Study run-b1
Study informations
127 subnetworks in total page | file
236 genes associated page | file
Enriched GO terms page
General informations
General Index page
Study Index page
Subnetwork 1978-2-real
score
| Dataset | Score | P-val 1 | P-val 2 | P-val 3 |
|---|
| Desmedt | 0.1686 | 1.685e-02 | 6.583e-03 | 8.788e-02 |
|---|
| IPC-NIBC-129 | 0.1913 | 8.118e-02 | 6.945e-02 | 3.660e-01 |
|---|
| Ivshina_GPL96-GPL97 | 0.2219 | 3.802e-02 | 2.910e-02 | 3.633e-01 |
|---|
| Loi_GPL570 | 0.2346 | 2.104e-01 | 2.476e-01 | 6.128e-01 |
|---|
| Loi_GPL96-GPL97 | 0.2226 | 1.085e-02 | 5.482e-03 | 1.459e-01 |
|---|
| Pawitan_GPL96-GPL97 | 0.3307 | 7.794e-02 | 3.954e-02 | 4.223e-01 |
|---|
| Schmidt | 0.1528 | 3.471e-02 | 3.662e-02 | 2.123e-01 |
|---|
| Sotiriou | 0.2494 | 4.400e-02 | 1.294e-02 | 3.308e-01 |
|---|
| Wang | 0.1690 | 8.135e-02 | 6.498e-02 | 2.595e-01 |
|---|
| Zhang | 0.2778 | 6.411e-03 | 3.098e-03 | 3.244e-02 |
|---|
Expression data for subnetwork 1978-2-real in each dataset
Desmedt |
IPC-NIBC-129 |
Ivshina_GPL96-GPL97 |
Loi_GPL570 |
Loi_GPL96-GPL97 |
Pawitan_GPL96-GPL97 |
Schmidt |
Sotiriou |
Wang |
Zhang |
Subnetwork structure for each dataset
- Desmedt
Score for each gene in subnetwork 1978-2-real in each dataset
| Gene Symbol | Links | Frequency | Frequency Rank | Subnetwork score rank | Global rank |
Desmedt | IPC-NIBC-129 | Ivshina_GPL96-GPL97 | Loi_GPL570 | Loi_GPL96-GPL97 | Pawitan_GPL96-GPL97 | Schmidt | Sotiriou | Wang | Zhang |
|---|
| cdkn3 |   | 18 | 9 | 26 | 16 | 0.114 | 0.269 | 0.199 | 0.136 | 0.193 | 0.323 | 0.186 | 0.198 | 0.134 | 0.271 |
|---|
| cdc2 | | 99 | 1 | 1 | 1 | 0.073 | 0.247 | 0.206 | 0.172 | 0.247 | 0.282 | 0.226 | 0.221 | 0.067 | 0.297 |
|---|
| eif4ebp1 | | 1 | 90 | 176 | 182 | 0.158 | 0.203 | 0.132 | 0.139 | 0.104 | 0.252 | 0.031 | 0.042 | 0.104 | 0.029 |
|---|
| rps6kb1 | | 2 | 53 | 83 | 73 | -0.048 | 0.004 | 0.033 | 0.144 | 0.128 | 0.022 | 0.116 | 0.084 | 0.184 | 0.076 |
|---|
| ccnd1 | | 97 | 2 | 8 | 2 | 0.127 | -0.183 | 0.062 | 0.190 | 0.157 | 0.105 | -0.107 | 0.174 | 0.106 | 0.144 |
|---|
GO Enrichment output for subnetwork 1978-2-real in each dataset
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 |  | 1.152E-06 | 2.651E-03 |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 1.941E-06 | 2.232E-03 |
|---|
| negative regulation of translational initiation | GO:0045947 | | 3.53E-06 | 2.707E-03 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 4.941E-06 | 2.841E-03 |
|---|
| interphase of mitotic cell cycle | GO:0051329 | | 9.451E-06 | 4.348E-03 |
|---|
| interphase | GO:0051325 | | 1.013E-05 | 3.883E-03 |
|---|
| cellular response to unfolded protein | GO:0034620 | | 2.817E-05 | 9.255E-03 |
|---|
| negative regulation of translation | GO:0017148 | | 2.817E-05 | 8.098E-03 |
|---|
| response to endoplasmic reticulum stress | GO:0034976 | | 4.923E-05 | 0.01257987 |
|---|
| ER-nuclear signaling pathway | GO:0006984 | | 5.927E-05 | 0.01363289 |
|---|
| fat cell differentiation | GO:0045444 | | 6.464E-05 | 0.01351662 |
|---|
IPC-NIBC-129 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 3.323E-07 | 8.117E-04 |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 6.393E-07 | 7.809E-04 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 2.436E-06 | 1.983E-03 |
|---|
| negative regulation of translational initiation | GO:0045947 | | 2.436E-06 | 1.487E-03 |
|---|
| interphase of mitotic cell cycle | GO:0051329 | | 3.3E-06 | 1.612E-03 |
|---|
| cellular response to unfolded protein | GO:0034620 | | 1.649E-05 | 6.715E-03 |
|---|
| negative regulation of translation | GO:0017148 | | 1.649E-05 | 5.756E-03 |
|---|
| response to endoplasmic reticulum stress | GO:0034976 | | 2.818E-05 | 8.607E-03 |
|---|
| fat cell differentiation | GO:0045444 | | 3.277E-05 | 8.895E-03 |
|---|
| ER-nuclear signaling pathway | GO:0006984 | | 3.519E-05 | 8.597E-03 |
|---|
| positive regulation of cell cycle | GO:0045787 | | 9.746E-05 | 0.02164409 |
|---|
Ivshina_GPL96-GPL97 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 3.972E-07 | 9.555E-04 |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 7.641E-07 | 9.192E-04 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 2.775E-06 | 2.226E-03 |
|---|
| negative regulation of translational initiation | GO:0045947 | | 2.775E-06 | 1.669E-03 |
|---|
| interphase of mitotic cell cycle | GO:0051329 | | 3.59E-06 | 1.728E-03 |
|---|
| interphase | GO:0051325 | | 3.943E-06 | 1.581E-03 |
|---|
| cellular response to unfolded protein | GO:0034620 | | 1.692E-05 | 5.815E-03 |
|---|
| negative regulation of translation | GO:0017148 | | 1.879E-05 | 5.652E-03 |
|---|
| response to endoplasmic reticulum stress | GO:0034976 | | 2.965E-05 | 7.926E-03 |
|---|
| fat cell differentiation | GO:0045444 | | 3.468E-05 | 8.343E-03 |
|---|
| ER-nuclear signaling pathway | GO:0006984 | | 3.734E-05 | 8.166E-03 |
|---|
Loi_GPL570 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 3.323E-07 | 8.117E-04 |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 6.393E-07 | 7.809E-04 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 2.436E-06 | 1.983E-03 |
|---|
| negative regulation of translational initiation | GO:0045947 | | 2.436E-06 | 1.487E-03 |
|---|
| interphase of mitotic cell cycle | GO:0051329 | | 3.3E-06 | 1.612E-03 |
|---|
| cellular response to unfolded protein | GO:0034620 | | 1.649E-05 | 6.715E-03 |
|---|
| negative regulation of translation | GO:0017148 | | 1.649E-05 | 5.756E-03 |
|---|
| response to endoplasmic reticulum stress | GO:0034976 | | 2.818E-05 | 8.607E-03 |
|---|
| fat cell differentiation | GO:0045444 | | 3.277E-05 | 8.895E-03 |
|---|
| ER-nuclear signaling pathway | GO:0006984 | | 3.519E-05 | 8.597E-03 |
|---|
| positive regulation of cell cycle | GO:0045787 | | 9.746E-05 | 0.02164409 |
|---|
Loi_GPL96-GPL97 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 3.972E-07 | 9.555E-04 |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 7.641E-07 | 9.192E-04 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 2.775E-06 | 2.226E-03 |
|---|
| negative regulation of translational initiation | GO:0045947 | | 2.775E-06 | 1.669E-03 |
|---|
| interphase of mitotic cell cycle | GO:0051329 | | 3.59E-06 | 1.728E-03 |
|---|
| interphase | GO:0051325 | | 3.943E-06 | 1.581E-03 |
|---|
| cellular response to unfolded protein | GO:0034620 | | 1.692E-05 | 5.815E-03 |
|---|
| negative regulation of translation | GO:0017148 | | 1.879E-05 | 5.652E-03 |
|---|
| response to endoplasmic reticulum stress | GO:0034976 | | 2.965E-05 | 7.926E-03 |
|---|
| fat cell differentiation | GO:0045444 | | 3.468E-05 | 8.343E-03 |
|---|
| ER-nuclear signaling pathway | GO:0006984 | | 3.734E-05 | 8.166E-03 |
|---|
Pawitan_GPL96-GPL97 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 3.972E-07 | 9.555E-04 |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 7.641E-07 | 9.192E-04 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 2.775E-06 | 2.226E-03 |
|---|
| negative regulation of translational initiation | GO:0045947 | | 2.775E-06 | 1.669E-03 |
|---|
| interphase of mitotic cell cycle | GO:0051329 | | 3.59E-06 | 1.728E-03 |
|---|
| interphase | GO:0051325 | | 3.943E-06 | 1.581E-03 |
|---|
| cellular response to unfolded protein | GO:0034620 | | 1.692E-05 | 5.815E-03 |
|---|
| negative regulation of translation | GO:0017148 | | 1.879E-05 | 5.652E-03 |
|---|
| response to endoplasmic reticulum stress | GO:0034976 | | 2.965E-05 | 7.926E-03 |
|---|
| fat cell differentiation | GO:0045444 | | 3.468E-05 | 8.343E-03 |
|---|
| ER-nuclear signaling pathway | GO:0006984 | | 3.734E-05 | 8.166E-03 |
|---|
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 1.152E-06 | 2.651E-03 |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 1.941E-06 | 2.232E-03 |
|---|
| negative regulation of translational initiation | GO:0045947 | | 3.53E-06 | 2.707E-03 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 4.941E-06 | 2.841E-03 |
|---|
| interphase of mitotic cell cycle | GO:0051329 | | 9.451E-06 | 4.348E-03 |
|---|
| interphase | GO:0051325 | | 1.013E-05 | 3.883E-03 |
|---|
| cellular response to unfolded protein | GO:0034620 | | 2.817E-05 | 9.255E-03 |
|---|
| negative regulation of translation | GO:0017148 | | 2.817E-05 | 8.098E-03 |
|---|
| response to endoplasmic reticulum stress | GO:0034976 | | 4.923E-05 | 0.01257987 |
|---|
| ER-nuclear signaling pathway | GO:0006984 | | 5.927E-05 | 0.01363289 |
|---|
| fat cell differentiation | GO:0045444 | | 6.464E-05 | 0.01351662 |
|---|
Sotiriou file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 1.152E-06 | 2.651E-03 |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 1.941E-06 | 2.232E-03 |
|---|
| negative regulation of translational initiation | GO:0045947 | | 3.53E-06 | 2.707E-03 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 4.941E-06 | 2.841E-03 |
|---|
| interphase of mitotic cell cycle | GO:0051329 | | 9.451E-06 | 4.348E-03 |
|---|
| interphase | GO:0051325 | | 1.013E-05 | 3.883E-03 |
|---|
| cellular response to unfolded protein | GO:0034620 | | 2.817E-05 | 9.255E-03 |
|---|
| negative regulation of translation | GO:0017148 | | 2.817E-05 | 8.098E-03 |
|---|
| response to endoplasmic reticulum stress | GO:0034976 | | 4.923E-05 | 0.01257987 |
|---|
| ER-nuclear signaling pathway | GO:0006984 | | 5.927E-05 | 0.01363289 |
|---|
| fat cell differentiation | GO:0045444 | | 6.464E-05 | 0.01351662 |
|---|
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 1.152E-06 | 2.651E-03 |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 1.941E-06 | 2.232E-03 |
|---|
| negative regulation of translational initiation | GO:0045947 | | 3.53E-06 | 2.707E-03 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 4.941E-06 | 2.841E-03 |
|---|
| interphase of mitotic cell cycle | GO:0051329 | | 9.451E-06 | 4.348E-03 |
|---|
| interphase | GO:0051325 | | 1.013E-05 | 3.883E-03 |
|---|
| cellular response to unfolded protein | GO:0034620 | | 2.817E-05 | 9.255E-03 |
|---|
| negative regulation of translation | GO:0017148 | | 2.817E-05 | 8.098E-03 |
|---|
| response to endoplasmic reticulum stress | GO:0034976 | | 4.923E-05 | 0.01257987 |
|---|
| ER-nuclear signaling pathway | GO:0006984 | | 5.927E-05 | 0.01363289 |
|---|
| fat cell differentiation | GO:0045444 | | 6.464E-05 | 0.01351662 |
|---|
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 1.152E-06 | 2.651E-03 |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 1.941E-06 | 2.232E-03 |
|---|
| negative regulation of translational initiation | GO:0045947 | | 3.53E-06 | 2.707E-03 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 4.941E-06 | 2.841E-03 |
|---|
| interphase of mitotic cell cycle | GO:0051329 | | 9.451E-06 | 4.348E-03 |
|---|
| interphase | GO:0051325 | | 1.013E-05 | 3.883E-03 |
|---|
| cellular response to unfolded protein | GO:0034620 | | 2.817E-05 | 9.255E-03 |
|---|
| negative regulation of translation | GO:0017148 | | 2.817E-05 | 8.098E-03 |
|---|
| response to endoplasmic reticulum stress | GO:0034976 | | 4.923E-05 | 0.01257987 |
|---|
| ER-nuclear signaling pathway | GO:0006984 | | 5.927E-05 | 0.01363289 |
|---|
| fat cell differentiation | GO:0045444 | | 6.464E-05 | 0.01351662 |
|---|
