.314E-06	2.481E-03
DNA topological change	GO:0006265		6.469E-06	2.976E-03
positive regulation of cyclin-dependent protein kinase activity	GO:0045737		9.053E-06	3.47E-03
DNA ligation	GO:0006266		1.551E-05	5.096E-03
UV protection	GO:0009650		1.938E-05	5.571E-03
positive regulation of viral reproduction	GO:0048524		1.938E-05	4.952E-03
response to light stimulus	GO:0009416		3.406E-05	7.834E-03
cellular response to unfolded protein	GO:0034620		5.156E-05	0.01077987

Zhang file

Name	Accession Number	Link	P-val	Corrected P-val
phosphoinositide-mediated signaling	GO:0048015		1.206E-07	2.774E-04
response to UV	GO:0009411		3.689E-06	4.243E-03
positive regulation of viral genome replication	GO:0045070		4.314E-06	3.308E-03
regulation of retroviral genome replication	GO:0045091		4.314E-06	2.481E-03
DNA topological change	GO:0006265		6.469E-06	2.976E-03
positive regulation of cyclin-dependent protein kinase activity	GO:0045737		9.053E-06	3.47E-03
DNA ligation	GO:0006266		1.551E-05	5.096E-03
UV protection	GO:0009650		1.938E-05	5.571E-03
positive regulation of viral reproduction	GO:0048524		1.938E-05	4.952E-03
response to light stimulus	GO:0009416		3.406E-05	7.834E-03
cellular response to unfolded protein	GO:0034620		5.156E-05	0.01077987