Study run-b1

Study informations

127 subnetworks in total page | file

236 genes associated page | file

Enriched GO terms page

General informations

General Index page

Study Index page

Subnetwork 4091-4-real

score

Dataset	Score	P-val 1	P-val 2	P-val 3
Desmedt	0.1696	1.246e-02	4.365e-03	6.935e-02
IPC-NIBC-129	0.1542	6.098e-02	5.019e-02	2.867e-01
Ivshina_GPL96-GPL97	0.2363	7.815e-02	6.704e-02	5.699e-01
Loi_GPL570	0.2573	7.639e-02	9.788e-02	3.118e-01
Loi_GPL96-GPL97	0.1802	1.043e-02	5.202e-03	1.396e-01
Pawitan_GPL96-GPL97	0.3457	1.008e-01	5.497e-02	4.982e-01
Schmidt	0.2309	3.129e-02	3.309e-02	1.952e-01
Sotiriou	0.2560	8.751e-02	3.460e-02	5.253e-01
Wang	0.1746	7.393e-02	5.761e-02	2.419e-01
Zhang	0.2542	4.971e-03	2.333e-03	2.627e-02

Expression data for subnetwork 4091-4-real in each dataset

Desmedt | IPC-NIBC-129 | Ivshina_GPL96-GPL97 | Loi_GPL570 | Loi_GPL96-GPL97 | Pawitan_GPL96-GPL97 | Schmidt | Sotiriou | Wang | Zhang |

Subnetwork structure for each dataset

Desmedt IPC-NIBC-129 Ivshina_GPL96-GPL97 Loi_GPL570 Loi_GPL96-GPL97 Pawitan_GPL96-GPL97 Schmidt Sotiriou Wang Zhang

Desmedt

Score for each gene in subnetwork 4091-4-real in each dataset

Gene Symbol	Links	Frequency	Frequency Rank	Subnetwork score rank	Global rank	Desmedt	IPC-NIBC-129	Ivshina_GPL96-GPL97	Loi_GPL570	Loi_GPL96-GPL97	Pawitan_GPL96-GPL97	Schmidt	Sotiriou	Wang	Zhang
pcna		39	3	8	3	0.096	0.202	0.109	0.180	0.118	0.256	0.151	0.059	0.162	0.123
fen1		7	15	8	6	0.045	0.194	0.169	0.196	0.136	0.332	0.221	0.144	0.106	0.056
cttn		5	20	8	9	0.067	0.065	0.123	0.238	0.126	0.216	0.069	0.115	0.129	0.025
ccnd1		97	2	8	2	0.127	-0.183	0.062	0.190	0.157	0.105	-0.107	0.174	0.106	0.144
smad6		2	53	145	130	0.083	0.077	0.039	-0.005	0.051	-0.105	0.121	-0.019	0.161	0.065
cdc2		99	1	1	1	0.073	0.247	0.206	0.172	0.247	0.282	0.226	0.221	0.067	0.297
stambp		2	53	145	130	0.038	0.150	0.160	0.131	0.100	0.223	0.284	0.065	0.076	0.050
grb2		6	17	8	7	0.084	-0.013	0.086	-0.031	0.162	0.065	0.158	0.127	-0.097	0.194

GO Enrichment output for subnetwork 4091-4-real in each dataset

Desmedt file

Name	Accession Number	Link	P-val	Corrected P-val
response to UV	GO:0009411		9.322E-06	0.02143968
positive regulation of cyclin-dependent protein kinase activity	GO:0045737		1.645E-05	0.01891522
phosphoinositide-mediated signaling	GO:0048015		3.461E-05	0.02653498
UV protection	GO:0009650		3.519E-05	0.02023386
response to light stimulus	GO:0009416		8.532E-05	0.03924869
cellular response to unfolded protein	GO:0034620		9.354E-05	0.03585625
nucleotide-excision repair. DNA gap filling	GO:0006297		9.354E-05	0.03073393
response to endoplasmic reticulum stress	GO:0034976		1.633E-04	0.04693587
ER-nuclear signaling pathway	GO:0006984		1.965E-04	0.05020996
insulin receptor signaling pathway	GO:0008286		2.142E-04	0.04927075
fat cell differentiation	GO:0045444		2.142E-04	0.04479159

IPC-NIBC-129 file

Name	Accession Number	Link	P-val	Corrected P-val
response to UV	GO:0009411		3.338E-06	8.154E-03
positive regulation of cyclin-dependent protein kinase activity	GO:0045737		7.565E-06	9.241E-03
phosphoinositide-mediated signaling	GO:0048015		8.533E-06	6.949E-03
UV protection	GO:0009650		1.485E-05	9.067E-03
nucleotide-excision repair. DNA gap filling	GO:0006297		3.234E-05	0.01580162
cellular response to unfolded protein	GO:0034620		5.114E-05	0.02082279
response to endoplasmic reticulum stress	GO:0034976		8.731E-05	0.03047131
insulin receptor signaling pathway	GO:0008286		9.427E-05	0.02878621
epidermal growth factor receptor signaling pathway	GO:0007173		1.015E-04	0.02754724
fat cell differentiation	GO:0045444		1.015E-04	0.02479252
base-excision repair	GO:0006284		1.015E-04	0.02253865

Ivshina_GPL96-GPL97 file

Name	Accession Number	Link	P-val	Corrected P-val
response to UV	GO:0009411		4.888E-06	0.0117604
positive regulation of cyclin-dependent protein kinase activity	GO:0045737		1.053E-05	0.01267243
phosphoinositide-mediated signaling	GO:0048015		1.397E-05	0.01120107
UV protection	GO:0009650		2.067E-05	0.0124321
nucleotide-excision repair. DNA gap filling	GO:0006297		4.501E-05	0.02165887
cellular response to unfolded protein	GO:0034620		6.407E-05	0.02569089
response to endoplasmic reticulum stress	GO:0034976		1.121E-04	0.0385458
insulin receptor signaling pathway	GO:0008286		1.214E-04	0.03652446
epidermal growth factor receptor signaling pathway	GO:0007173		1.311E-04	0.03505029
fat cell differentiation	GO:0045444		1.311E-04	0.03154526
base-excision repair	GO:0006284		1.311E-04	0.02867751

Loi_GPL570 file

Name	Accession Number	Link	P-val	Corrected P-val
response to UV	GO:0009411		3.338E-06	8.154E-03
positive regulation of cyclin-dependent protein kinase activity	GO:0045737		7.565E-06	9.241E-03
phosphoinositide-mediated signaling	GO:0048015		8.533E-06	6.949E-03
UV protection	GO:0009650		1.485E-05	9.067E-03
nucleotide-excision repair. DNA gap filling	GO:0006297		3.234E-05	0.01580162
cellular response to unfolded protein	GO:0034620		5.114E-05	0.02082279
response to endoplasmic reticulum stress	GO:0034976		8.731E-05	0.03047131
insulin receptor signaling pathway	GO:0008286		9.427E-05	0.02878621
epidermal growth factor receptor signaling pathway	GO:0007173		1.015E-04	0.02754724
fat cell differentiation	GO:0045444		1.015E-04	0.02479252
base-excision repair	GO:0006284		1.015E-04	0.02253865

Loi_GPL96-GPL97 file

Name	Accession Number	Link	P-val	Corrected P-val
response to UV	GO:0009411		4.888E-06	0.0117604
positive regulation of cyclin-dependent protein kinase activity	GO:0045737		1.053E-05	0.01267243
phosphoinositide-mediated signaling	GO:0048015		1.397E-05	0.01120107
UV protection	GO:0009650		2.067E-05	0.0124321
nucleotide-excision repair. DNA gap filling	GO:0006297		4.501E-05	0.02165887
cellular response to unfolded protein	GO:0034620		6.407E-05	0.02569089
response to endoplasmic reticulum stress	GO:0034976		1.121E-04	0.0385458
insulin receptor signaling pathway	GO:0008286		1.214E-04	0.03652446
epidermal growth factor receptor signaling pathway	GO:0007173		1.311E-04	0.03505029
fat cell differentiation	GO:0045444		1.311E-04	0.03154526
base-excision repair	GO:0006284		1.311E-04	0.02867751

Pawitan_GPL96-GPL97 file

Name	Accession Number	Link	P-val	Corrected P-val
response to UV	GO:0009411		4.888E-06	0.0117604
positive regulation of cyclin-dependent protein kinase activity	GO:0045737		1.053E-05	0.01267243
phosphoinositide-mediated signaling	GO:0048015		1.397E-05	0.01120107
UV protection	GO:0009650		2.067E-05	0.0124321
nucleotide-excision repair. DNA gap filling	GO:0006297		4.501E-05	0.02165887
cellular response to unfolded protein	GO:0034620		6.407E-05	0.02569089
response to endoplasmic reticulum stress	GO:0034976		1.121E-04	0.0385458
insulin receptor signaling pathway	GO:0008286		1.214E-04	0.03652446
epidermal growth factor receptor signaling pathway	GO:0007173		1.311E-04	0.03505029
fat cell differentiation	GO:0045444		1.311E-04	0.03154526
base-excision repair	GO:0006284		1.311E-04	0.02867751

Schmidt file

Name	Accession Number	Link	P-val	Corrected P-val
response to UV	GO:0009411		9.322E-06	0.02143968
positive regulation of cyclin-dependent protein kinase activity	GO:0045737		1.645E-05	0.01891522
phosphoinositide-mediated signaling	GO:0048015		3.461E-05	0.02653498
UV protection	GO:0009650		3.519E-05	0.02023386
response to light stimulus	GO:0009416		8.532E-05	0.03924869
cellular response to unfolded protein	GO:0034620		9.354E-05	0.03585625
nucleotide-excision repair. DNA gap filling	GO:0006297		9.354E-05	0.03073393
response to endoplasmic reticulum stress	GO:0034976		1.633E-04	0.04693587
ER-nuclear signaling pathway	GO:0006984		1.965E-04	0.05020996
insulin receptor signaling pathway	GO:0008286		2.142E-04	0.04927075
fat cell differentiation	GO:0045444		2.142E-04	0.04479159

Sotiriou file

Name	Accession Number	Link	P-val	Corrected P-val
response to UV	GO:0009411		9.322E-06	0.02143968
positive regulation of cyclin-dependent protein kinase activity	GO:0045737		1.645E-05	0.01891522
phosphoinositide-mediated signaling	GO:0048015		3.461E-05	0.02653498
UV protection	GO:0009650		3.519E-05	0.02023386
response to light stimulus	GO:0009416		8.532E-05	0.03924869
cellular response to unfolded protein	GO:0034620		9.354E-05	0.03585625
nucleotide-excision repair. DNA gap filling	GO:0006297		9.354E-05	0.03073393
response to endoplasmic reticulum stress	GO:0034976		1.633E-04	0.04693587
ER-nuclear signaling pathway	GO:0006984		1.965E-04	0.05020996
insulin receptor signaling pathway	GO:0008286		2.142E-04	0.04927075
fat cell differentiation	GO:0045444		2.142E-04	0.04479159

Wang file

Name	Accession Number	Link	P-val	Corrected P-val
response to UV	GO:0009411		9.322E-06	0.02143968
positive regulation of cyclin-dependent protein kinase activity	GO:0045737		1.645E-05	0.01891522
phosphoinositide-mediated signaling	GO:0048015		3.461E-05	0.02653498
UV protection	GO:0009650		3.519E-05	0.02023386
response to light stimulus	GO:0009416		8.532E-05	0.03924869
cellular response to unfolded protein	GO:0034620		9.354E-05	0.03585625
nucleotide-excision repair. DNA gap filling	GO:0006297		9.354E-05	0.03073393
response to endoplasmic reticulum stress	GO:0034976		1.633E-04	0.04693587
ER-nuclear signaling pathway	GO:0006984		1.965E-04	0.05020996
insulin receptor signaling pathway	GO:0008286		2.142E-04	0.04927075
fat cell differentiation	GO:0045444		2.142E-04	0.04479159

Zhang file

Name	Accession Number	Link	P-val	Corrected P-val
response to UV	GO:0009411		9.322E-06	0.02143968
positive regulation of cyclin-dependent protein kinase activity	GO:0045737		1.645E-05	0.01891522
phosphoinositide-mediated signaling	GO:0048015		3.461E-05	0.02653498
UV protection	GO:0009650		3.519E-05	0.02023386
response to light stimulus	GO:0009416		8.532E-05	0.03924869
cellular response to unfolded protein	GO:0034620		9.354E-05	0.03585625
nucleotide-excision repair. DNA gap filling	GO:0006297		9.354E-05	0.03073393
response to endoplasmic reticulum stress	GO:0034976		1.633E-04	0.04693587
ER-nuclear signaling pathway	GO:0006984		1.965E-04	0.05020996
insulin receptor signaling pathway	GO:0008286		2.142E-04	0.04927075
fat cell differentiation	GO:0045444		2.142E-04	0.04479159