Study run-b1
Study informations
127 subnetworks in total page | file
236 genes associated page | file
Enriched GO terms page
General informations
General Index page
Study Index page
Subnetwork 3925-4-real
score
| Dataset | Score | P-val 1 | P-val 2 | P-val 3 |
|---|
| Desmedt | 0.1672 | 1.378e-02 | 5.006e-03 | 7.506e-02 |
|---|
| IPC-NIBC-129 | 0.2404 | 5.365e-02 | 4.338e-02 | 2.556e-01 |
|---|
| Ivshina_GPL96-GPL97 | 0.2315 | 1.439e-02 | 9.336e-03 | 1.708e-01 |
|---|
| Loi_GPL570 | 0.2674 | 1.506e-01 | 1.824e-01 | 5.002e-01 |
|---|
| Loi_GPL96-GPL97 | 0.2058 | 1.147e-02 | 5.906e-03 | 1.552e-01 |
|---|
| Pawitan_GPL96-GPL97 | 0.3428 | 7.146e-02 | 3.537e-02 | 3.982e-01 |
|---|
| Schmidt | 0.1790 | 1.018e-02 | 1.105e-02 | 7.370e-02 |
|---|
| Sotiriou | 0.3267 | 5.788e-02 | 1.916e-02 | 4.023e-01 |
|---|
| Wang | 0.1471 | 1.178e-01 | 1.032e-01 | 3.387e-01 |
|---|
| Zhang | 0.2857 | 5.227e-03 | 2.467e-03 | 2.739e-02 |
|---|
Expression data for subnetwork 3925-4-real in each dataset
Desmedt |
IPC-NIBC-129 |
Ivshina_GPL96-GPL97 |
Loi_GPL570 |
Loi_GPL96-GPL97 |
Pawitan_GPL96-GPL97 |
Schmidt |
Sotiriou |
Wang |
Zhang |
Subnetwork structure for each dataset
- Desmedt
Score for each gene in subnetwork 3925-4-real in each dataset
| Gene Symbol | Links | Frequency | Frequency Rank | Subnetwork score rank | Global rank |
Desmedt | IPC-NIBC-129 | Ivshina_GPL96-GPL97 | Loi_GPL570 | Loi_GPL96-GPL97 | Pawitan_GPL96-GPL97 | Schmidt | Sotiriou | Wang | Zhang |
|---|
| tsc1 |   | 31 | 5 | 26 | 15 | 0.049 | 0.012 | -0.055 | 0.072 | 0.055 | -0.196 | 0.006 | 0.010 | 0.043 | -0.007 |
|---|
| cdc2 | | 99 | 1 | 1 | 1 | 0.073 | 0.247 | 0.206 | 0.172 | 0.247 | 0.282 | 0.226 | 0.221 | 0.067 | 0.297 |
|---|
| stmn2 | | 19 | 8 | 32 | 18 | 0.057 | 0.106 | 0.005 | 0.052 | 0.110 | 0.006 | 0.034 | 0.103 | 0.075 | 0.113 |
|---|
| ccnb1 | | 33 | 4 | 68 | 40 | 0.082 | 0.246 | 0.212 | 0.224 | 0.256 | 0.351 | 0.129 | 0.249 | 0.152 | 0.167 |
|---|
| stmn1 | | 1 | 90 | 68 | 80 | 0.047 | 0.304 | 0.149 | 0.091 | 0.131 | 0.275 | 0.232 | 0.130 | 0.074 | 0.130 |
|---|
| ccnd1 | | 97 | 2 | 8 | 2 | 0.127 | -0.183 | 0.062 | 0.190 | 0.157 | 0.105 | -0.107 | 0.174 | 0.106 | 0.144 |
|---|
GO Enrichment output for subnetwork 3925-4-real in each dataset
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| negative regulation of protein ubiquitination | GO:0031397 |  | 2.354E-06 | 5.414E-03 |
|---|
| positive regulation of Rho GTPase activity | GO:0032321 | | 2.354E-06 | 2.707E-03 |
|---|
| anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process | GO:0031145 | | 3.345E-06 | 2.565E-03 |
|---|
| positive regulation of ubiquitin-protein ligase activity during mitotic cell cycle | GO:0051437 | | 3.514E-06 | 2.021E-03 |
|---|
| positive regulation of ubiquitin-protein ligase activity | GO:0051443 | | 4.056E-06 | 1.866E-03 |
|---|
| regulation of ubiquitin-protein ligase activity during mitotic cell cycle | GO:0051439 | | 4.056E-06 | 1.555E-03 |
|---|
| positive regulation of ligase activity | GO:0051351 | | 4.86E-06 | 1.597E-03 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 4.941E-06 | 1.421E-03 |
|---|
| regulation of focal adhesion formation | GO:0051893 | | 4.941E-06 | 1.263E-03 |
|---|
| regulation of ubiquitin-protein ligase activity | GO:0051438 | | 5.299E-06 | 1.219E-03 |
|---|
| regulation of ligase activity | GO:0051340 | | 6.254E-06 | 1.308E-03 |
|---|
IPC-NIBC-129 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| negative regulation of protein ubiquitination | GO:0031397 | | 8.703E-07 | 2.126E-03 |
|---|
| anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process | GO:0031145 | | 1.093E-06 | 1.335E-03 |
|---|
| positive regulation of ubiquitin-protein ligase activity during mitotic cell cycle | GO:0051437 | | 1.142E-06 | 9.303E-04 |
|---|
| positive regulation of ubiquitin-protein ligase activity | GO:0051443 | | 1.3E-06 | 7.938E-04 |
|---|
| regulation of ubiquitin-protein ligase activity during mitotic cell cycle | GO:0051439 | | 1.3E-06 | 6.35E-04 |
|---|
| activation of Ras GTPase activity | GO:0032856 | | 1.305E-06 | 5.314E-04 |
|---|
| positive regulation of ligase activity | GO:0051351 | | 1.593E-06 | 5.559E-04 |
|---|
| regulation of ubiquitin-protein ligase activity | GO:0051438 | | 1.721E-06 | 5.256E-04 |
|---|
| regulation of ligase activity | GO:0051340 | | 2.072E-06 | 5.625E-04 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 2.436E-06 | 5.95E-04 |
|---|
| regulation of focal adhesion formation | GO:0051893 | | 2.436E-06 | 5.409E-04 |
|---|
Ivshina_GPL96-GPL97 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| negative regulation of protein ubiquitination | GO:0031397 | | 1.212E-06 | 2.916E-03 |
|---|
| activation of Ras GTPase activity | GO:0032856 | | 1.212E-06 | 1.458E-03 |
|---|
| anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process | GO:0031145 | | 1.793E-06 | 1.438E-03 |
|---|
| positive regulation of ubiquitin-protein ligase activity during mitotic cell cycle | GO:0051437 | | 1.874E-06 | 1.127E-03 |
|---|
| positive regulation of ubiquitin-protein ligase activity | GO:0051443 | | 2.132E-06 | 1.026E-03 |
|---|
| regulation of ubiquitin-protein ligase activity during mitotic cell cycle | GO:0051439 | | 2.132E-06 | 8.55E-04 |
|---|
| positive regulation of ligase activity | GO:0051351 | | 2.612E-06 | 8.979E-04 |
|---|
| regulation of ubiquitin-protein ligase activity | GO:0051438 | | 2.823E-06 | 8.49E-04 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 3.392E-06 | 9.067E-04 |
|---|
| regulation of focal adhesion formation | GO:0051893 | | 3.392E-06 | 8.161E-04 |
|---|
| regulation of ligase activity | GO:0051340 | | 3.398E-06 | 7.433E-04 |
|---|
Loi_GPL570 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| negative regulation of protein ubiquitination | GO:0031397 | | 8.703E-07 | 2.126E-03 |
|---|
| anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process | GO:0031145 | | 1.093E-06 | 1.335E-03 |
|---|
| positive regulation of ubiquitin-protein ligase activity during mitotic cell cycle | GO:0051437 | | 1.142E-06 | 9.303E-04 |
|---|
| positive regulation of ubiquitin-protein ligase activity | GO:0051443 | | 1.3E-06 | 7.938E-04 |
|---|
| regulation of ubiquitin-protein ligase activity during mitotic cell cycle | GO:0051439 | | 1.3E-06 | 6.35E-04 |
|---|
| activation of Ras GTPase activity | GO:0032856 | | 1.305E-06 | 5.314E-04 |
|---|
| positive regulation of ligase activity | GO:0051351 | | 1.593E-06 | 5.559E-04 |
|---|
| regulation of ubiquitin-protein ligase activity | GO:0051438 | | 1.721E-06 | 5.256E-04 |
|---|
| regulation of ligase activity | GO:0051340 | | 2.072E-06 | 5.625E-04 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 2.436E-06 | 5.95E-04 |
|---|
| regulation of focal adhesion formation | GO:0051893 | | 2.436E-06 | 5.409E-04 |
|---|
Loi_GPL96-GPL97 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| negative regulation of protein ubiquitination | GO:0031397 | | 1.212E-06 | 2.916E-03 |
|---|
| activation of Ras GTPase activity | GO:0032856 | | 1.212E-06 | 1.458E-03 |
|---|
| anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process | GO:0031145 | | 1.793E-06 | 1.438E-03 |
|---|
| positive regulation of ubiquitin-protein ligase activity during mitotic cell cycle | GO:0051437 | | 1.874E-06 | 1.127E-03 |
|---|
| positive regulation of ubiquitin-protein ligase activity | GO:0051443 | | 2.132E-06 | 1.026E-03 |
|---|
| regulation of ubiquitin-protein ligase activity during mitotic cell cycle | GO:0051439 | | 2.132E-06 | 8.55E-04 |
|---|
| positive regulation of ligase activity | GO:0051351 | | 2.612E-06 | 8.979E-04 |
|---|
| regulation of ubiquitin-protein ligase activity | GO:0051438 | | 2.823E-06 | 8.49E-04 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 3.392E-06 | 9.067E-04 |
|---|
| regulation of focal adhesion formation | GO:0051893 | | 3.392E-06 | 8.161E-04 |
|---|
| regulation of ligase activity | GO:0051340 | | 3.398E-06 | 7.433E-04 |
|---|
Pawitan_GPL96-GPL97 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| negative regulation of protein ubiquitination | GO:0031397 | | 1.212E-06 | 2.916E-03 |
|---|
| activation of Ras GTPase activity | GO:0032856 | | 1.212E-06 | 1.458E-03 |
|---|
| anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process | GO:0031145 | | 1.793E-06 | 1.438E-03 |
|---|
| positive regulation of ubiquitin-protein ligase activity during mitotic cell cycle | GO:0051437 | | 1.874E-06 | 1.127E-03 |
|---|
| positive regulation of ubiquitin-protein ligase activity | GO:0051443 | | 2.132E-06 | 1.026E-03 |
|---|
| regulation of ubiquitin-protein ligase activity during mitotic cell cycle | GO:0051439 | | 2.132E-06 | 8.55E-04 |
|---|
| positive regulation of ligase activity | GO:0051351 | | 2.612E-06 | 8.979E-04 |
|---|
| regulation of ubiquitin-protein ligase activity | GO:0051438 | | 2.823E-06 | 8.49E-04 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 3.392E-06 | 9.067E-04 |
|---|
| regulation of focal adhesion formation | GO:0051893 | | 3.392E-06 | 8.161E-04 |
|---|
| regulation of ligase activity | GO:0051340 | | 3.398E-06 | 7.433E-04 |
|---|
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| negative regulation of protein ubiquitination | GO:0031397 | | 2.354E-06 | 5.414E-03 |
|---|
| positive regulation of Rho GTPase activity | GO:0032321 | | 2.354E-06 | 2.707E-03 |
|---|
| anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process | GO:0031145 | | 3.345E-06 | 2.565E-03 |
|---|
| positive regulation of ubiquitin-protein ligase activity during mitotic cell cycle | GO:0051437 | | 3.514E-06 | 2.021E-03 |
|---|
| positive regulation of ubiquitin-protein ligase activity | GO:0051443 | | 4.056E-06 | 1.866E-03 |
|---|
| regulation of ubiquitin-protein ligase activity during mitotic cell cycle | GO:0051439 | | 4.056E-06 | 1.555E-03 |
|---|
| positive regulation of ligase activity | GO:0051351 | | 4.86E-06 | 1.597E-03 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 4.941E-06 | 1.421E-03 |
|---|
| regulation of focal adhesion formation | GO:0051893 | | 4.941E-06 | 1.263E-03 |
|---|
| regulation of ubiquitin-protein ligase activity | GO:0051438 | | 5.299E-06 | 1.219E-03 |
|---|
| regulation of ligase activity | GO:0051340 | | 6.254E-06 | 1.308E-03 |
|---|
Sotiriou file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| negative regulation of protein ubiquitination | GO:0031397 | | 2.354E-06 | 5.414E-03 |
|---|
| positive regulation of Rho GTPase activity | GO:0032321 | | 2.354E-06 | 2.707E-03 |
|---|
| anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process | GO:0031145 | | 3.345E-06 | 2.565E-03 |
|---|
| positive regulation of ubiquitin-protein ligase activity during mitotic cell cycle | GO:0051437 | | 3.514E-06 | 2.021E-03 |
|---|
| positive regulation of ubiquitin-protein ligase activity | GO:0051443 | | 4.056E-06 | 1.866E-03 |
|---|
| regulation of ubiquitin-protein ligase activity during mitotic cell cycle | GO:0051439 | | 4.056E-06 | 1.555E-03 |
|---|
| positive regulation of ligase activity | GO:0051351 | | 4.86E-06 | 1.597E-03 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 4.941E-06 | 1.421E-03 |
|---|
| regulation of focal adhesion formation | GO:0051893 | | 4.941E-06 | 1.263E-03 |
|---|
| regulation of ubiquitin-protein ligase activity | GO:0051438 | | 5.299E-06 | 1.219E-03 |
|---|
| regulation of ligase activity | GO:0051340 | | 6.254E-06 | 1.308E-03 |
|---|
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| negative regulation of protein ubiquitination | GO:0031397 | | 2.354E-06 | 5.414E-03 |
|---|
| positive regulation of Rho GTPase activity | GO:0032321 | | 2.354E-06 | 2.707E-03 |
|---|
| anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process | GO:0031145 | | 3.345E-06 | 2.565E-03 |
|---|
| positive regulation of ubiquitin-protein ligase activity during mitotic cell cycle | GO:0051437 | | 3.514E-06 | 2.021E-03 |
|---|
| positive regulation of ubiquitin-protein ligase activity | GO:0051443 | | 4.056E-06 | 1.866E-03 |
|---|
| regulation of ubiquitin-protein ligase activity during mitotic cell cycle | GO:0051439 | | 4.056E-06 | 1.555E-03 |
|---|
| positive regulation of ligase activity | GO:0051351 | | 4.86E-06 | 1.597E-03 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 4.941E-06 | 1.421E-03 |
|---|
| regulation of focal adhesion formation | GO:0051893 | | 4.941E-06 | 1.263E-03 |
|---|
| regulation of ubiquitin-protein ligase activity | GO:0051438 | | 5.299E-06 | 1.219E-03 |
|---|
| regulation of ligase activity | GO:0051340 | | 6.254E-06 | 1.308E-03 |
|---|
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| negative regulation of protein ubiquitination | GO:0031397 | | 2.354E-06 | 5.414E-03 |
|---|
| positive regulation of Rho GTPase activity | GO:0032321 | | 2.354E-06 | 2.707E-03 |
|---|
| anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process | GO:0031145 | | 3.345E-06 | 2.565E-03 |
|---|
| positive regulation of ubiquitin-protein ligase activity during mitotic cell cycle | GO:0051437 | | 3.514E-06 | 2.021E-03 |
|---|
| positive regulation of ubiquitin-protein ligase activity | GO:0051443 | | 4.056E-06 | 1.866E-03 |
|---|
| regulation of ubiquitin-protein ligase activity during mitotic cell cycle | GO:0051439 | | 4.056E-06 | 1.555E-03 |
|---|
| positive regulation of ligase activity | GO:0051351 | | 4.86E-06 | 1.597E-03 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 4.941E-06 | 1.421E-03 |
|---|
| regulation of focal adhesion formation | GO:0051893 | | 4.941E-06 | 1.263E-03 |
|---|
| regulation of ubiquitin-protein ligase activity | GO:0051438 | | 5.299E-06 | 1.219E-03 |
|---|
| regulation of ligase activity | GO:0051340 | | 6.254E-06 | 1.308E-03 |
|---|
