Study run-b1
Study informations
127 subnetworks in total page | file
236 genes associated page | file
Enriched GO terms page
General informations
General Index page
Study Index page
Subnetwork 2189-2-real
score
| Dataset | Score | P-val 1 | P-val 2 | P-val 3 |
|---|
| Desmedt | 0.1933 | 1.191e-02 | 4.105e-03 | 6.692e-02 |
|---|
| IPC-NIBC-129 | 0.2379 | 7.191e-02 | 6.052e-02 | 3.308e-01 |
|---|
| Ivshina_GPL96-GPL97 | 0.2384 | 1.513e-02 | 9.906e-03 | 1.782e-01 |
|---|
| Loi_GPL570 | 0.2442 | 1.162e-01 | 1.438e-01 | 4.211e-01 |
|---|
| Loi_GPL96-GPL97 | 0.1763 | 4.058e-03 | 1.452e-03 | 4.309e-02 |
|---|
| Pawitan_GPL96-GPL97 | 0.3379 | 4.393e-02 | 1.895e-02 | 2.802e-01 |
|---|
| Schmidt | 0.1990 | 1.165e-02 | 1.260e-02 | 8.329e-02 |
|---|
| Sotiriou | 0.3183 | 9.328e-02 | 3.790e-02 | 5.456e-01 |
|---|
| Wang | 0.1495 | 1.131e-01 | 9.807e-02 | 3.291e-01 |
|---|
| Zhang | 0.3298 | 5.673e-03 | 2.703e-03 | 2.932e-02 |
|---|
Expression data for subnetwork 2189-2-real in each dataset
Desmedt |
IPC-NIBC-129 |
Ivshina_GPL96-GPL97 |
Loi_GPL570 |
Loi_GPL96-GPL97 |
Pawitan_GPL96-GPL97 |
Schmidt |
Sotiriou |
Wang |
Zhang |
Subnetwork structure for each dataset
- Desmedt
Score for each gene in subnetwork 2189-2-real in each dataset
| Gene Symbol | Links | Frequency | Frequency Rank | Subnetwork score rank | Global rank |
Desmedt | IPC-NIBC-129 | Ivshina_GPL96-GPL97 | Loi_GPL570 | Loi_GPL96-GPL97 | Pawitan_GPL96-GPL97 | Schmidt | Sotiriou | Wang | Zhang |
|---|
| cdkn3 |   | 18 | 9 | 26 | 16 | 0.114 | 0.269 | 0.199 | 0.136 | 0.193 | 0.323 | 0.186 | 0.198 | 0.134 | 0.271 |
|---|
| tsc1 | | 31 | 5 | 26 | 15 | 0.049 | 0.012 | -0.055 | 0.072 | 0.055 | -0.196 | 0.006 | 0.010 | 0.043 | -0.007 |
|---|
| cdc2 | | 99 | 1 | 1 | 1 | 0.073 | 0.247 | 0.206 | 0.172 | 0.247 | 0.282 | 0.226 | 0.221 | 0.067 | 0.297 |
|---|
| stmn2 | | 19 | 8 | 32 | 18 | 0.057 | 0.106 | 0.005 | 0.052 | 0.110 | 0.006 | 0.034 | 0.103 | 0.075 | 0.113 |
|---|
| fancg | | 1 | 90 | 41 | 54 | 0.081 | 0.214 | 0.140 | 0.118 | 0.100 | 0.215 | 0.173 | 0.118 | 0.162 | 0.070 |
|---|
| ccnd1 | | 97 | 2 | 8 | 2 | 0.127 | -0.183 | 0.062 | 0.190 | 0.157 | 0.105 | -0.107 | 0.174 | 0.106 | 0.144 |
|---|
GO Enrichment output for subnetwork 2189-2-real in each dataset
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| cellular response to unfolded protein | GO:0034620 |  | 5.266E-08 | 1.211E-04 |
|---|
| response to endoplasmic reticulum stress | GO:0034976 | | 1.249E-07 | 1.436E-04 |
|---|
| ER-nuclear signaling pathway | GO:0006984 | | 1.662E-07 | 1.274E-04 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 1.152E-06 | 6.626E-04 |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 1.941E-06 | 8.927E-04 |
|---|
| negative regulation of protein ubiquitination | GO:0031397 | | 2.354E-06 | 9.024E-04 |
|---|
| positive regulation of Rho GTPase activity | GO:0032321 | | 2.354E-06 | 7.735E-04 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 4.941E-06 | 1.421E-03 |
|---|
| regulation of focal adhesion formation | GO:0051893 | | 4.941E-06 | 1.263E-03 |
|---|
| response to unfolded protein | GO:0006986 | | 6.509E-06 | 1.497E-03 |
|---|
| positive regulation of Ras GTPase activity | GO:0032320 | | 6.586E-06 | 1.377E-03 |
|---|
IPC-NIBC-129 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| cellular response to unfolded protein | GO:0034620 | | 2.506E-08 | 6.123E-05 |
|---|
| response to endoplasmic reticulum stress | GO:0034976 | | 5.71E-08 | 6.975E-05 |
|---|
| ER-nuclear signaling pathway | GO:0006984 | | 8.021E-08 | 6.532E-05 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 3.323E-07 | 2.029E-04 |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 6.393E-07 | 3.123E-04 |
|---|
| negative regulation of protein ubiquitination | GO:0031397 | | 8.703E-07 | 3.543E-04 |
|---|
| retrograde protein transport. ER to cytosol | GO:0030970 | | 8.703E-07 | 3.037E-04 |
|---|
| activation of Ras GTPase activity | GO:0032856 | | 1.305E-06 | 3.986E-04 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 2.436E-06 | 6.611E-04 |
|---|
| regulation of focal adhesion formation | GO:0051893 | | 2.436E-06 | 5.95E-04 |
|---|
| response to unfolded protein | GO:0006986 | | 2.552E-06 | 5.669E-04 |
|---|
Ivshina_GPL96-GPL97 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| cellular response to unfolded protein | GO:0034620 | | 2.547E-08 | 6.128E-05 |
|---|
| response to endoplasmic reticulum stress | GO:0034976 | | 6.04E-08 | 7.266E-05 |
|---|
| ER-nuclear signaling pathway | GO:0006984 | | 8.598E-08 | 6.895E-05 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 3.972E-07 | 2.389E-04 |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 7.641E-07 | 3.677E-04 |
|---|
| negative regulation of protein ubiquitination | GO:0031397 | | 9.918E-07 | 3.977E-04 |
|---|
| activation of Ras GTPase activity | GO:0032856 | | 9.918E-07 | 3.409E-04 |
|---|
| retrograde protein transport. ER to cytosol | GO:0030970 | | 9.918E-07 | 2.983E-04 |
|---|
| response to unfolded protein | GO:0006986 | | 2.567E-06 | 6.861E-04 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 2.775E-06 | 6.678E-04 |
|---|
| regulation of focal adhesion formation | GO:0051893 | | 2.775E-06 | 6.071E-04 |
|---|
Loi_GPL570 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| cellular response to unfolded protein | GO:0034620 | | 2.506E-08 | 6.123E-05 |
|---|
| response to endoplasmic reticulum stress | GO:0034976 | | 5.71E-08 | 6.975E-05 |
|---|
| ER-nuclear signaling pathway | GO:0006984 | | 8.021E-08 | 6.532E-05 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 3.323E-07 | 2.029E-04 |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 6.393E-07 | 3.123E-04 |
|---|
| negative regulation of protein ubiquitination | GO:0031397 | | 8.703E-07 | 3.543E-04 |
|---|
| retrograde protein transport. ER to cytosol | GO:0030970 | | 8.703E-07 | 3.037E-04 |
|---|
| activation of Ras GTPase activity | GO:0032856 | | 1.305E-06 | 3.986E-04 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 2.436E-06 | 6.611E-04 |
|---|
| regulation of focal adhesion formation | GO:0051893 | | 2.436E-06 | 5.95E-04 |
|---|
| response to unfolded protein | GO:0006986 | | 2.552E-06 | 5.669E-04 |
|---|
Loi_GPL96-GPL97 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| cellular response to unfolded protein | GO:0034620 | | 2.547E-08 | 6.128E-05 |
|---|
| response to endoplasmic reticulum stress | GO:0034976 | | 6.04E-08 | 7.266E-05 |
|---|
| ER-nuclear signaling pathway | GO:0006984 | | 8.598E-08 | 6.895E-05 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 3.972E-07 | 2.389E-04 |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 7.641E-07 | 3.677E-04 |
|---|
| negative regulation of protein ubiquitination | GO:0031397 | | 9.918E-07 | 3.977E-04 |
|---|
| activation of Ras GTPase activity | GO:0032856 | | 9.918E-07 | 3.409E-04 |
|---|
| retrograde protein transport. ER to cytosol | GO:0030970 | | 9.918E-07 | 2.983E-04 |
|---|
| response to unfolded protein | GO:0006986 | | 2.567E-06 | 6.861E-04 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 2.775E-06 | 6.678E-04 |
|---|
| regulation of focal adhesion formation | GO:0051893 | | 2.775E-06 | 6.071E-04 |
|---|
Pawitan_GPL96-GPL97 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| cellular response to unfolded protein | GO:0034620 | | 2.547E-08 | 6.128E-05 |
|---|
| response to endoplasmic reticulum stress | GO:0034976 | | 6.04E-08 | 7.266E-05 |
|---|
| ER-nuclear signaling pathway | GO:0006984 | | 8.598E-08 | 6.895E-05 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 3.972E-07 | 2.389E-04 |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 7.641E-07 | 3.677E-04 |
|---|
| negative regulation of protein ubiquitination | GO:0031397 | | 9.918E-07 | 3.977E-04 |
|---|
| activation of Ras GTPase activity | GO:0032856 | | 9.918E-07 | 3.409E-04 |
|---|
| retrograde protein transport. ER to cytosol | GO:0030970 | | 9.918E-07 | 2.983E-04 |
|---|
| response to unfolded protein | GO:0006986 | | 2.567E-06 | 6.861E-04 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 2.775E-06 | 6.678E-04 |
|---|
| regulation of focal adhesion formation | GO:0051893 | | 2.775E-06 | 6.071E-04 |
|---|
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| cellular response to unfolded protein | GO:0034620 | | 5.266E-08 | 1.211E-04 |
|---|
| response to endoplasmic reticulum stress | GO:0034976 | | 1.249E-07 | 1.436E-04 |
|---|
| ER-nuclear signaling pathway | GO:0006984 | | 1.662E-07 | 1.274E-04 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 1.152E-06 | 6.626E-04 |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 1.941E-06 | 8.927E-04 |
|---|
| negative regulation of protein ubiquitination | GO:0031397 | | 2.354E-06 | 9.024E-04 |
|---|
| positive regulation of Rho GTPase activity | GO:0032321 | | 2.354E-06 | 7.735E-04 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 4.941E-06 | 1.421E-03 |
|---|
| regulation of focal adhesion formation | GO:0051893 | | 4.941E-06 | 1.263E-03 |
|---|
| response to unfolded protein | GO:0006986 | | 6.509E-06 | 1.497E-03 |
|---|
| positive regulation of Ras GTPase activity | GO:0032320 | | 6.586E-06 | 1.377E-03 |
|---|
Sotiriou file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| cellular response to unfolded protein | GO:0034620 | | 5.266E-08 | 1.211E-04 |
|---|
| response to endoplasmic reticulum stress | GO:0034976 | | 1.249E-07 | 1.436E-04 |
|---|
| ER-nuclear signaling pathway | GO:0006984 | | 1.662E-07 | 1.274E-04 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 1.152E-06 | 6.626E-04 |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 1.941E-06 | 8.927E-04 |
|---|
| negative regulation of protein ubiquitination | GO:0031397 | | 2.354E-06 | 9.024E-04 |
|---|
| positive regulation of Rho GTPase activity | GO:0032321 | | 2.354E-06 | 7.735E-04 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 4.941E-06 | 1.421E-03 |
|---|
| regulation of focal adhesion formation | GO:0051893 | | 4.941E-06 | 1.263E-03 |
|---|
| response to unfolded protein | GO:0006986 | | 6.509E-06 | 1.497E-03 |
|---|
| positive regulation of Ras GTPase activity | GO:0032320 | | 6.586E-06 | 1.377E-03 |
|---|
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| cellular response to unfolded protein | GO:0034620 | | 5.266E-08 | 1.211E-04 |
|---|
| response to endoplasmic reticulum stress | GO:0034976 | | 1.249E-07 | 1.436E-04 |
|---|
| ER-nuclear signaling pathway | GO:0006984 | | 1.662E-07 | 1.274E-04 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 1.152E-06 | 6.626E-04 |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 1.941E-06 | 8.927E-04 |
|---|
| negative regulation of protein ubiquitination | GO:0031397 | | 2.354E-06 | 9.024E-04 |
|---|
| positive regulation of Rho GTPase activity | GO:0032321 | | 2.354E-06 | 7.735E-04 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 4.941E-06 | 1.421E-03 |
|---|
| regulation of focal adhesion formation | GO:0051893 | | 4.941E-06 | 1.263E-03 |
|---|
| response to unfolded protein | GO:0006986 | | 6.509E-06 | 1.497E-03 |
|---|
| positive regulation of Ras GTPase activity | GO:0032320 | | 6.586E-06 | 1.377E-03 |
|---|
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| cellular response to unfolded protein | GO:0034620 | | 5.266E-08 | 1.211E-04 |
|---|
| response to endoplasmic reticulum stress | GO:0034976 | | 1.249E-07 | 1.436E-04 |
|---|
| ER-nuclear signaling pathway | GO:0006984 | | 1.662E-07 | 1.274E-04 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 1.152E-06 | 6.626E-04 |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 1.941E-06 | 8.927E-04 |
|---|
| negative regulation of protein ubiquitination | GO:0031397 | | 2.354E-06 | 9.024E-04 |
|---|
| positive regulation of Rho GTPase activity | GO:0032321 | | 2.354E-06 | 7.735E-04 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 4.941E-06 | 1.421E-03 |
|---|
| regulation of focal adhesion formation | GO:0051893 | | 4.941E-06 | 1.263E-03 |
|---|
| response to unfolded protein | GO:0006986 | | 6.509E-06 | 1.497E-03 |
|---|
| positive regulation of Ras GTPase activity | GO:0032320 | | 6.586E-06 | 1.377E-03 |
|---|
