Study run-b1

Study informations

127 subnetworks in total page | file

236 genes associated page | file

Enriched GO terms page

General informations

General Index page

Study Index page

Subnetwork 11198-0-real

score

Dataset	Score	P-val 1	P-val 2	P-val 3
Desmedt	0.1272	1.601e-02	6.142e-03	8.445e-02
IPC-NIBC-129	0.2084	1.048e-01	9.272e-02	4.479e-01
Ivshina_GPL96-GPL97	0.2243	2.719e-02	1.969e-02	2.848e-01
Loi_GPL570	0.2141	1.221e-01	1.505e-01	4.355e-01
Loi_GPL96-GPL97	0.1915	5.185e-02	4.287e-02	5.851e-01
Pawitan_GPL96-GPL97	0.3392	2.545e-01	1.800e-01	7.988e-01
Schmidt	0.1952	2.238e-02	2.384e-02	1.477e-01
Sotiriou	0.2773	7.302e-02	2.671e-02	4.695e-01
Wang	0.1757	7.245e-02	5.615e-02	2.383e-01
Zhang	0.1663	5.550e-03	2.638e-03	2.879e-02

Expression data for subnetwork 11198-0-real in each dataset

Desmedt | IPC-NIBC-129 | Ivshina_GPL96-GPL97 | Loi_GPL570 | Loi_GPL96-GPL97 | Pawitan_GPL96-GPL97 | Schmidt | Sotiriou | Wang | Zhang |

Subnetwork structure for each dataset

Desmedt IPC-NIBC-129 Ivshina_GPL96-GPL97 Loi_GPL570 Loi_GPL96-GPL97 Pawitan_GPL96-GPL97 Schmidt Sotiriou Wang Zhang

Desmedt

Score for each gene in subnetwork 11198-0-real in each dataset

Gene Symbol	Links	Frequency	Frequency Rank	Subnetwork score rank	Global rank	Desmedt	IPC-NIBC-129	Ivshina_GPL96-GPL97	Loi_GPL570	Loi_GPL96-GPL97	Pawitan_GPL96-GPL97	Schmidt	Sotiriou	Wang	Zhang
mcm6		2	53	97	94	0.021	0.271	0.148	0.061	0.121	0.320	0.258	0.144	0.141	0.084
cdc2		99	1	1	1	0.073	0.247	0.206	0.172	0.247	0.282	0.226	0.221	0.067	0.297
mcm2		4	27	188	164	0.151	0.254	0.188	0.128	0.154	0.267	0.224	0.200	0.101	0.012
supt16h		1	90	226	231	-0.052	0.077	0.131	0.124	0.095	0.044	0.089	0.075	0.037	-0.016
ccnb1		33	4	68	40	0.082	0.246	0.212	0.224	0.256	0.351	0.129	0.249	0.152	0.167
ccnd1		97	2	8	2	0.127	-0.183	0.062	0.190	0.157	0.105	-0.107	0.174	0.106	0.144
mcm4		1	90	226	231	0.044	0.150	0.116	0.064	0.122	0.215	0.181	0.144	0.091	0.074

GO Enrichment output for subnetwork 11198-0-real in each dataset

Desmedt file

Name	Accession Number	Link	P-val	Corrected P-val
DNA unwinding during replication	GO:0006268		1.832E-10	4.214E-07
DNA replication initiation	GO:0006270		3.328E-10	3.828E-07
DNA duplex unwinding	GO:0032508		4.351E-10	3.335E-07
DNA-dependent DNA replication	GO:0006261		2.232E-08	1.283E-05
positive regulation of cyclin-dependent protein kinase activity	GO:0045737		1.07E-05	4.921E-03
anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process	GO:0031145		1.128E-05	4.323E-03
positive regulation of ubiquitin-protein ligase activity during mitotic cell cycle	GO:0051437		1.185E-05	3.892E-03
positive regulation of ubiquitin-protein ligase activity	GO:0051443		1.366E-05	3.928E-03
regulation of ubiquitin-protein ligase activity during mitotic cell cycle	GO:0051439		1.366E-05	3.492E-03
nucleosome disassembly	GO:0006337		1.426E-05	3.279E-03
positive regulation of ligase activity	GO:0051351		1.636E-05	3.421E-03

IPC-NIBC-129 file

Name	Accession Number	Link	P-val	Corrected P-val
DNA replication initiation	GO:0006270		3.725E-11	9.1E-08
DNA unwinding during replication	GO:0006268		4.87E-11	5.949E-08
DNA duplex unwinding	GO:0032508		9.907E-11	8.067E-08
DNA-dependent DNA replication	GO:0006261		5.492E-09	3.354E-06
anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process	GO:0031145		2.997E-06	1.464E-03
positive regulation of ubiquitin-protein ligase activity during mitotic cell cycle	GO:0051437		3.133E-06	1.276E-03
positive regulation of ubiquitin-protein ligase activity	GO:0051443		3.563E-06	1.244E-03
regulation of ubiquitin-protein ligase activity during mitotic cell cycle	GO:0051439		3.563E-06	1.088E-03
positive regulation of ligase activity	GO:0051351		4.365E-06	1.185E-03
positive regulation of cyclin-dependent protein kinase activity	GO:0045737		4.648E-06	1.135E-03
nucleosome disassembly	GO:0006337		4.648E-06	1.032E-03

Ivshina_GPL96-GPL97 file

Name	Accession Number	Link	P-val	Corrected P-val
DNA replication initiation	GO:0006270		7.223E-11	1.738E-07
DNA unwinding during replication	GO:0006268		9.443E-11	1.136E-07
DNA duplex unwinding	GO:0032508		1.921E-10	1.54E-07
DNA-dependent DNA replication	GO:0006261		8.328E-09	5.009E-06
anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process	GO:0031145		4.913E-06	2.364E-03
positive regulation of ubiquitin-protein ligase activity during mitotic cell cycle	GO:0051437		5.134E-06	2.059E-03
positive regulation of ubiquitin-protein ligase activity	GO:0051443		5.839E-06	2.007E-03
regulation of ubiquitin-protein ligase activity during mitotic cell cycle	GO:0051439		5.839E-06	1.756E-03
positive regulation of cyclin-dependent protein kinase activity	GO:0045737		6.472E-06	1.73E-03
nucleosome disassembly	GO:0006337		6.472E-06	1.557E-03
positive regulation of ligase activity	GO:0051351		7.151E-06	1.564E-03

Loi_GPL570 file

Name	Accession Number	Link	P-val	Corrected P-val
DNA replication initiation	GO:0006270		3.725E-11	9.1E-08
DNA unwinding during replication	GO:0006268		4.87E-11	5.949E-08
DNA duplex unwinding	GO:0032508		9.907E-11	8.067E-08
DNA-dependent DNA replication	GO:0006261		5.492E-09	3.354E-06
anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process	GO:0031145		2.997E-06	1.464E-03
positive regulation of ubiquitin-protein ligase activity during mitotic cell cycle	GO:0051437		3.133E-06	1.276E-03
positive regulation of ubiquitin-protein ligase activity	GO:0051443		3.563E-06	1.244E-03
regulation of ubiquitin-protein ligase activity during mitotic cell cycle	GO:0051439		3.563E-06	1.088E-03
positive regulation of ligase activity	GO:0051351		4.365E-06	1.185E-03
positive regulation of cyclin-dependent protein kinase activity	GO:0045737		4.648E-06	1.135E-03
nucleosome disassembly	GO:0006337		4.648E-06	1.032E-03

Loi_GPL96-GPL97 file

Name	Accession Number	Link	P-val	Corrected P-val
DNA replication initiation	GO:0006270		7.223E-11	1.738E-07
DNA unwinding during replication	GO:0006268		9.443E-11	1.136E-07
DNA duplex unwinding	GO:0032508		1.921E-10	1.54E-07
DNA-dependent DNA replication	GO:0006261		8.328E-09	5.009E-06
anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process	GO:0031145		4.913E-06	2.364E-03
positive regulation of ubiquitin-protein ligase activity during mitotic cell cycle	GO:0051437		5.134E-06	2.059E-03
positive regulation of ubiquitin-protein ligase activity	GO:0051443		5.839E-06	2.007E-03
regulation of ubiquitin-protein ligase activity during mitotic cell cycle	GO:0051439		5.839E-06	1.756E-03
positive regulation of cyclin-dependent protein kinase activity	GO:0045737		6.472E-06	1.73E-03
nucleosome disassembly	GO:0006337		6.472E-06	1.557E-03
positive regulation of ligase activity	GO:0051351		7.151E-06	1.564E-03

Pawitan_GPL96-GPL97 file

Name	Accession Number	Link	P-val	Corrected P-val
DNA replication initiation	GO:0006270		7.223E-11	1.738E-07
DNA unwinding during replication	GO:0006268		9.443E-11	1.136E-07
DNA duplex unwinding	GO:0032508		1.921E-10	1.54E-07
DNA-dependent DNA replication	GO:0006261		8.328E-09	5.009E-06
anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process	GO:0031145		4.913E-06	2.364E-03
positive regulation of ubiquitin-protein ligase activity during mitotic cell cycle	GO:0051437		5.134E-06	2.059E-03
positive regulation of ubiquitin-protein ligase activity	GO:0051443		5.839E-06	2.007E-03
regulation of ubiquitin-protein ligase activity during mitotic cell cycle	GO:0051439		5.839E-06	1.756E-03
positive regulation of cyclin-dependent protein kinase activity	GO:0045737		6.472E-06	1.73E-03
nucleosome disassembly	GO:0006337		6.472E-06	1.557E-03
positive regulation of ligase activity	GO:0051351		7.151E-06	1.564E-03

Schmidt file

Name	Accession Number	Link	P-val	Corrected P-val
DNA unwinding during replication	GO:0006268		1.832E-10	4.214E-07
DNA replication initiation	GO:0006270		3.328E-10	3.828E-07
DNA duplex unwinding	GO:0032508		4.351E-10	3.335E-07
DNA-dependent DNA replication	GO:0006261		2.232E-08	1.283E-05
positive regulation of cyclin-dependent protein kinase activity	GO:0045737		1.07E-05	4.921E-03
anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process	GO:0031145		1.128E-05	4.323E-03
positive regulation of ubiquitin-protein ligase activity during mitotic cell cycle	GO:0051437		1.185E-05	3.892E-03
positive regulation of ubiquitin-protein ligase activity	GO:0051443		1.366E-05	3.928E-03
regulation of ubiquitin-protein ligase activity during mitotic cell cycle	GO:0051439		1.366E-05	3.492E-03
nucleosome disassembly	GO:0006337		1.426E-05	3.279E-03
positive regulation of ligase activity	GO:0051351		1.636E-05	3.421E-03

Sotiriou file

Name	Accession Number	Link	P-val	Corrected P-val
DNA unwinding during replication	GO:0006268		1.832E-10	4.214E-07
DNA replication initiation	GO:0006270		3.328E-10	3.828E-07
DNA duplex unwinding	GO:0032508		4.351E-10	3.335E-07
DNA-dependent DNA replication	GO:0006261		2.232E-08	1.283E-05
positive regulation of cyclin-dependent protein kinase activity	GO:0045737		1.07E-05	4.921E-03
anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process	GO:0031145		1.128E-05	4.323E-03
positive regulation of ubiquitin-protein ligase activity during mitotic cell cycle	GO:0051437		1.185E-05	3.892E-03
positive regulation of ubiquitin-protein ligase activity	GO:0051443		1.366E-05	3.928E-03
regulation of ubiquitin-protein ligase activity during mitotic cell cycle	GO:0051439		1.366E-05	3.492E-03
nucleosome disassembly	GO:0006337		1.426E-05	3.279E-03
positive regulation of ligase activity	GO:0051351		1.636E-05	3.421E-03

Wang file

Name	Accession Number	Link	P-val	Corrected P-val
DNA unwinding during replication	GO:0006268		1.832E-10	4.214E-07
DNA replication initiation	GO:0006270		3.328E-10	3.828E-07
DNA duplex unwinding	GO:0032508		4.351E-10	3.335E-07
DNA-dependent DNA replication	GO:0006261		2.232E-08	1.283E-05
positive regulation of cyclin-dependent protein kinase activity	GO:0045737		1.07E-05	4.921E-03
anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process	GO:0031145		1.128E-05	4.323E-03
positive regulation of ubiquitin-protein ligase activity during mitotic cell cycle	GO:0051437		1.185E-05	3.892E-03
positive regulation of ubiquitin-protein ligase activity	GO:0051443		1.366E-05	3.928E-03
regulation of ubiquitin-protein ligase activity during mitotic cell cycle	GO:0051439		1.366E-05	3.492E-03
nucleosome disassembly	GO:0006337		1.426E-05	3.279E-03
positive regulation of ligase activity	GO:0051351		1.636E-05	3.421E-03

Zhang file

Name	Accession Number	Link	P-val	Corrected P-val
DNA unwinding during replication	GO:0006268		1.832E-10	4.214E-07
DNA replication initiation	GO:0006270		3.328E-10	3.828E-07
DNA duplex unwinding	GO:0032508		4.351E-10	3.335E-07
DNA-dependent DNA replication	GO:0006261		2.232E-08	1.283E-05
positive regulation of cyclin-dependent protein kinase activity	GO:0045737		1.07E-05	4.921E-03
anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process	GO:0031145		1.128E-05	4.323E-03
positive regulation of ubiquitin-protein ligase activity during mitotic cell cycle	GO:0051437		1.185E-05	3.892E-03
positive regulation of ubiquitin-protein ligase activity	GO:0051443		1.366E-05	3.928E-03
regulation of ubiquitin-protein ligase activity during mitotic cell cycle	GO:0051439		1.366E-05	3.492E-03
nucleosome disassembly	GO:0006337		1.426E-05	3.279E-03
positive regulation of ligase activity	GO:0051351		1.636E-05	3.421E-03