Study run-b1
Study informations
127 subnetworks in total page | file
236 genes associated page | file
Enriched GO terms page
General informations
General Index page
Study Index page
Subnetwork 3781-4-real
score
| Dataset | Score | P-val 1 | P-val 2 | P-val 3 |
|---|
| Desmedt | 0.1724 | 1.188e-02 | 4.089e-03 | 6.677e-02 |
|---|
| IPC-NIBC-129 | 0.2093 | 4.315e-02 | 3.383e-02 | 2.086e-01 |
|---|
| Ivshina_GPL96-GPL97 | 0.2386 | 2.671e-02 | 1.928e-02 | 2.810e-01 |
|---|
| Loi_GPL570 | 0.2845 | 1.064e-01 | 1.327e-01 | 3.963e-01 |
|---|
| Loi_GPL96-GPL97 | 0.1754 | 9.356e-03 | 4.495e-03 | 1.232e-01 |
|---|
| Pawitan_GPL96-GPL97 | 0.2883 | 9.123e-02 | 4.839e-02 | 4.680e-01 |
|---|
| Schmidt | 0.2057 | 1.460e-02 | 1.571e-02 | 1.020e-01 |
|---|
| Sotiriou | 0.3041 | 9.455e-02 | 3.863e-02 | 5.499e-01 |
|---|
| Wang | 0.1919 | 5.491e-02 | 3.950e-02 | 1.935e-01 |
|---|
| Zhang | 0.2633 | 1.312e-02 | 6.898e-03 | 5.829e-02 |
|---|
Expression data for subnetwork 3781-4-real in each dataset
Desmedt |
IPC-NIBC-129 |
Ivshina_GPL96-GPL97 |
Loi_GPL570 |
Loi_GPL96-GPL97 |
Pawitan_GPL96-GPL97 |
Schmidt |
Sotiriou |
Wang |
Zhang |
Subnetwork structure for each dataset
- Desmedt
Score for each gene in subnetwork 3781-4-real in each dataset
| Gene Symbol | Links | Frequency | Frequency Rank | Subnetwork score rank | Global rank |
Desmedt | IPC-NIBC-129 | Ivshina_GPL96-GPL97 | Loi_GPL570 | Loi_GPL96-GPL97 | Pawitan_GPL96-GPL97 | Schmidt | Sotiriou | Wang | Zhang |
|---|
| calm1 |   | 16 | 10 | 35 | 19 | 0.038 | 0.023 | 0.171 | 0.277 | 0.113 | 0.007 | 0.171 | 0.112 | 0.087 | 0.162 |
|---|
| rala | | 2 | 53 | 94 | 92 | 0.080 | 0.155 | 0.091 | 0.231 | 0.055 | 0.050 | 0.196 | 0.045 | 0.138 | 0.065 |
|---|
| cdc2 | | 99 | 1 | 1 | 1 | 0.073 | 0.247 | 0.206 | 0.172 | 0.247 | 0.282 | 0.226 | 0.221 | 0.067 | 0.297 |
|---|
| kcnn2 | | 1 | 90 | 94 | 103 | 0.066 | 0.137 | 0.116 | 0.165 | 0.082 | 0.104 | -0.095 | 0.192 | 0.019 | -0.009 |
|---|
| hmmr | | 10 | 14 | 35 | 23 | 0.112 | 0.310 | 0.147 | 0.127 | 0.145 | 0.221 | 0.179 | 0.233 | 0.227 | 0.144 |
|---|
| ccnd1 | | 97 | 2 | 8 | 2 | 0.127 | -0.183 | 0.062 | 0.190 | 0.157 | 0.105 | -0.107 | 0.174 | 0.106 | 0.144 |
|---|
GO Enrichment output for subnetwork 3781-4-real in each dataset
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 |  | 1.439E-05 | 0.03310794 |
|---|
| regulation of cell projection assembly | GO:0060491 | | 3.08E-05 | 0.03542006 |
|---|
| actin cytoskeleton reorganization | GO:0031532 | | 3.763E-05 | 0.02884649 |
|---|
| cellular response to unfolded protein | GO:0034620 | | 8.189E-05 | 0.04708646 |
|---|
| response to endoplasmic reticulum stress | GO:0034976 | | 1.43E-04 | 0.06575784 |
|---|
| ER-nuclear signaling pathway | GO:0006984 | | 1.721E-04 | 0.06595336 |
|---|
| positive regulation of cell projection organization | GO:0031346 | | 1.876E-04 | 0.06164011 |
|---|
| fat cell differentiation | GO:0045444 | | 1.876E-04 | 0.0539351 |
|---|
| response to calcium ion | GO:0051592 | | 5.26E-04 | 0.13441891 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 6.08E-04 | 0.13984611 |
|---|
| regulation of cell projection organization | GO:0031344 | | 6.367E-04 | 0.13312079 |
|---|
IPC-NIBC-129 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| positive regulation of filopodium assembly | GO:0051491 | | 3.005E-06 | 7.341E-03 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 8.405E-06 | 0.01026679 |
|---|
| regulation of cell projection assembly | GO:0060491 | | 1.979E-05 | 0.01611176 |
|---|
| actin cytoskeleton reorganization | GO:0031532 | | 3.144E-05 | 0.0192048 |
|---|
| cellular response to unfolded protein | GO:0034620 | | 5.68E-05 | 0.02775434 |
|---|
| response to endoplasmic reticulum stress | GO:0034976 | | 9.697E-05 | 0.03948207 |
|---|
| positive regulation of cell projection organization | GO:0031346 | | 1.047E-04 | 0.03653678 |
|---|
| fat cell differentiation | GO:0045444 | | 1.127E-04 | 0.03441727 |
|---|
| ER-nuclear signaling pathway | GO:0006984 | | 1.21E-04 | 0.0328482 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 3.067E-04 | 0.0749337 |
|---|
| positive regulation of cell cycle | GO:0045787 | | 3.341E-04 | 0.07419253 |
|---|
Ivshina_GPL96-GPL97 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| positive regulation of filopodium assembly | GO:0051491 | | 3.37E-06 | 8.109E-03 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 9.426E-06 | 0.01134 |
|---|
| regulation of cell projection assembly | GO:0060491 | | 2.219E-05 | 0.01779477 |
|---|
| actin cytoskeleton reorganization | GO:0031532 | | 3.057E-05 | 0.01838838 |
|---|
| cellular response to unfolded protein | GO:0034620 | | 5.734E-05 | 0.02759428 |
|---|
| response to endoplasmic reticulum stress | GO:0034976 | | 1.004E-04 | 0.04025689 |
|---|
| positive regulation of cell projection organization | GO:0031346 | | 1.174E-04 | 0.04034333 |
|---|
| fat cell differentiation | GO:0045444 | | 1.174E-04 | 0.03530041 |
|---|
| ER-nuclear signaling pathway | GO:0006984 | | 1.264E-04 | 0.03377988 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 3.438E-04 | 0.08271451 |
|---|
| response to calcium ion | GO:0051592 | | 3.589E-04 | 0.07850921 |
|---|
Loi_GPL570 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| positive regulation of filopodium assembly | GO:0051491 | | 3.005E-06 | 7.341E-03 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 8.405E-06 | 0.01026679 |
|---|
| regulation of cell projection assembly | GO:0060491 | | 1.979E-05 | 0.01611176 |
|---|
| actin cytoskeleton reorganization | GO:0031532 | | 3.144E-05 | 0.0192048 |
|---|
| cellular response to unfolded protein | GO:0034620 | | 5.68E-05 | 0.02775434 |
|---|
| response to endoplasmic reticulum stress | GO:0034976 | | 9.697E-05 | 0.03948207 |
|---|
| positive regulation of cell projection organization | GO:0031346 | | 1.047E-04 | 0.03653678 |
|---|
| fat cell differentiation | GO:0045444 | | 1.127E-04 | 0.03441727 |
|---|
| ER-nuclear signaling pathway | GO:0006984 | | 1.21E-04 | 0.0328482 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 3.067E-04 | 0.0749337 |
|---|
| positive regulation of cell cycle | GO:0045787 | | 3.341E-04 | 0.07419253 |
|---|
Loi_GPL96-GPL97 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| positive regulation of filopodium assembly | GO:0051491 | | 3.37E-06 | 8.109E-03 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 9.426E-06 | 0.01134 |
|---|
| regulation of cell projection assembly | GO:0060491 | | 2.219E-05 | 0.01779477 |
|---|
| actin cytoskeleton reorganization | GO:0031532 | | 3.057E-05 | 0.01838838 |
|---|
| cellular response to unfolded protein | GO:0034620 | | 5.734E-05 | 0.02759428 |
|---|
| response to endoplasmic reticulum stress | GO:0034976 | | 1.004E-04 | 0.04025689 |
|---|
| positive regulation of cell projection organization | GO:0031346 | | 1.174E-04 | 0.04034333 |
|---|
| fat cell differentiation | GO:0045444 | | 1.174E-04 | 0.03530041 |
|---|
| ER-nuclear signaling pathway | GO:0006984 | | 1.264E-04 | 0.03377988 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 3.438E-04 | 0.08271451 |
|---|
| response to calcium ion | GO:0051592 | | 3.589E-04 | 0.07850921 |
|---|
Pawitan_GPL96-GPL97 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| positive regulation of filopodium assembly | GO:0051491 | | 3.37E-06 | 8.109E-03 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 9.426E-06 | 0.01134 |
|---|
| regulation of cell projection assembly | GO:0060491 | | 2.219E-05 | 0.01779477 |
|---|
| actin cytoskeleton reorganization | GO:0031532 | | 3.057E-05 | 0.01838838 |
|---|
| cellular response to unfolded protein | GO:0034620 | | 5.734E-05 | 0.02759428 |
|---|
| response to endoplasmic reticulum stress | GO:0034976 | | 1.004E-04 | 0.04025689 |
|---|
| positive regulation of cell projection organization | GO:0031346 | | 1.174E-04 | 0.04034333 |
|---|
| fat cell differentiation | GO:0045444 | | 1.174E-04 | 0.03530041 |
|---|
| ER-nuclear signaling pathway | GO:0006984 | | 1.264E-04 | 0.03377988 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 3.438E-04 | 0.08271451 |
|---|
| response to calcium ion | GO:0051592 | | 3.589E-04 | 0.07850921 |
|---|
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 1.439E-05 | 0.03310794 |
|---|
| regulation of cell projection assembly | GO:0060491 | | 3.08E-05 | 0.03542006 |
|---|
| actin cytoskeleton reorganization | GO:0031532 | | 3.763E-05 | 0.02884649 |
|---|
| cellular response to unfolded protein | GO:0034620 | | 8.189E-05 | 0.04708646 |
|---|
| response to endoplasmic reticulum stress | GO:0034976 | | 1.43E-04 | 0.06575784 |
|---|
| ER-nuclear signaling pathway | GO:0006984 | | 1.721E-04 | 0.06595336 |
|---|
| positive regulation of cell projection organization | GO:0031346 | | 1.876E-04 | 0.06164011 |
|---|
| fat cell differentiation | GO:0045444 | | 1.876E-04 | 0.0539351 |
|---|
| response to calcium ion | GO:0051592 | | 5.26E-04 | 0.13441891 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 6.08E-04 | 0.13984611 |
|---|
| regulation of cell projection organization | GO:0031344 | | 6.367E-04 | 0.13312079 |
|---|
Sotiriou file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 1.439E-05 | 0.03310794 |
|---|
| regulation of cell projection assembly | GO:0060491 | | 3.08E-05 | 0.03542006 |
|---|
| actin cytoskeleton reorganization | GO:0031532 | | 3.763E-05 | 0.02884649 |
|---|
| cellular response to unfolded protein | GO:0034620 | | 8.189E-05 | 0.04708646 |
|---|
| response to endoplasmic reticulum stress | GO:0034976 | | 1.43E-04 | 0.06575784 |
|---|
| ER-nuclear signaling pathway | GO:0006984 | | 1.721E-04 | 0.06595336 |
|---|
| positive regulation of cell projection organization | GO:0031346 | | 1.876E-04 | 0.06164011 |
|---|
| fat cell differentiation | GO:0045444 | | 1.876E-04 | 0.0539351 |
|---|
| response to calcium ion | GO:0051592 | | 5.26E-04 | 0.13441891 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 6.08E-04 | 0.13984611 |
|---|
| regulation of cell projection organization | GO:0031344 | | 6.367E-04 | 0.13312079 |
|---|
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 1.439E-05 | 0.03310794 |
|---|
| regulation of cell projection assembly | GO:0060491 | | 3.08E-05 | 0.03542006 |
|---|
| actin cytoskeleton reorganization | GO:0031532 | | 3.763E-05 | 0.02884649 |
|---|
| cellular response to unfolded protein | GO:0034620 | | 8.189E-05 | 0.04708646 |
|---|
| response to endoplasmic reticulum stress | GO:0034976 | | 1.43E-04 | 0.06575784 |
|---|
| ER-nuclear signaling pathway | GO:0006984 | | 1.721E-04 | 0.06595336 |
|---|
| positive regulation of cell projection organization | GO:0031346 | | 1.876E-04 | 0.06164011 |
|---|
| fat cell differentiation | GO:0045444 | | 1.876E-04 | 0.0539351 |
|---|
| response to calcium ion | GO:0051592 | | 5.26E-04 | 0.13441891 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 6.08E-04 | 0.13984611 |
|---|
| regulation of cell projection organization | GO:0031344 | | 6.367E-04 | 0.13312079 |
|---|
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 1.439E-05 | 0.03310794 |
|---|
| regulation of cell projection assembly | GO:0060491 | | 3.08E-05 | 0.03542006 |
|---|
| actin cytoskeleton reorganization | GO:0031532 | | 3.763E-05 | 0.02884649 |
|---|
| cellular response to unfolded protein | GO:0034620 | | 8.189E-05 | 0.04708646 |
|---|
| response to endoplasmic reticulum stress | GO:0034976 | | 1.43E-04 | 0.06575784 |
|---|
| ER-nuclear signaling pathway | GO:0006984 | | 1.721E-04 | 0.06595336 |
|---|
| positive regulation of cell projection organization | GO:0031346 | | 1.876E-04 | 0.06164011 |
|---|
| fat cell differentiation | GO:0045444 | | 1.876E-04 | 0.0539351 |
|---|
| response to calcium ion | GO:0051592 | | 5.26E-04 | 0.13441891 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 6.08E-04 | 0.13984611 |
|---|
| regulation of cell projection organization | GO:0031344 | | 6.367E-04 | 0.13312079 |
|---|
