Study run-b1

Study informations

127 subnetworks in total page | file

236 genes associated page | file

Enriched GO terms page

General informations

General Index page

Study Index page

Subnetwork 4176-5-real

score

Dataset	Score	P-val 1	P-val 2	P-val 3
Desmedt	0.2020	1.546e-02	5.857e-03	8.217e-02
IPC-NIBC-129	0.1762	1.217e-01	1.097e-01	4.999e-01
Ivshina_GPL96-GPL97	0.2260	5.105e-02	4.099e-02	4.424e-01
Loi_GPL570	0.2021	9.388e-02	1.183e-01	3.625e-01
Loi_GPL96-GPL97	0.1997	2.850e-03	8.970e-04	2.645e-02
Pawitan_GPL96-GPL97	0.3413	1.432e-01	8.620e-02	6.108e-01
Schmidt	0.2153	2.769e-02	2.936e-02	1.766e-01
Sotiriou	0.2638	6.388e-02	2.206e-02	4.301e-01
Wang	0.1607	9.363e-02	7.752e-02	2.875e-01
Zhang	0.2214	5.362e-03	2.538e-03	2.797e-02

Expression data for subnetwork 4176-5-real in each dataset

Desmedt | IPC-NIBC-129 | Ivshina_GPL96-GPL97 | Loi_GPL570 | Loi_GPL96-GPL97 | Pawitan_GPL96-GPL97 | Schmidt | Sotiriou | Wang | Zhang |

Subnetwork structure for each dataset

Desmedt IPC-NIBC-129 Ivshina_GPL96-GPL97 Loi_GPL570 Loi_GPL96-GPL97 Pawitan_GPL96-GPL97 Schmidt Sotiriou Wang Zhang

Desmedt

Score for each gene in subnetwork 4176-5-real in each dataset

Gene Symbol	Links	Frequency	Frequency Rank	Subnetwork score rank	Global rank	Desmedt	IPC-NIBC-129	Ivshina_GPL96-GPL97	Loi_GPL570	Loi_GPL96-GPL97	Pawitan_GPL96-GPL97	Schmidt	Sotiriou	Wang	Zhang
mcm7		1	90	188	191	0.125	0.166	0.098	0.114	0.103	0.209	0.205	0.117	0.084	0.040
ccnb2		4	27	188	164	0.164	0.176	0.204	0.123	0.172	0.366	0.240	0.169	0.144	0.211
cdc2		99	1	1	1	0.073	0.247	0.206	0.172	0.247	0.282	0.226	0.221	0.067	0.297
mcm2		4	27	188	164	0.151	0.254	0.188	0.128	0.154	0.267	0.224	0.200	0.101	0.012
ccnd1		97	2	8	2	0.127	-0.183	0.062	0.190	0.157	0.105	-0.107	0.174	0.106	0.144

GO Enrichment output for subnetwork 4176-5-real in each dataset

Desmedt file

Name	Accession Number	Link	P-val	Corrected P-val
DNA replication initiation	GO:0006270		5.266E-08	1.211E-04
DNA-dependent DNA replication	GO:0006261		1.152E-06	1.325E-03
positive regulation of cyclin-dependent protein kinase activity	GO:0045737		4.941E-06	3.788E-03
thymus development	GO:0048538		8.466E-06	4.868E-03
T cell homeostasis	GO:0043029		1.293E-05	5.946E-03
lymphocyte homeostasis	GO:0002260		1.832E-05	7.024E-03
DNA unwinding during replication	GO:0006268		2.137E-05	7.022E-03
cellular response to unfolded protein	GO:0034620		2.817E-05	8.098E-03
DNA duplex unwinding	GO:0032508		3.191E-05	8.156E-03
response to endoplasmic reticulum stress	GO:0034976		4.923E-05	0.01132189
leukocyte homeostasis	GO:0001776		5.413E-05	0.01131886

IPC-NIBC-129 file

Name	Accession Number	Link	P-val	Corrected P-val
DNA replication initiation	GO:0006270		8.962E-09	2.19E-05
DNA-dependent DNA replication	GO:0006261		3.518E-07	4.297E-04
positive regulation of cyclin-dependent protein kinase activity	GO:0045737		1.993E-06	1.623E-03
thymus development	GO:0048538		3.913E-06	2.39E-03
T cell homeostasis	GO:0043029		4.695E-06	2.294E-03
lymphocyte homeostasis	GO:0002260		7.466E-06	3.04E-03
DNA unwinding during replication	GO:0006268		9.667E-06	3.374E-03
DNA duplex unwinding	GO:0032508		1.35E-05	4.122E-03
cellular response to unfolded protein	GO:0034620		1.35E-05	3.664E-03
leukocyte homeostasis	GO:0001776		2.13E-05	5.203E-03
response to endoplasmic reticulum stress	GO:0034976		2.307E-05	5.124E-03

Ivshina_GPL96-GPL97 file

Name	Accession Number	Link	P-val	Corrected P-val
DNA replication initiation	GO:0006270		1.031E-08	2.481E-05
DNA-dependent DNA replication	GO:0006261		3.376E-07	4.062E-04
positive regulation of cyclin-dependent protein kinase activity	GO:0045737		2.221E-06	1.781E-03
thymus development	GO:0048538		4.36E-06	2.623E-03
T cell homeostasis	GO:0043029		5.231E-06	2.517E-03
lymphocyte homeostasis	GO:0002260		8.318E-06	3.336E-03
DNA unwinding during replication	GO:0006268		1.077E-05	3.702E-03
cellular response to unfolded protein	GO:0034620		1.354E-05	4.072E-03
DNA duplex unwinding	GO:0032508		1.504E-05	4.021E-03
leukocyte homeostasis	GO:0001776		2.183E-05	5.253E-03
response to endoplasmic reticulum stress	GO:0034976		2.373E-05	5.19E-03

Loi_GPL570 file

Name	Accession Number	Link	P-val	Corrected P-val
DNA replication initiation	GO:0006270		8.962E-09	2.19E-05
DNA-dependent DNA replication	GO:0006261		3.518E-07	4.297E-04
positive regulation of cyclin-dependent protein kinase activity	GO:0045737		1.993E-06	1.623E-03
thymus development	GO:0048538		3.913E-06	2.39E-03
T cell homeostasis	GO:0043029		4.695E-06	2.294E-03
lymphocyte homeostasis	GO:0002260		7.466E-06	3.04E-03
DNA unwinding during replication	GO:0006268		9.667E-06	3.374E-03
DNA duplex unwinding	GO:0032508		1.35E-05	4.122E-03
cellular response to unfolded protein	GO:0034620		1.35E-05	3.664E-03
leukocyte homeostasis	GO:0001776		2.13E-05	5.203E-03
response to endoplasmic reticulum stress	GO:0034976		2.307E-05	5.124E-03

Loi_GPL96-GPL97 file

Name	Accession Number	Link	P-val	Corrected P-val
DNA replication initiation	GO:0006270		1.031E-08	2.481E-05
DNA-dependent DNA replication	GO:0006261		3.376E-07	4.062E-04
positive regulation of cyclin-dependent protein kinase activity	GO:0045737		2.221E-06	1.781E-03
thymus development	GO:0048538		4.36E-06	2.623E-03
T cell homeostasis	GO:0043029		5.231E-06	2.517E-03
lymphocyte homeostasis	GO:0002260		8.318E-06	3.336E-03
DNA unwinding during replication	GO:0006268		1.077E-05	3.702E-03
cellular response to unfolded protein	GO:0034620		1.354E-05	4.072E-03
DNA duplex unwinding	GO:0032508		1.504E-05	4.021E-03
leukocyte homeostasis	GO:0001776		2.183E-05	5.253E-03
response to endoplasmic reticulum stress	GO:0034976		2.373E-05	5.19E-03

Pawitan_GPL96-GPL97 file

Name	Accession Number	Link	P-val	Corrected P-val
DNA replication initiation	GO:0006270		1.031E-08	2.481E-05
DNA-dependent DNA replication	GO:0006261		3.376E-07	4.062E-04
positive regulation of cyclin-dependent protein kinase activity	GO:0045737		2.221E-06	1.781E-03
thymus development	GO:0048538		4.36E-06	2.623E-03
T cell homeostasis	GO:0043029		5.231E-06	2.517E-03
lymphocyte homeostasis	GO:0002260		8.318E-06	3.336E-03
DNA unwinding during replication	GO:0006268		1.077E-05	3.702E-03
cellular response to unfolded protein	GO:0034620		1.354E-05	4.072E-03
DNA duplex unwinding	GO:0032508		1.504E-05	4.021E-03
leukocyte homeostasis	GO:0001776		2.183E-05	5.253E-03
response to endoplasmic reticulum stress	GO:0034976		2.373E-05	5.19E-03

Schmidt file

Name	Accession Number	Link	P-val	Corrected P-val
DNA replication initiation	GO:0006270		5.266E-08	1.211E-04
DNA-dependent DNA replication	GO:0006261		1.152E-06	1.325E-03
positive regulation of cyclin-dependent protein kinase activity	GO:0045737		4.941E-06	3.788E-03
thymus development	GO:0048538		8.466E-06	4.868E-03
T cell homeostasis	GO:0043029		1.293E-05	5.946E-03
lymphocyte homeostasis	GO:0002260		1.832E-05	7.024E-03
DNA unwinding during replication	GO:0006268		2.137E-05	7.022E-03
cellular response to unfolded protein	GO:0034620		2.817E-05	8.098E-03
DNA duplex unwinding	GO:0032508		3.191E-05	8.156E-03
response to endoplasmic reticulum stress	GO:0034976		4.923E-05	0.01132189
leukocyte homeostasis	GO:0001776		5.413E-05	0.01131886

Sotiriou file

Name	Accession Number	Link	P-val	Corrected P-val
DNA replication initiation	GO:0006270		5.266E-08	1.211E-04
DNA-dependent DNA replication	GO:0006261		1.152E-06	1.325E-03
positive regulation of cyclin-dependent protein kinase activity	GO:0045737		4.941E-06	3.788E-03
thymus development	GO:0048538		8.466E-06	4.868E-03
T cell homeostasis	GO:0043029		1.293E-05	5.946E-03
lymphocyte homeostasis	GO:0002260		1.832E-05	7.024E-03
DNA unwinding during replication	GO:0006268		2.137E-05	7.022E-03
cellular response to unfolded protein	GO:0034620		2.817E-05	8.098E-03
DNA duplex unwinding	GO:0032508		3.191E-05	8.156E-03
response to endoplasmic reticulum stress	GO:0034976		4.923E-05	0.01132189
leukocyte homeostasis	GO:0001776		5.413E-05	0.01131886

Wang file

Name	Accession Number	Link	P-val	Corrected P-val
DNA replication initiation	GO:0006270		5.266E-08	1.211E-04
DNA-dependent DNA replication	GO:0006261		1.152E-06	1.325E-03
positive regulation of cyclin-dependent protein kinase activity	GO:0045737		4.941E-06	3.788E-03
thymus development	GO:0048538		8.466E-06	4.868E-03
T cell homeostasis	GO:0043029		1.293E-05	5.946E-03
lymphocyte homeostasis	GO:0002260		1.832E-05	7.024E-03
DNA unwinding during replication	GO:0006268		2.137E-05	7.022E-03
cellular response to unfolded protein	GO:0034620		2.817E-05	8.098E-03
DNA duplex unwinding	GO:0032508		3.191E-05	8.156E-03
response to endoplasmic reticulum stress	GO:0034976		4.923E-05	0.01132189
leukocyte homeostasis	GO:0001776		5.413E-05	0.01131886

Zhang file

Name	Accession Number	Link	P-val	Corrected P-val
DNA replication initiation	GO:0006270		5.266E-08	1.211E-04
DNA-dependent DNA replication	GO:0006261		1.152E-06	1.325E-03
positive regulation of cyclin-dependent protein kinase activity	GO:0045737		4.941E-06	3.788E-03
thymus development	GO:0048538		8.466E-06	4.868E-03
T cell homeostasis	GO:0043029		1.293E-05	5.946E-03
lymphocyte homeostasis	GO:0002260		1.832E-05	7.024E-03
DNA unwinding during replication	GO:0006268		2.137E-05	7.022E-03
cellular response to unfolded protein	GO:0034620		2.817E-05	8.098E-03
DNA duplex unwinding	GO:0032508		3.191E-05	8.156E-03
response to endoplasmic reticulum stress	GO:0034976		4.923E-05	0.01132189
leukocyte homeostasis	GO:0001776		5.413E-05	0.01131886