Study run-b1

Study informations

127 subnetworks in total page | file

236 genes associated page | file

Enriched GO terms page

General informations

General Index page

Study Index page

Subnetwork 3159-4-real

score

Dataset	Score	P-val 1	P-val 2	P-val 3
Desmedt	0.1878	1.108e-02	3.718e-03	6.319e-02
IPC-NIBC-129	0.1508	1.068e-01	9.470e-02	4.543e-01
Ivshina_GPL96-GPL97	0.2419	8.344e-02	7.229e-02	5.904e-01
Loi_GPL570	0.2126	8.244e-02	1.050e-01	3.299e-01
Loi_GPL96-GPL97	0.1911	5.059e-03	1.960e-03	5.772e-02
Pawitan_GPL96-GPL97	0.3315	1.352e-01	8.009e-02	5.919e-01
Schmidt	0.2251	2.480e-02	2.637e-02	1.611e-01
Sotiriou	0.2708	7.344e-02	2.693e-02	4.712e-01
Wang	0.1399	1.329e-01	1.198e-01	3.686e-01
Zhang	0.2268	6.327e-03	3.053e-03	3.209e-02

Expression data for subnetwork 3159-4-real in each dataset

Desmedt | IPC-NIBC-129 | Ivshina_GPL96-GPL97 | Loi_GPL570 | Loi_GPL96-GPL97 | Pawitan_GPL96-GPL97 | Schmidt | Sotiriou | Wang | Zhang |

Subnetwork structure for each dataset

Desmedt IPC-NIBC-129 Ivshina_GPL96-GPL97 Loi_GPL570 Loi_GPL96-GPL97 Pawitan_GPL96-GPL97 Schmidt Sotiriou Wang Zhang

Desmedt

Score for each gene in subnetwork 3159-4-real in each dataset

Gene Symbol	Links	Frequency	Frequency Rank	Subnetwork score rank	Global rank	Desmedt	IPC-NIBC-129	Ivshina_GPL96-GPL97	Loi_GPL570	Loi_GPL96-GPL97	Pawitan_GPL96-GPL97	Schmidt	Sotiriou	Wang	Zhang
sp1		31	5	16	8	0.054	0.186	0.147	0.242	0.125	0.202	0.284	0.227	0.194	0.091
hmga1		1	90	208	208	0.092	0.071	0.202	0.017	0.101	0.159	0.151	0.107	-0.054	-0.051
ccnb2		4	27	188	164	0.164	0.176	0.204	0.123	0.172	0.366	0.240	0.169	0.144	0.211
cdc2		99	1	1	1	0.073	0.247	0.206	0.172	0.247	0.282	0.226	0.221	0.067	0.297
ccnd1		97	2	8	2	0.127	-0.183	0.062	0.190	0.157	0.105	-0.107	0.174	0.106	0.144

GO Enrichment output for subnetwork 3159-4-real in each dataset

Desmedt file

Name	Accession Number	Link	P-val	Corrected P-val
regulation of chromosome organization	GO:0033044		3.08E-07	7.083E-04
positive regulation of cell cycle	GO:0045787		1.889E-06	2.172E-03
positive regulation of gene expression. epigenetic	GO:0045815		4.412E-06	3.383E-03
regulation of chromatin assembly or disassembly	GO:0001672		4.412E-06	2.537E-03
positive regulation of cyclin-dependent protein kinase activity	GO:0045737		6.175E-06	2.841E-03
negative regulation of organelle organization	GO:0010639		7.873E-06	3.018E-03
nucleosome disassembly	GO:0006337		8.231E-06	2.704E-03
thymus development	GO:0048538		1.058E-05	3.042E-03
T cell homeostasis	GO:0043029		1.615E-05	4.128E-03
lysogeny	GO:0030069		1.615E-05	3.715E-03
lymphocyte homeostasis	GO:0002260		2.289E-05	4.787E-03

IPC-NIBC-129 file

Name	Accession Number	Link	P-val	Corrected P-val
regulation of chromosome organization	GO:0033044		6.423E-08	1.569E-04
positive regulation of cell cycle	GO:0045787		3.785E-07	4.623E-04
meiotic chromosome segregation	GO:0045132		8.703E-07	7.087E-04
establishment of spindle localization	GO:0051293		1.305E-06	7.971E-04
negative regulation of organelle organization	GO:0010639		1.788E-06	8.737E-04
regulation of chromatin assembly or disassembly	GO:0001672		1.827E-06	7.439E-04
positive regulation of cyclin-dependent protein kinase activity	GO:0045737		2.436E-06	8.5E-04
nucleosome disassembly	GO:0006337		2.436E-06	7.437E-04
positive regulation of gene expression. epigenetic	GO:0045815		3.131E-06	8.499E-04
thymus development	GO:0048538		4.782E-06	1.168E-03
lysogeny	GO:0030069		4.782E-06	1.062E-03

Ivshina_GPL96-GPL97 file

Name	Accession Number	Link	P-val	Corrected P-val
regulation of chromosome organization	GO:0033044		7.678E-08	1.847E-04
positive regulation of cell cycle	GO:0045787		4.524E-07	5.442E-04
meiotic chromosome segregation	GO:0045132		9.918E-07	7.954E-04
establishment of spindle localization	GO:0051293		1.487E-06	8.946E-04
negative regulation of organelle organization	GO:0010639		1.979E-06	9.524E-04
regulation of chromatin assembly or disassembly	GO:0001672		2.082E-06	8.349E-04
positive regulation of cyclin-dependent protein kinase activity	GO:0045737		2.775E-06	9.54E-04
nucleosome disassembly	GO:0006337		2.775E-06	8.347E-04
positive regulation of gene expression. epigenetic	GO:0045815		3.568E-06	9.538E-04
thymus development	GO:0048538		5.449E-06	1.311E-03
lysogeny	GO:0030069		5.449E-06	1.192E-03

Loi_GPL570 file

Name	Accession Number	Link	P-val	Corrected P-val
regulation of chromosome organization	GO:0033044		6.423E-08	1.569E-04
positive regulation of cell cycle	GO:0045787		3.785E-07	4.623E-04
meiotic chromosome segregation	GO:0045132		8.703E-07	7.087E-04
establishment of spindle localization	GO:0051293		1.305E-06	7.971E-04
negative regulation of organelle organization	GO:0010639		1.788E-06	8.737E-04
regulation of chromatin assembly or disassembly	GO:0001672		1.827E-06	7.439E-04
positive regulation of cyclin-dependent protein kinase activity	GO:0045737		2.436E-06	8.5E-04
nucleosome disassembly	GO:0006337		2.436E-06	7.437E-04
positive regulation of gene expression. epigenetic	GO:0045815		3.131E-06	8.499E-04
thymus development	GO:0048538		4.782E-06	1.168E-03
lysogeny	GO:0030069		4.782E-06	1.062E-03

Loi_GPL96-GPL97 file

Name	Accession Number	Link	P-val	Corrected P-val
regulation of chromosome organization	GO:0033044		7.678E-08	1.847E-04
positive regulation of cell cycle	GO:0045787		4.524E-07	5.442E-04
meiotic chromosome segregation	GO:0045132		9.918E-07	7.954E-04
establishment of spindle localization	GO:0051293		1.487E-06	8.946E-04
negative regulation of organelle organization	GO:0010639		1.979E-06	9.524E-04
regulation of chromatin assembly or disassembly	GO:0001672		2.082E-06	8.349E-04
positive regulation of cyclin-dependent protein kinase activity	GO:0045737		2.775E-06	9.54E-04
nucleosome disassembly	GO:0006337		2.775E-06	8.347E-04
positive regulation of gene expression. epigenetic	GO:0045815		3.568E-06	9.538E-04
thymus development	GO:0048538		5.449E-06	1.311E-03
lysogeny	GO:0030069		5.449E-06	1.192E-03

Pawitan_GPL96-GPL97 file

Name	Accession Number	Link	P-val	Corrected P-val
regulation of chromosome organization	GO:0033044		7.678E-08	1.847E-04
positive regulation of cell cycle	GO:0045787		4.524E-07	5.442E-04
meiotic chromosome segregation	GO:0045132		9.918E-07	7.954E-04
establishment of spindle localization	GO:0051293		1.487E-06	8.946E-04
negative regulation of organelle organization	GO:0010639		1.979E-06	9.524E-04
regulation of chromatin assembly or disassembly	GO:0001672		2.082E-06	8.349E-04
positive regulation of cyclin-dependent protein kinase activity	GO:0045737		2.775E-06	9.54E-04
nucleosome disassembly	GO:0006337		2.775E-06	8.347E-04
positive regulation of gene expression. epigenetic	GO:0045815		3.568E-06	9.538E-04
thymus development	GO:0048538		5.449E-06	1.311E-03
lysogeny	GO:0030069		5.449E-06	1.192E-03

Schmidt file

Name	Accession Number	Link	P-val	Corrected P-val
regulation of chromosome organization	GO:0033044		3.08E-07	7.083E-04
positive regulation of cell cycle	GO:0045787		1.889E-06	2.172E-03
positive regulation of gene expression. epigenetic	GO:0045815		4.412E-06	3.383E-03
regulation of chromatin assembly or disassembly	GO:0001672		4.412E-06	2.537E-03
positive regulation of cyclin-dependent protein kinase activity	GO:0045737		6.175E-06	2.841E-03
negative regulation of organelle organization	GO:0010639		7.873E-06	3.018E-03
nucleosome disassembly	GO:0006337		8.231E-06	2.704E-03
thymus development	GO:0048538		1.058E-05	3.042E-03
T cell homeostasis	GO:0043029		1.615E-05	4.128E-03
lysogeny	GO:0030069		1.615E-05	3.715E-03
lymphocyte homeostasis	GO:0002260		2.289E-05	4.787E-03

Sotiriou file

Name	Accession Number	Link	P-val	Corrected P-val
regulation of chromosome organization	GO:0033044		3.08E-07	7.083E-04
positive regulation of cell cycle	GO:0045787		1.889E-06	2.172E-03
positive regulation of gene expression. epigenetic	GO:0045815		4.412E-06	3.383E-03
regulation of chromatin assembly or disassembly	GO:0001672		4.412E-06	2.537E-03
positive regulation of cyclin-dependent protein kinase activity	GO:0045737		6.175E-06	2.841E-03
negative regulation of organelle organization	GO:0010639		7.873E-06	3.018E-03
nucleosome disassembly	GO:0006337		8.231E-06	2.704E-03
thymus development	GO:0048538		1.058E-05	3.042E-03
T cell homeostasis	GO:0043029		1.615E-05	4.128E-03
lysogeny	GO:0030069		1.615E-05	3.715E-03
lymphocyte homeostasis	GO:0002260		2.289E-05	4.787E-03

Wang file

Name	Accession Number	Link	P-val	Corrected P-val
regulation of chromosome organization	GO:0033044		3.08E-07	7.083E-04
positive regulation of cell cycle	GO:0045787		1.889E-06	2.172E-03
positive regulation of gene expression. epigenetic	GO:0045815		4.412E-06	3.383E-03
regulation of chromatin assembly or disassembly	GO:0001672		4.412E-06	2.537E-03
positive regulation of cyclin-dependent protein kinase activity	GO:0045737		6.175E-06	2.841E-03
negative regulation of organelle organization	GO:0010639		7.873E-06	3.018E-03
nucleosome disassembly	GO:0006337		8.231E-06	2.704E-03
thymus development	GO:0048538		1.058E-05	3.042E-03
T cell homeostasis	GO:0043029		1.615E-05	4.128E-03
lysogeny	GO:0030069		1.615E-05	3.715E-03
lymphocyte homeostasis	GO:0002260		2.289E-05	4.787E-03

Zhang file

Name	Accession Number	Link	P-val	Corrected P-val
regulation of chromosome organization	GO:0033044		3.08E-07	7.083E-04
positive regulation of cell cycle	GO:0045787		1.889E-06	2.172E-03
positive regulation of gene expression. epigenetic	GO:0045815		4.412E-06	3.383E-03
regulation of chromatin assembly or disassembly	GO:0001672		4.412E-06	2.537E-03
positive regulation of cyclin-dependent protein kinase activity	GO:0045737		6.175E-06	2.841E-03
negative regulation of organelle organization	GO:0010639		7.873E-06	3.018E-03
nucleosome disassembly	GO:0006337		8.231E-06	2.704E-03
thymus development	GO:0048538		1.058E-05	3.042E-03
T cell homeostasis	GO:0043029		1.615E-05	4.128E-03
lysogeny	GO:0030069		1.615E-05	3.715E-03
lymphocyte homeostasis	GO:0002260		2.289E-05	4.787E-03