Study run-b1
Study informations
127 subnetworks in total page | file
236 genes associated page | file
Enriched GO terms page
General informations
General Index page
Study Index page
Subnetwork 1400-1-real
score
| Dataset | Score | P-val 1 | P-val 2 | P-val 3 |
|---|
| Desmedt | 0.1888 | 1.320e-02 | 4.720e-03 | 7.256e-02 |
|---|
| IPC-NIBC-129 | 0.2175 | 7.729e-02 | 6.568e-02 | 3.514e-01 |
|---|
| Ivshina_GPL96-GPL97 | 0.2336 | 2.270e-02 | 1.594e-02 | 2.479e-01 |
|---|
| Loi_GPL570 | 0.2385 | 1.353e-01 | 1.653e-01 | 4.665e-01 |
|---|
| Loi_GPL96-GPL97 | 0.1842 | 4.868e-03 | 1.860e-03 | 5.488e-02 |
|---|
| Pawitan_GPL96-GPL97 | 0.3413 | 6.505e-02 | 3.136e-02 | 3.732e-01 |
|---|
| Schmidt | 0.1873 | 1.010e-02 | 1.096e-02 | 7.314e-02 |
|---|
| Sotiriou | 0.3272 | 8.207e-02 | 3.156e-02 | 5.052e-01 |
|---|
| Wang | 0.1422 | 1.278e-01 | 1.142e-01 | 3.587e-01 |
|---|
| Zhang | 0.2943 | 5.355e-03 | 2.535e-03 | 2.795e-02 |
|---|
Expression data for subnetwork 1400-1-real in each dataset
Desmedt |
IPC-NIBC-129 |
Ivshina_GPL96-GPL97 |
Loi_GPL570 |
Loi_GPL96-GPL97 |
Pawitan_GPL96-GPL97 |
Schmidt |
Sotiriou |
Wang |
Zhang |
Subnetwork structure for each dataset
- Desmedt
Score for each gene in subnetwork 1400-1-real in each dataset
| Gene Symbol | Links | Frequency | Frequency Rank | Subnetwork score rank | Global rank |
Desmedt | IPC-NIBC-129 | Ivshina_GPL96-GPL97 | Loi_GPL570 | Loi_GPL96-GPL97 | Pawitan_GPL96-GPL97 | Schmidt | Sotiriou | Wang | Zhang |
|---|
| tsc1 |   | 31 | 5 | 26 | 15 | 0.049 | 0.012 | -0.055 | 0.072 | 0.055 | -0.196 | 0.006 | 0.010 | 0.043 | -0.007 |
|---|
| crmp1 | | 1 | 90 | 86 | 97 | 0.065 | 0.155 | -0.056 | 0.060 | 0.087 | 0.009 | 0.138 | 0.086 | -0.043 | 0.030 |
|---|
| cdc2 | | 99 | 1 | 1 | 1 | 0.073 | 0.247 | 0.206 | 0.172 | 0.247 | 0.282 | 0.226 | 0.221 | 0.067 | 0.297 |
|---|
| tk1 | | 2 | 53 | 45 | 43 | 0.109 | 0.149 | 0.190 | -0.017 | 0.131 | 0.257 | 0.204 | 0.142 | 0.064 | 0.164 |
|---|
| stmn2 | | 19 | 8 | 32 | 18 | 0.057 | 0.106 | 0.005 | 0.052 | 0.110 | 0.006 | 0.034 | 0.103 | 0.075 | 0.113 |
|---|
| ccnb1 | | 33 | 4 | 68 | 40 | 0.082 | 0.246 | 0.212 | 0.224 | 0.256 | 0.351 | 0.129 | 0.249 | 0.152 | 0.167 |
|---|
| ccnd1 | | 97 | 2 | 8 | 2 | 0.127 | -0.183 | 0.062 | 0.190 | 0.157 | 0.105 | -0.107 | 0.174 | 0.106 | 0.144 |
|---|
GO Enrichment output for subnetwork 1400-1-real in each dataset
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| negative regulation of protein ubiquitination | GO:0031397 |  | 2.942E-06 | 6.767E-03 |
|---|
| positive regulation of Rho GTPase activity | GO:0032321 | | 2.942E-06 | 3.384E-03 |
|---|
| anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process | GO:0031145 | | 4.767E-06 | 3.655E-03 |
|---|
| positive regulation of ubiquitin-protein ligase activity during mitotic cell cycle | GO:0051437 | | 5.008E-06 | 2.88E-03 |
|---|
| positive regulation of ubiquitin-protein ligase activity | GO:0051443 | | 5.779E-06 | 2.658E-03 |
|---|
| regulation of ubiquitin-protein ligase activity during mitotic cell cycle | GO:0051439 | | 5.779E-06 | 2.215E-03 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 6.175E-06 | 2.029E-03 |
|---|
| regulation of focal adhesion formation | GO:0051893 | | 6.175E-06 | 1.775E-03 |
|---|
| positive regulation of ligase activity | GO:0051351 | | 6.923E-06 | 1.769E-03 |
|---|
| regulation of ubiquitin-protein ligase activity | GO:0051438 | | 7.548E-06 | 1.736E-03 |
|---|
| positive regulation of Ras GTPase activity | GO:0032320 | | 8.231E-06 | 1.721E-03 |
|---|
IPC-NIBC-129 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| negative regulation of protein ubiquitination | GO:0031397 | | 1.234E-06 | 3.015E-03 |
|---|
| activation of Ras GTPase activity | GO:0032856 | | 1.851E-06 | 2.261E-03 |
|---|
| anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process | GO:0031145 | | 1.889E-06 | 1.538E-03 |
|---|
| positive regulation of ubiquitin-protein ligase activity during mitotic cell cycle | GO:0051437 | | 1.975E-06 | 1.206E-03 |
|---|
| positive regulation of ubiquitin-protein ligase activity | GO:0051443 | | 2.246E-06 | 1.098E-03 |
|---|
| regulation of ubiquitin-protein ligase activity during mitotic cell cycle | GO:0051439 | | 2.246E-06 | 9.146E-04 |
|---|
| positive regulation of ligase activity | GO:0051351 | | 2.752E-06 | 9.605E-04 |
|---|
| regulation of ubiquitin-protein ligase activity | GO:0051438 | | 2.974E-06 | 9.082E-04 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 3.453E-06 | 9.374E-04 |
|---|
| regulation of focal adhesion formation | GO:0051893 | | 3.453E-06 | 8.436E-04 |
|---|
| regulation of ligase activity | GO:0051340 | | 3.58E-06 | 7.95E-04 |
|---|
Ivshina_GPL96-GPL97 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| negative regulation of protein ubiquitination | GO:0031397 | | 1.454E-06 | 3.499E-03 |
|---|
| activation of Ras GTPase activity | GO:0032856 | | 1.454E-06 | 1.75E-03 |
|---|
| anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process | GO:0031145 | | 2.387E-06 | 1.914E-03 |
|---|
| positive regulation of ubiquitin-protein ligase activity during mitotic cell cycle | GO:0051437 | | 2.495E-06 | 1.501E-03 |
|---|
| positive regulation of ubiquitin-protein ligase activity | GO:0051443 | | 2.838E-06 | 1.366E-03 |
|---|
| regulation of ubiquitin-protein ligase activity during mitotic cell cycle | GO:0051439 | | 2.838E-06 | 1.138E-03 |
|---|
| positive regulation of ligase activity | GO:0051351 | | 3.477E-06 | 1.195E-03 |
|---|
| regulation of ubiquitin-protein ligase activity | GO:0051438 | | 3.757E-06 | 1.13E-03 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 4.07E-06 | 1.088E-03 |
|---|
| regulation of focal adhesion formation | GO:0051893 | | 4.07E-06 | 9.791E-04 |
|---|
| regulation of ligase activity | GO:0051340 | | 4.522E-06 | 9.89E-04 |
|---|
Loi_GPL570 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| negative regulation of protein ubiquitination | GO:0031397 | | 1.234E-06 | 3.015E-03 |
|---|
| activation of Ras GTPase activity | GO:0032856 | | 1.851E-06 | 2.261E-03 |
|---|
| anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process | GO:0031145 | | 1.889E-06 | 1.538E-03 |
|---|
| positive regulation of ubiquitin-protein ligase activity during mitotic cell cycle | GO:0051437 | | 1.975E-06 | 1.206E-03 |
|---|
| positive regulation of ubiquitin-protein ligase activity | GO:0051443 | | 2.246E-06 | 1.098E-03 |
|---|
| regulation of ubiquitin-protein ligase activity during mitotic cell cycle | GO:0051439 | | 2.246E-06 | 9.146E-04 |
|---|
| positive regulation of ligase activity | GO:0051351 | | 2.752E-06 | 9.605E-04 |
|---|
| regulation of ubiquitin-protein ligase activity | GO:0051438 | | 2.974E-06 | 9.082E-04 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 3.453E-06 | 9.374E-04 |
|---|
| regulation of focal adhesion formation | GO:0051893 | | 3.453E-06 | 8.436E-04 |
|---|
| regulation of ligase activity | GO:0051340 | | 3.58E-06 | 7.95E-04 |
|---|
Loi_GPL96-GPL97 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| negative regulation of protein ubiquitination | GO:0031397 | | 1.454E-06 | 3.499E-03 |
|---|
| activation of Ras GTPase activity | GO:0032856 | | 1.454E-06 | 1.75E-03 |
|---|
| anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process | GO:0031145 | | 2.387E-06 | 1.914E-03 |
|---|
| positive regulation of ubiquitin-protein ligase activity during mitotic cell cycle | GO:0051437 | | 2.495E-06 | 1.501E-03 |
|---|
| positive regulation of ubiquitin-protein ligase activity | GO:0051443 | | 2.838E-06 | 1.366E-03 |
|---|
| regulation of ubiquitin-protein ligase activity during mitotic cell cycle | GO:0051439 | | 2.838E-06 | 1.138E-03 |
|---|
| positive regulation of ligase activity | GO:0051351 | | 3.477E-06 | 1.195E-03 |
|---|
| regulation of ubiquitin-protein ligase activity | GO:0051438 | | 3.757E-06 | 1.13E-03 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 4.07E-06 | 1.088E-03 |
|---|
| regulation of focal adhesion formation | GO:0051893 | | 4.07E-06 | 9.791E-04 |
|---|
| regulation of ligase activity | GO:0051340 | | 4.522E-06 | 9.89E-04 |
|---|
Pawitan_GPL96-GPL97 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| negative regulation of protein ubiquitination | GO:0031397 | | 1.454E-06 | 3.499E-03 |
|---|
| activation of Ras GTPase activity | GO:0032856 | | 1.454E-06 | 1.75E-03 |
|---|
| anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process | GO:0031145 | | 2.387E-06 | 1.914E-03 |
|---|
| positive regulation of ubiquitin-protein ligase activity during mitotic cell cycle | GO:0051437 | | 2.495E-06 | 1.501E-03 |
|---|
| positive regulation of ubiquitin-protein ligase activity | GO:0051443 | | 2.838E-06 | 1.366E-03 |
|---|
| regulation of ubiquitin-protein ligase activity during mitotic cell cycle | GO:0051439 | | 2.838E-06 | 1.138E-03 |
|---|
| positive regulation of ligase activity | GO:0051351 | | 3.477E-06 | 1.195E-03 |
|---|
| regulation of ubiquitin-protein ligase activity | GO:0051438 | | 3.757E-06 | 1.13E-03 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 4.07E-06 | 1.088E-03 |
|---|
| regulation of focal adhesion formation | GO:0051893 | | 4.07E-06 | 9.791E-04 |
|---|
| regulation of ligase activity | GO:0051340 | | 4.522E-06 | 9.89E-04 |
|---|
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| negative regulation of protein ubiquitination | GO:0031397 | | 2.942E-06 | 6.767E-03 |
|---|
| positive regulation of Rho GTPase activity | GO:0032321 | | 2.942E-06 | 3.384E-03 |
|---|
| anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process | GO:0031145 | | 4.767E-06 | 3.655E-03 |
|---|
| positive regulation of ubiquitin-protein ligase activity during mitotic cell cycle | GO:0051437 | | 5.008E-06 | 2.88E-03 |
|---|
| positive regulation of ubiquitin-protein ligase activity | GO:0051443 | | 5.779E-06 | 2.658E-03 |
|---|
| regulation of ubiquitin-protein ligase activity during mitotic cell cycle | GO:0051439 | | 5.779E-06 | 2.215E-03 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 6.175E-06 | 2.029E-03 |
|---|
| regulation of focal adhesion formation | GO:0051893 | | 6.175E-06 | 1.775E-03 |
|---|
| positive regulation of ligase activity | GO:0051351 | | 6.923E-06 | 1.769E-03 |
|---|
| regulation of ubiquitin-protein ligase activity | GO:0051438 | | 7.548E-06 | 1.736E-03 |
|---|
| positive regulation of Ras GTPase activity | GO:0032320 | | 8.231E-06 | 1.721E-03 |
|---|
Sotiriou file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| negative regulation of protein ubiquitination | GO:0031397 | | 2.942E-06 | 6.767E-03 |
|---|
| positive regulation of Rho GTPase activity | GO:0032321 | | 2.942E-06 | 3.384E-03 |
|---|
| anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process | GO:0031145 | | 4.767E-06 | 3.655E-03 |
|---|
| positive regulation of ubiquitin-protein ligase activity during mitotic cell cycle | GO:0051437 | | 5.008E-06 | 2.88E-03 |
|---|
| positive regulation of ubiquitin-protein ligase activity | GO:0051443 | | 5.779E-06 | 2.658E-03 |
|---|
| regulation of ubiquitin-protein ligase activity during mitotic cell cycle | GO:0051439 | | 5.779E-06 | 2.215E-03 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 6.175E-06 | 2.029E-03 |
|---|
| regulation of focal adhesion formation | GO:0051893 | | 6.175E-06 | 1.775E-03 |
|---|
| positive regulation of ligase activity | GO:0051351 | | 6.923E-06 | 1.769E-03 |
|---|
| regulation of ubiquitin-protein ligase activity | GO:0051438 | | 7.548E-06 | 1.736E-03 |
|---|
| positive regulation of Ras GTPase activity | GO:0032320 | | 8.231E-06 | 1.721E-03 |
|---|
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| negative regulation of protein ubiquitination | GO:0031397 | | 2.942E-06 | 6.767E-03 |
|---|
| positive regulation of Rho GTPase activity | GO:0032321 | | 2.942E-06 | 3.384E-03 |
|---|
| anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process | GO:0031145 | | 4.767E-06 | 3.655E-03 |
|---|
| positive regulation of ubiquitin-protein ligase activity during mitotic cell cycle | GO:0051437 | | 5.008E-06 | 2.88E-03 |
|---|
| positive regulation of ubiquitin-protein ligase activity | GO:0051443 | | 5.779E-06 | 2.658E-03 |
|---|
| regulation of ubiquitin-protein ligase activity during mitotic cell cycle | GO:0051439 | | 5.779E-06 | 2.215E-03 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 6.175E-06 | 2.029E-03 |
|---|
| regulation of focal adhesion formation | GO:0051893 | | 6.175E-06 | 1.775E-03 |
|---|
| positive regulation of ligase activity | GO:0051351 | | 6.923E-06 | 1.769E-03 |
|---|
| regulation of ubiquitin-protein ligase activity | GO:0051438 | | 7.548E-06 | 1.736E-03 |
|---|
| positive regulation of Ras GTPase activity | GO:0032320 | | 8.231E-06 | 1.721E-03 |
|---|
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| negative regulation of protein ubiquitination | GO:0031397 | | 2.942E-06 | 6.767E-03 |
|---|
| positive regulation of Rho GTPase activity | GO:0032321 | | 2.942E-06 | 3.384E-03 |
|---|
| anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process | GO:0031145 | | 4.767E-06 | 3.655E-03 |
|---|
| positive regulation of ubiquitin-protein ligase activity during mitotic cell cycle | GO:0051437 | | 5.008E-06 | 2.88E-03 |
|---|
| positive regulation of ubiquitin-protein ligase activity | GO:0051443 | | 5.779E-06 | 2.658E-03 |
|---|
| regulation of ubiquitin-protein ligase activity during mitotic cell cycle | GO:0051439 | | 5.779E-06 | 2.215E-03 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 6.175E-06 | 2.029E-03 |
|---|
| regulation of focal adhesion formation | GO:0051893 | | 6.175E-06 | 1.775E-03 |
|---|
| positive regulation of ligase activity | GO:0051351 | | 6.923E-06 | 1.769E-03 |
|---|
| regulation of ubiquitin-protein ligase activity | GO:0051438 | | 7.548E-06 | 1.736E-03 |
|---|
| positive regulation of Ras GTPase activity | GO:0032320 | | 8.231E-06 | 1.721E-03 |
|---|
