Study run-b1

Study informations

127 subnetworks in total page | file

236 genes associated page | file

Enriched GO terms page

General informations

General Index page

Study Index page

Subnetwork 4591-5-real

score

Dataset	Score	P-val 1	P-val 2	P-val 3
Desmedt	0.1566	3.122e-02	1.517e-02	1.411e-01
IPC-NIBC-129	0.2341	1.122e-01	1.001e-01	4.713e-01
Ivshina_GPL96-GPL97	0.1921	1.634e-02	1.084e-02	1.901e-01
Loi_GPL570	0.2086	1.021e-01	1.278e-01	3.849e-01
Loi_GPL96-GPL97	0.1935	1.728e-02	1.020e-02	2.390e-01
Pawitan_GPL96-GPL97	0.3021	8.718e-02	4.565e-02	4.546e-01
Schmidt	0.2089	1.740e-02	1.865e-02	1.190e-01
Sotiriou	0.2931	7.071e-02	2.551e-02	4.598e-01
Wang	0.1706	7.905e-02	6.267e-02	2.541e-01
Zhang	0.2675	1.039e-02	5.315e-03	4.823e-02

Expression data for subnetwork 4591-5-real in each dataset

Desmedt | IPC-NIBC-129 | Ivshina_GPL96-GPL97 | Loi_GPL570 | Loi_GPL96-GPL97 | Pawitan_GPL96-GPL97 | Schmidt | Sotiriou | Wang | Zhang |

Subnetwork structure for each dataset

Desmedt IPC-NIBC-129 Ivshina_GPL96-GPL97 Loi_GPL570 Loi_GPL96-GPL97 Pawitan_GPL96-GPL97 Schmidt Sotiriou Wang Zhang

Desmedt

Score for each gene in subnetwork 4591-5-real in each dataset

Gene Symbol	Links	Frequency	Frequency Rank	Subnetwork score rank	Global rank	Desmedt	IPC-NIBC-129	Ivshina_GPL96-GPL97	Loi_GPL570	Loi_GPL96-GPL97	Pawitan_GPL96-GPL97	Schmidt	Sotiriou	Wang	Zhang
pbk		1	90	167	176	0.081	0.245	0.138	0.065	0.167	0.214	0.183	0.193	0.150	0.169
cdc2		99	1	1	1	0.073	0.247	0.206	0.172	0.247	0.282	0.226	0.221	0.067	0.297
stmn2		19	8	32	18	0.057	0.106	0.005	0.052	0.110	0.006	0.034	0.103	0.075	0.113
trim37		1	90	167	176	0.019	0.200	0.060	0.075	0.165	0.092	0.015	0.122	0.184	-0.020
troap		4	27	167	139	0.078	0.179	0.137	0.149	0.119	0.144	0.284	0.117	0.050	0.242
bysl		4	27	167	139	0.097	0.204	0.042	0.257	0.107	0.316	0.233	0.106	-0.015	-0.010
ccnd1		97	2	8	2	0.127	-0.183	0.062	0.190	0.157	0.105	-0.107	0.174	0.106	0.144

GO Enrichment output for subnetwork 4591-5-real in each dataset

Desmedt file

Name	Accession Number	Link	P-val	Corrected P-val
positive regulation of cyclin-dependent protein kinase activity	GO:0045737		6.175E-06	0.01420266
cellular response to unfolded protein	GO:0034620		3.519E-05	0.04046772
response to endoplasmic reticulum stress	GO:0034976		6.149E-05	0.04714036
ER-nuclear signaling pathway	GO:0006984		7.403E-05	0.04256869
fat cell differentiation	GO:0045444		8.074E-05	0.03713952
response to calcium ion	GO:0051592		2.271E-04	0.08704019
G1/S transition of mitotic cell cycle	GO:0000082		2.626E-04	0.0862916
positive regulation of cell cycle	GO:0045787		2.878E-04	0.08272921
response to UV	GO:0009411		3.007E-04	0.07685621
regulation of cyclin-dependent protein kinase activity	GO:0000079		3.699E-04	0.08508021
anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process	GO:0031145		5.293E-04	0.11067541

IPC-NIBC-129 file

Name	Accession Number	Link	P-val	Corrected P-val
positive regulation of cyclin-dependent protein kinase activity	GO:0045737		2.922E-06	7.139E-03
cellular response to unfolded protein	GO:0034620		1.979E-05	0.02416764
response to endoplasmic reticulum stress	GO:0034976		3.381E-05	0.02752859
fat cell differentiation	GO:0045444		3.93E-05	0.02400439
ER-nuclear signaling pathway	GO:0006984		4.221E-05	0.02062213
G1/S transition of mitotic cell cycle	GO:0000082		1.073E-04	0.04366985
positive regulation of cell cycle	GO:0045787		1.168E-04	0.04077939
response to calcium ion	GO:0051592		1.218E-04	0.03719337
response to UV	GO:0009411		1.536E-04	0.0417007
regulation of cyclin-dependent protein kinase activity	GO:0000079		1.65E-04	0.04032082
anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process	GO:0031145		2.351E-04	0.05221094

Ivshina_GPL96-GPL97 file

Name	Accession Number	Link	P-val	Corrected P-val
positive regulation of cyclin-dependent protein kinase activity	GO:0045737		2.775E-06	6.678E-03
cellular response to unfolded protein	GO:0034620		1.692E-05	0.02035109
response to endoplasmic reticulum stress	GO:0034976		2.965E-05	0.02377716
fat cell differentiation	GO:0045444		3.468E-05	0.02085707
ER-nuclear signaling pathway	GO:0006984		3.734E-05	0.01796598
G1/S transition of mitotic cell cycle	GO:0000082		1.019E-04	0.04086331
response to calcium ion	GO:0051592		1.064E-04	0.03657591
positive regulation of cell cycle	GO:0045787		1.11E-04	0.03338948
response to UV	GO:0009411		1.355E-04	0.03622536
regulation of cyclin-dependent protein kinase activity	GO:0000079		1.568E-04	0.03773385
anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process	GO:0031145		2.234E-04	0.0488667

Loi_GPL570 file

Name	Accession Number	Link	P-val	Corrected P-val
positive regulation of cyclin-dependent protein kinase activity	GO:0045737		2.922E-06	7.139E-03
cellular response to unfolded protein	GO:0034620		1.979E-05	0.02416764
response to endoplasmic reticulum stress	GO:0034976		3.381E-05	0.02752859
fat cell differentiation	GO:0045444		3.93E-05	0.02400439
ER-nuclear signaling pathway	GO:0006984		4.221E-05	0.02062213
G1/S transition of mitotic cell cycle	GO:0000082		1.073E-04	0.04366985
positive regulation of cell cycle	GO:0045787		1.168E-04	0.04077939
response to calcium ion	GO:0051592		1.218E-04	0.03719337
response to UV	GO:0009411		1.536E-04	0.0417007
regulation of cyclin-dependent protein kinase activity	GO:0000079		1.65E-04	0.04032082
anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process	GO:0031145		2.351E-04	0.05221094

Loi_GPL96-GPL97 file

Name	Accession Number	Link	P-val	Corrected P-val
positive regulation of cyclin-dependent protein kinase activity	GO:0045737		2.775E-06	6.678E-03
cellular response to unfolded protein	GO:0034620		1.692E-05	0.02035109
response to endoplasmic reticulum stress	GO:0034976		2.965E-05	0.02377716
fat cell differentiation	GO:0045444		3.468E-05	0.02085707
ER-nuclear signaling pathway	GO:0006984		3.734E-05	0.01796598
G1/S transition of mitotic cell cycle	GO:0000082		1.019E-04	0.04086331
response to calcium ion	GO:0051592		1.064E-04	0.03657591
positive regulation of cell cycle	GO:0045787		1.11E-04	0.03338948
response to UV	GO:0009411		1.355E-04	0.03622536
regulation of cyclin-dependent protein kinase activity	GO:0000079		1.568E-04	0.03773385
anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process	GO:0031145		2.234E-04	0.0488667

Pawitan_GPL96-GPL97 file

Name	Accession Number	Link	P-val	Corrected P-val
positive regulation of cyclin-dependent protein kinase activity	GO:0045737		2.775E-06	6.678E-03
cellular response to unfolded protein	GO:0034620		1.692E-05	0.02035109
response to endoplasmic reticulum stress	GO:0034976		2.965E-05	0.02377716
fat cell differentiation	GO:0045444		3.468E-05	0.02085707
ER-nuclear signaling pathway	GO:0006984		3.734E-05	0.01796598
G1/S transition of mitotic cell cycle	GO:0000082		1.019E-04	0.04086331
response to calcium ion	GO:0051592		1.064E-04	0.03657591
positive regulation of cell cycle	GO:0045787		1.11E-04	0.03338948
response to UV	GO:0009411		1.355E-04	0.03622536
regulation of cyclin-dependent protein kinase activity	GO:0000079		1.568E-04	0.03773385
anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process	GO:0031145		2.234E-04	0.0488667

Schmidt file

Name	Accession Number	Link	P-val	Corrected P-val
positive regulation of cyclin-dependent protein kinase activity	GO:0045737		6.175E-06	0.01420266
cellular response to unfolded protein	GO:0034620		3.519E-05	0.04046772
response to endoplasmic reticulum stress	GO:0034976		6.149E-05	0.04714036
ER-nuclear signaling pathway	GO:0006984		7.403E-05	0.04256869
fat cell differentiation	GO:0045444		8.074E-05	0.03713952
response to calcium ion	GO:0051592		2.271E-04	0.08704019
G1/S transition of mitotic cell cycle	GO:0000082		2.626E-04	0.0862916
positive regulation of cell cycle	GO:0045787		2.878E-04	0.08272921
response to UV	GO:0009411		3.007E-04	0.07685621
regulation of cyclin-dependent protein kinase activity	GO:0000079		3.699E-04	0.08508021
anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process	GO:0031145		5.293E-04	0.11067541

Sotiriou file

Name	Accession Number	Link	P-val	Corrected P-val
positive regulation of cyclin-dependent protein kinase activity	GO:0045737		6.175E-06	0.01420266
cellular response to unfolded protein	GO:0034620		3.519E-05	0.04046772
response to endoplasmic reticulum stress	GO:0034976		6.149E-05	0.04714036
ER-nuclear signaling pathway	GO:0006984		7.403E-05	0.04256869
fat cell differentiation	GO:0045444		8.074E-05	0.03713952
response to calcium ion	GO:0051592		2.271E-04	0.08704019
G1/S transition of mitotic cell cycle	GO:0000082		2.626E-04	0.0862916
positive regulation of cell cycle	GO:0045787		2.878E-04	0.08272921
response to UV	GO:0009411		3.007E-04	0.07685621
regulation of cyclin-dependent protein kinase activity	GO:0000079		3.699E-04	0.08508021
anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process	GO:0031145		5.293E-04	0.11067541

Wang file

Name	Accession Number	Link	P-val	Corrected P-val
positive regulation of cyclin-dependent protein kinase activity	GO:0045737		6.175E-06	0.01420266
cellular response to unfolded protein	GO:0034620		3.519E-05	0.04046772
response to endoplasmic reticulum stress	GO:0034976		6.149E-05	0.04714036
ER-nuclear signaling pathway	GO:0006984		7.403E-05	0.04256869
fat cell differentiation	GO:0045444		8.074E-05	0.03713952
response to calcium ion	GO:0051592		2.271E-04	0.08704019
G1/S transition of mitotic cell cycle	GO:0000082		2.626E-04	0.0862916
positive regulation of cell cycle	GO:0045787		2.878E-04	0.08272921
response to UV	GO:0009411		3.007E-04	0.07685621
regulation of cyclin-dependent protein kinase activity	GO:0000079		3.699E-04	0.08508021
anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process	GO:0031145		5.293E-04	0.11067541

Zhang file

Name	Accession Number	Link	P-val	Corrected P-val
positive regulation of cyclin-dependent protein kinase activity	GO:0045737		6.175E-06	0.01420266
cellular response to unfolded protein	GO:0034620		3.519E-05	0.04046772
response to endoplasmic reticulum stress	GO:0034976		6.149E-05	0.04714036
ER-nuclear signaling pathway	GO:0006984		7.403E-05	0.04256869
fat cell differentiation	GO:0045444		8.074E-05	0.03713952
response to calcium ion	GO:0051592		2.271E-04	0.08704019
G1/S transition of mitotic cell cycle	GO:0000082		2.626E-04	0.0862916
positive regulation of cell cycle	GO:0045787		2.878E-04	0.08272921
response to UV	GO:0009411		3.007E-04	0.07685621
regulation of cyclin-dependent protein kinase activity	GO:0000079		3.699E-04	0.08508021
anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process	GO:0031145		5.293E-04	0.11067541