Study run-b1

Study informations

127 subnetworks in total page | file

236 genes associated page | file

Enriched GO terms page

General informations

General Index page

Study Index page

Subnetwork 29966-4-real

score

Dataset	Score	P-val 1	P-val 2	P-val 3
Desmedt	0.2062	1.079e-02	3.587e-03	6.188e-02
IPC-NIBC-129	0.2100	3.348e-02	2.532e-02	1.630e-01
Ivshina_GPL96-GPL97	0.2432	2.635e-02	1.897e-02	2.780e-01
Loi_GPL570	0.3043	1.456e-01	1.768e-01	4.894e-01
Loi_GPL96-GPL97	0.1408	2.403e-03	7.110e-04	2.072e-02
Pawitan_GPL96-GPL97	0.2396	1.644e-01	1.029e-01	6.567e-01
Schmidt	0.1816	8.480e-03	9.241e-03	6.228e-02
Sotiriou	0.3380	1.633e-01	8.417e-02	7.282e-01
Wang	0.1936	5.333e-02	3.806e-02	1.893e-01
Zhang	0.2084	2.958e-02	1.715e-02	1.115e-01

Expression data for subnetwork 29966-4-real in each dataset

Desmedt | IPC-NIBC-129 | Ivshina_GPL96-GPL97 | Loi_GPL570 | Loi_GPL96-GPL97 | Pawitan_GPL96-GPL97 | Schmidt | Sotiriou | Wang | Zhang |

Subnetwork structure for each dataset

Desmedt IPC-NIBC-129 Ivshina_GPL96-GPL97 Loi_GPL570 Loi_GPL96-GPL97 Pawitan_GPL96-GPL97 Schmidt Sotiriou Wang Zhang

Desmedt

Score for each gene in subnetwork 29966-4-real in each dataset

Gene Symbol	Links	Frequency	Frequency Rank	Subnetwork score rank	Global rank	Desmedt	IPC-NIBC-129	Ivshina_GPL96-GPL97	Loi_GPL570	Loi_GPL96-GPL97	Pawitan_GPL96-GPL97	Schmidt	Sotiriou	Wang	Zhang
calm1		16	10	35	19	0.038	0.023	0.171	0.277	0.113	0.007	0.171	0.112	0.087	0.162
pcp4		5	20	35	25	0.022	0.163	0.112	0.140	0.114	-0.002	0.096	0.117	0.104	0.109
mybl2		5	20	92	63	0.162	0.237	0.166	0.079	0.124	0.275	0.202	0.182	0.120	0.074
strn3		1	90	132	137	0.084	0.042	0.062	0.267	0.076	-0.048	-0.010	0.103	0.167	0.030
hmmr		10	14	35	23	0.112	0.310	0.147	0.127	0.145	0.221	0.179	0.233	0.227	0.144
ccnd1		97	2	8	2	0.127	-0.183	0.062	0.190	0.157	0.105	-0.107	0.174	0.106	0.144

GO Enrichment output for subnetwork 29966-4-real in each dataset

Desmedt file

Name	Accession Number	Link	P-val	Corrected P-val
positive regulation of cyclin-dependent protein kinase activity	GO:0045737		1.248E-05	0.02869902
cellular response to unfolded protein	GO:0034620		7.101E-05	0.08166013
response to endoplasmic reticulum stress	GO:0034976		1.24E-04	0.09505239
ER-nuclear signaling pathway	GO:0006984		1.492E-04	0.08580805
fat cell differentiation	GO:0045444		1.627E-04	0.07485276
response to calcium ion	GO:0051592		4.565E-04	0.17499778
G1/S transition of mitotic cell cycle	GO:0000082		5.278E-04	0.17341346
positive regulation of cell cycle	GO:0045787		5.781E-04	0.1662038
response to UV	GO:0009411		6.041E-04	0.15438137
regulation of cyclin-dependent protein kinase activity	GO:0000079		7.425E-04	0.1707709
positive regulation of protein amino acid phosphorylation	GO:0001934		1.167E-03	0.24401646

IPC-NIBC-129 file

Name	Accession Number	Link	P-val	Corrected P-val
positive regulation of cyclin-dependent protein kinase activity	GO:0045737		6.77E-06	0.01653866
cellular response to unfolded protein	GO:0034620		4.577E-05	0.05591161
response to endoplasmic reticulum stress	GO:0034976		7.815E-05	0.06364417
fat cell differentiation	GO:0045444		9.085E-05	0.05548399
ER-nuclear signaling pathway	GO:0006984		9.755E-05	0.04766083
G1/S transition of mitotic cell cycle	GO:0000082		2.474E-04	0.10073489
positive regulation of cell cycle	GO:0045787		2.695E-04	0.09404622
response to calcium ion	GO:0051592		2.809E-04	0.08576644
response to UV	GO:0009411		3.54E-04	0.09609537
regulation of cyclin-dependent protein kinase activity	GO:0000079		3.802E-04	0.0928947
positive regulation of protein amino acid phosphorylation	GO:0001934		6.402E-04	0.14219233

Ivshina_GPL96-GPL97 file

Name	Accession Number	Link	P-val	Corrected P-val
positive regulation of cyclin-dependent protein kinase activity	GO:0045737		7.395E-06	0.01779296
cellular response to unfolded protein	GO:0034620		4.501E-05	0.05414716
response to endoplasmic reticulum stress	GO:0034976		7.882E-05	0.06321238
fat cell differentiation	GO:0045444		9.216E-05	0.05543449
ER-nuclear signaling pathway	GO:0006984		9.922E-05	0.04774415
G1/S transition of mitotic cell cycle	GO:0000082		2.702E-04	0.10833418
response to calcium ion	GO:0051592		2.821E-04	0.09695485
positive regulation of cell cycle	GO:0045787		2.943E-04	0.08849657
response to UV	GO:0009411		3.589E-04	0.09594921
regulation of cyclin-dependent protein kinase activity	GO:0000079		4.152E-04	0.09989173
positive regulation of protein amino acid phosphorylation	GO:0001934		6.618E-04	0.14475956

Loi_GPL570 file

Name	Accession Number	Link	P-val	Corrected P-val
positive regulation of cyclin-dependent protein kinase activity	GO:0045737		6.77E-06	0.01653866
cellular response to unfolded protein	GO:0034620		4.577E-05	0.05591161
response to endoplasmic reticulum stress	GO:0034976		7.815E-05	0.06364417
fat cell differentiation	GO:0045444		9.085E-05	0.05548399
ER-nuclear signaling pathway	GO:0006984		9.755E-05	0.04766083
G1/S transition of mitotic cell cycle	GO:0000082		2.474E-04	0.10073489
positive regulation of cell cycle	GO:0045787		2.695E-04	0.09404622
response to calcium ion	GO:0051592		2.809E-04	0.08576644
response to UV	GO:0009411		3.54E-04	0.09609537
regulation of cyclin-dependent protein kinase activity	GO:0000079		3.802E-04	0.0928947
positive regulation of protein amino acid phosphorylation	GO:0001934		6.402E-04	0.14219233

Loi_GPL96-GPL97 file

Name	Accession Number	Link	P-val	Corrected P-val
positive regulation of cyclin-dependent protein kinase activity	GO:0045737		7.395E-06	0.01779296
cellular response to unfolded protein	GO:0034620		4.501E-05	0.05414716
response to endoplasmic reticulum stress	GO:0034976		7.882E-05	0.06321238
fat cell differentiation	GO:0045444		9.216E-05	0.05543449
ER-nuclear signaling pathway	GO:0006984		9.922E-05	0.04774415
G1/S transition of mitotic cell cycle	GO:0000082		2.702E-04	0.10833418
response to calcium ion	GO:0051592		2.821E-04	0.09695485
positive regulation of cell cycle	GO:0045787		2.943E-04	0.08849657
response to UV	GO:0009411		3.589E-04	0.09594921
regulation of cyclin-dependent protein kinase activity	GO:0000079		4.152E-04	0.09989173
positive regulation of protein amino acid phosphorylation	GO:0001934		6.618E-04	0.14475956

Pawitan_GPL96-GPL97 file

Name	Accession Number	Link	P-val	Corrected P-val
positive regulation of cyclin-dependent protein kinase activity	GO:0045737		7.395E-06	0.01779296
cellular response to unfolded protein	GO:0034620		4.501E-05	0.05414716
response to endoplasmic reticulum stress	GO:0034976		7.882E-05	0.06321238
fat cell differentiation	GO:0045444		9.216E-05	0.05543449
ER-nuclear signaling pathway	GO:0006984		9.922E-05	0.04774415
G1/S transition of mitotic cell cycle	GO:0000082		2.702E-04	0.10833418
response to calcium ion	GO:0051592		2.821E-04	0.09695485
positive regulation of cell cycle	GO:0045787		2.943E-04	0.08849657
response to UV	GO:0009411		3.589E-04	0.09594921
regulation of cyclin-dependent protein kinase activity	GO:0000079		4.152E-04	0.09989173
positive regulation of protein amino acid phosphorylation	GO:0001934		6.618E-04	0.14475956

Schmidt file

Name	Accession Number	Link	P-val	Corrected P-val
positive regulation of cyclin-dependent protein kinase activity	GO:0045737		1.248E-05	0.02869902
cellular response to unfolded protein	GO:0034620		7.101E-05	0.08166013
response to endoplasmic reticulum stress	GO:0034976		1.24E-04	0.09505239
ER-nuclear signaling pathway	GO:0006984		1.492E-04	0.08580805
fat cell differentiation	GO:0045444		1.627E-04	0.07485276
response to calcium ion	GO:0051592		4.565E-04	0.17499778
G1/S transition of mitotic cell cycle	GO:0000082		5.278E-04	0.17341346
positive regulation of cell cycle	GO:0045787		5.781E-04	0.1662038
response to UV	GO:0009411		6.041E-04	0.15438137
regulation of cyclin-dependent protein kinase activity	GO:0000079		7.425E-04	0.1707709
positive regulation of protein amino acid phosphorylation	GO:0001934		1.167E-03	0.24401646

Sotiriou file

Name	Accession Number	Link	P-val	Corrected P-val
positive regulation of cyclin-dependent protein kinase activity	GO:0045737		1.248E-05	0.02869902
cellular response to unfolded protein	GO:0034620		7.101E-05	0.08166013
response to endoplasmic reticulum stress	GO:0034976		1.24E-04	0.09505239
ER-nuclear signaling pathway	GO:0006984		1.492E-04	0.08580805
fat cell differentiation	GO:0045444		1.627E-04	0.07485276
response to calcium ion	GO:0051592		4.565E-04	0.17499778
G1/S transition of mitotic cell cycle	GO:0000082		5.278E-04	0.17341346
positive regulation of cell cycle	GO:0045787		5.781E-04	0.1662038
response to UV	GO:0009411		6.041E-04	0.15438137
regulation of cyclin-dependent protein kinase activity	GO:0000079		7.425E-04	0.1707709
positive regulation of protein amino acid phosphorylation	GO:0001934		1.167E-03	0.24401646

Wang file

Name	Accession Number	Link	P-val	Corrected P-val
positive regulation of cyclin-dependent protein kinase activity	GO:0045737		1.248E-05	0.02869902
cellular response to unfolded protein	GO:0034620		7.101E-05	0.08166013
response to endoplasmic reticulum stress	GO:0034976		1.24E-04	0.09505239
ER-nuclear signaling pathway	GO:0006984		1.492E-04	0.08580805
fat cell differentiation	GO:0045444		1.627E-04	0.07485276
response to calcium ion	GO:0051592		4.565E-04	0.17499778
G1/S transition of mitotic cell cycle	GO:0000082		5.278E-04	0.17341346
positive regulation of cell cycle	GO:0045787		5.781E-04	0.1662038
response to UV	GO:0009411		6.041E-04	0.15438137
regulation of cyclin-dependent protein kinase activity	GO:0000079		7.425E-04	0.1707709
positive regulation of protein amino acid phosphorylation	GO:0001934		1.167E-03	0.24401646

Zhang file

Name	Accession Number	Link	P-val	Corrected P-val
positive regulation of cyclin-dependent protein kinase activity	GO:0045737		1.248E-05	0.02869902
cellular response to unfolded protein	GO:0034620		7.101E-05	0.08166013
response to endoplasmic reticulum stress	GO:0034976		1.24E-04	0.09505239
ER-nuclear signaling pathway	GO:0006984		1.492E-04	0.08580805
fat cell differentiation	GO:0045444		1.627E-04	0.07485276
response to calcium ion	GO:0051592		4.565E-04	0.17499778
G1/S transition of mitotic cell cycle	GO:0000082		5.278E-04	0.17341346
positive regulation of cell cycle	GO:0045787		5.781E-04	0.1662038
response to UV	GO:0009411		6.041E-04	0.15438137
regulation of cyclin-dependent protein kinase activity	GO:0000079		7.425E-04	0.1707709
positive regulation of protein amino acid phosphorylation	GO:0001934		1.167E-03	0.24401646