Study run-b1
Study informations
127 subnetworks in total page | file
236 genes associated page | file
Enriched GO terms page
General informations
General Index page
Study Index page
Subnetwork 10939-0-real
score
| Dataset | Score | P-val 1 | P-val 2 | P-val 3 |
|---|
| Desmedt | 0.1620 | 7.903e-03 | 2.342e-03 | 4.824e-02 |
|---|
| IPC-NIBC-129 | 0.2353 | 4.963e-02 | 3.969e-02 | 2.379e-01 |
|---|
| Ivshina_GPL96-GPL97 | 0.2580 | 1.595e-02 | 1.053e-02 | 1.862e-01 |
|---|
| Loi_GPL570 | 0.2735 | 1.054e-01 | 1.315e-01 | 3.935e-01 |
|---|
| Loi_GPL96-GPL97 | 0.1601 | 1.404e-02 | 7.739e-03 | 1.932e-01 |
|---|
| Pawitan_GPL96-GPL97 | 0.3194 | 3.856e-02 | 1.603e-02 | 2.535e-01 |
|---|
| Schmidt | 0.2065 | 1.577e-02 | 1.694e-02 | 1.092e-01 |
|---|
| Sotiriou | 0.2993 | 1.206e-01 | 5.469e-02 | 6.293e-01 |
|---|
| Wang | 0.1905 | 5.631e-02 | 4.079e-02 | 1.973e-01 |
|---|
| Zhang | 0.3415 | 7.770e-03 | 3.840e-03 | 3.801e-02 |
|---|
Expression data for subnetwork 10939-0-real in each dataset
Desmedt |
IPC-NIBC-129 |
Ivshina_GPL96-GPL97 |
Loi_GPL570 |
Loi_GPL96-GPL97 |
Pawitan_GPL96-GPL97 |
Schmidt |
Sotiriou |
Wang |
Zhang |
Subnetwork structure for each dataset
- Desmedt
Score for each gene in subnetwork 10939-0-real in each dataset
| Gene Symbol | Links | Frequency | Frequency Rank | Subnetwork score rank | Global rank |
Desmedt | IPC-NIBC-129 | Ivshina_GPL96-GPL97 | Loi_GPL570 | Loi_GPL96-GPL97 | Pawitan_GPL96-GPL97 | Schmidt | Sotiriou | Wang | Zhang |
|---|
| cdkn3 |   | 18 | 9 | 26 | 16 | 0.114 | 0.269 | 0.199 | 0.136 | 0.193 | 0.323 | 0.186 | 0.198 | 0.134 | 0.271 |
|---|
| pin1 | | 4 | 27 | 26 | 20 | -0.012 | 0.181 | 0.133 | 0.270 | 0.112 | 0.072 | 0.063 | 0.161 | 0.033 | 0.259 |
|---|
| kars | | 1 | 90 | 26 | 47 | 0.062 | 0.134 | 0.180 | 0.033 | 0.120 | 0.152 | 0.186 | 0.204 | 0.129 | 0.017 |
|---|
| ccnd1 | | 97 | 2 | 8 | 2 | 0.127 | -0.183 | 0.062 | 0.190 | 0.157 | 0.105 | -0.107 | 0.174 | 0.106 | 0.144 |
|---|
| tsc1 | | 31 | 5 | 26 | 15 | 0.049 | 0.012 | -0.055 | 0.072 | 0.055 | -0.196 | 0.006 | 0.010 | 0.043 | -0.007 |
|---|
| cdc2 | | 99 | 1 | 1 | 1 | 0.073 | 0.247 | 0.206 | 0.172 | 0.247 | 0.282 | 0.226 | 0.221 | 0.067 | 0.297 |
|---|
| afg3l2 | | 1 | 90 | 26 | 47 | -0.100 | 0.164 | 0.086 | 0.114 | 0.085 | 0.091 | 0.119 | 0.086 | 0.006 | 0.031 |
|---|
| pkmyt1 | | 4 | 27 | 26 | 20 | 0.219 | 0.222 | 0.151 | 0.190 | 0.092 | 0.202 | 0.156 | 0.061 | 0.117 | 0.288 |
|---|
GO Enrichment output for subnetwork 10939-0-real in each dataset
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 |  | 3.125E-08 | 7.188E-05 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 3.003E-06 | 3.453E-03 |
|---|
| negative regulation of protein ubiquitination | GO:0031397 | | 4.314E-06 | 3.308E-03 |
|---|
| positive regulation of Rho GTPase activity | GO:0032321 | | 4.314E-06 | 2.481E-03 |
|---|
| regulation of mitosis | GO:0007088 | | 6.009E-06 | 2.764E-03 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 9.053E-06 | 3.47E-03 |
|---|
| reflex | GO:0060004 | | 9.053E-06 | 2.975E-03 |
|---|
| regulation of focal adhesion formation | GO:0051893 | | 9.053E-06 | 2.603E-03 |
|---|
| positive regulation of Ras GTPase activity | GO:0032320 | | 1.207E-05 | 3.084E-03 |
|---|
| positive regulation of GTPase activity | GO:0043547 | | 1.551E-05 | 3.567E-03 |
|---|
| regulation of phosphoprotein phosphatase activity | GO:0043666 | | 1.551E-05 | 3.243E-03 |
|---|
IPC-NIBC-129 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 1.066E-08 | 2.604E-05 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 1.123E-06 | 1.371E-03 |
|---|
| negative regulation of protein ubiquitination | GO:0031397 | | 1.898E-06 | 1.546E-03 |
|---|
| activation of Ras GTPase activity | GO:0032856 | | 2.847E-06 | 1.739E-03 |
|---|
| regulation of mitosis | GO:0007088 | | 2.923E-06 | 1.428E-03 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 5.311E-06 | 2.162E-03 |
|---|
| reflex | GO:0060004 | | 5.311E-06 | 1.853E-03 |
|---|
| regulation of focal adhesion formation | GO:0051893 | | 5.311E-06 | 1.622E-03 |
|---|
| regulation of phosphoprotein phosphatase activity | GO:0043666 | | 6.826E-06 | 1.853E-03 |
|---|
| regulation of phosphatase activity | GO:0010921 | | 8.531E-06 | 2.084E-03 |
|---|
| regulation of stress fiber formation | GO:0051492 | | 8.531E-06 | 1.895E-03 |
|---|
Ivshina_GPL96-GPL97 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 1.549E-08 | 3.727E-05 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 1.498E-06 | 1.802E-03 |
|---|
| negative regulation of protein ubiquitination | GO:0031397 | | 2.313E-06 | 1.855E-03 |
|---|
| activation of Ras GTPase activity | GO:0032856 | | 2.313E-06 | 1.391E-03 |
|---|
| regulation of mitosis | GO:0007088 | | 3.898E-06 | 1.876E-03 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 6.472E-06 | 2.595E-03 |
|---|
| reflex | GO:0060004 | | 6.472E-06 | 2.224E-03 |
|---|
| regulation of focal adhesion formation | GO:0051893 | | 6.472E-06 | 1.946E-03 |
|---|
| regulation of phosphoprotein phosphatase activity | GO:0043666 | | 8.318E-06 | 2.224E-03 |
|---|
| regulation of phosphatase activity | GO:0010921 | | 1.039E-05 | 2.501E-03 |
|---|
| regulation of stress fiber formation | GO:0051492 | | 1.039E-05 | 2.274E-03 |
|---|
Loi_GPL570 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 1.066E-08 | 2.604E-05 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 1.123E-06 | 1.371E-03 |
|---|
| negative regulation of protein ubiquitination | GO:0031397 | | 1.898E-06 | 1.546E-03 |
|---|
| activation of Ras GTPase activity | GO:0032856 | | 2.847E-06 | 1.739E-03 |
|---|
| regulation of mitosis | GO:0007088 | | 2.923E-06 | 1.428E-03 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 5.311E-06 | 2.162E-03 |
|---|
| reflex | GO:0060004 | | 5.311E-06 | 1.853E-03 |
|---|
| regulation of focal adhesion formation | GO:0051893 | | 5.311E-06 | 1.622E-03 |
|---|
| regulation of phosphoprotein phosphatase activity | GO:0043666 | | 6.826E-06 | 1.853E-03 |
|---|
| regulation of phosphatase activity | GO:0010921 | | 8.531E-06 | 2.084E-03 |
|---|
| regulation of stress fiber formation | GO:0051492 | | 8.531E-06 | 1.895E-03 |
|---|
Loi_GPL96-GPL97 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 1.549E-08 | 3.727E-05 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 1.498E-06 | 1.802E-03 |
|---|
| negative regulation of protein ubiquitination | GO:0031397 | | 2.313E-06 | 1.855E-03 |
|---|
| activation of Ras GTPase activity | GO:0032856 | | 2.313E-06 | 1.391E-03 |
|---|
| regulation of mitosis | GO:0007088 | | 3.898E-06 | 1.876E-03 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 6.472E-06 | 2.595E-03 |
|---|
| reflex | GO:0060004 | | 6.472E-06 | 2.224E-03 |
|---|
| regulation of focal adhesion formation | GO:0051893 | | 6.472E-06 | 1.946E-03 |
|---|
| regulation of phosphoprotein phosphatase activity | GO:0043666 | | 8.318E-06 | 2.224E-03 |
|---|
| regulation of phosphatase activity | GO:0010921 | | 1.039E-05 | 2.501E-03 |
|---|
| regulation of stress fiber formation | GO:0051492 | | 1.039E-05 | 2.274E-03 |
|---|
Pawitan_GPL96-GPL97 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 1.549E-08 | 3.727E-05 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 1.498E-06 | 1.802E-03 |
|---|
| negative regulation of protein ubiquitination | GO:0031397 | | 2.313E-06 | 1.855E-03 |
|---|
| activation of Ras GTPase activity | GO:0032856 | | 2.313E-06 | 1.391E-03 |
|---|
| regulation of mitosis | GO:0007088 | | 3.898E-06 | 1.876E-03 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 6.472E-06 | 2.595E-03 |
|---|
| reflex | GO:0060004 | | 6.472E-06 | 2.224E-03 |
|---|
| regulation of focal adhesion formation | GO:0051893 | | 6.472E-06 | 1.946E-03 |
|---|
| regulation of phosphoprotein phosphatase activity | GO:0043666 | | 8.318E-06 | 2.224E-03 |
|---|
| regulation of phosphatase activity | GO:0010921 | | 1.039E-05 | 2.501E-03 |
|---|
| regulation of stress fiber formation | GO:0051492 | | 1.039E-05 | 2.274E-03 |
|---|
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 3.125E-08 | 7.188E-05 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 3.003E-06 | 3.453E-03 |
|---|
| negative regulation of protein ubiquitination | GO:0031397 | | 4.314E-06 | 3.308E-03 |
|---|
| positive regulation of Rho GTPase activity | GO:0032321 | | 4.314E-06 | 2.481E-03 |
|---|
| regulation of mitosis | GO:0007088 | | 6.009E-06 | 2.764E-03 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 9.053E-06 | 3.47E-03 |
|---|
| reflex | GO:0060004 | | 9.053E-06 | 2.975E-03 |
|---|
| regulation of focal adhesion formation | GO:0051893 | | 9.053E-06 | 2.603E-03 |
|---|
| positive regulation of Ras GTPase activity | GO:0032320 | | 1.207E-05 | 3.084E-03 |
|---|
| positive regulation of GTPase activity | GO:0043547 | | 1.551E-05 | 3.567E-03 |
|---|
| regulation of phosphoprotein phosphatase activity | GO:0043666 | | 1.551E-05 | 3.243E-03 |
|---|
Sotiriou file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 3.125E-08 | 7.188E-05 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 3.003E-06 | 3.453E-03 |
|---|
| negative regulation of protein ubiquitination | GO:0031397 | | 4.314E-06 | 3.308E-03 |
|---|
| positive regulation of Rho GTPase activity | GO:0032321 | | 4.314E-06 | 2.481E-03 |
|---|
| regulation of mitosis | GO:0007088 | | 6.009E-06 | 2.764E-03 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 9.053E-06 | 3.47E-03 |
|---|
| reflex | GO:0060004 | | 9.053E-06 | 2.975E-03 |
|---|
| regulation of focal adhesion formation | GO:0051893 | | 9.053E-06 | 2.603E-03 |
|---|
| positive regulation of Ras GTPase activity | GO:0032320 | | 1.207E-05 | 3.084E-03 |
|---|
| positive regulation of GTPase activity | GO:0043547 | | 1.551E-05 | 3.567E-03 |
|---|
| regulation of phosphoprotein phosphatase activity | GO:0043666 | | 1.551E-05 | 3.243E-03 |
|---|
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 3.125E-08 | 7.188E-05 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 3.003E-06 | 3.453E-03 |
|---|
| negative regulation of protein ubiquitination | GO:0031397 | | 4.314E-06 | 3.308E-03 |
|---|
| positive regulation of Rho GTPase activity | GO:0032321 | | 4.314E-06 | 2.481E-03 |
|---|
| regulation of mitosis | GO:0007088 | | 6.009E-06 | 2.764E-03 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 9.053E-06 | 3.47E-03 |
|---|
| reflex | GO:0060004 | | 9.053E-06 | 2.975E-03 |
|---|
| regulation of focal adhesion formation | GO:0051893 | | 9.053E-06 | 2.603E-03 |
|---|
| positive regulation of Ras GTPase activity | GO:0032320 | | 1.207E-05 | 3.084E-03 |
|---|
| positive regulation of GTPase activity | GO:0043547 | | 1.551E-05 | 3.567E-03 |
|---|
| regulation of phosphoprotein phosphatase activity | GO:0043666 | | 1.551E-05 | 3.243E-03 |
|---|
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 3.125E-08 | 7.188E-05 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 3.003E-06 | 3.453E-03 |
|---|
| negative regulation of protein ubiquitination | GO:0031397 | | 4.314E-06 | 3.308E-03 |
|---|
| positive regulation of Rho GTPase activity | GO:0032321 | | 4.314E-06 | 2.481E-03 |
|---|
| regulation of mitosis | GO:0007088 | | 6.009E-06 | 2.764E-03 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 9.053E-06 | 3.47E-03 |
|---|
| reflex | GO:0060004 | | 9.053E-06 | 2.975E-03 |
|---|
| regulation of focal adhesion formation | GO:0051893 | | 9.053E-06 | 2.603E-03 |
|---|
| positive regulation of Ras GTPase activity | GO:0032320 | | 1.207E-05 | 3.084E-03 |
|---|
| positive regulation of GTPase activity | GO:0043547 | | 1.551E-05 | 3.567E-03 |
|---|
| regulation of phosphoprotein phosphatase activity | GO:0043666 | | 1.551E-05 | 3.243E-03 |
|---|
