Study run-b1
Study informations
127 subnetworks in total page | file
236 genes associated page | file
Enriched GO terms page
General informations
General Index page
Study Index page
Subnetwork 1040-0-real
score
| Dataset | Score | P-val 1 | P-val 2 | P-val 3 |
|---|
| Desmedt | 0.1587 | 1.903e-02 | 7.764e-03 | 9.659e-02 |
|---|
| IPC-NIBC-129 | 0.1439 | 9.698e-02 | 8.492e-02 | 4.219e-01 |
|---|
| Ivshina_GPL96-GPL97 | 0.2160 | 9.538e-02 | 8.429e-02 | 6.325e-01 |
|---|
| Loi_GPL570 | 0.2204 | 1.291e-01 | 1.583e-01 | 4.521e-01 |
|---|
| Loi_GPL96-GPL97 | 0.2183 | 1.593e-02 | 9.154e-03 | 2.202e-01 |
|---|
| Pawitan_GPL96-GPL97 | 0.2694 | 5.496e-02 | 2.526e-02 | 3.310e-01 |
|---|
| Schmidt | 0.1910 | 2.375e-02 | 2.527e-02 | 1.554e-01 |
|---|
| Sotiriou | 0.2735 | 4.716e-02 | 1.429e-02 | 3.480e-01 |
|---|
| Wang | 0.1814 | 6.575e-02 | 4.966e-02 | 2.217e-01 |
|---|
| Zhang | 0.3096 | 1.801e-02 | 9.833e-03 | 7.523e-02 |
|---|
Expression data for subnetwork 1040-0-real in each dataset
Desmedt |
IPC-NIBC-129 |
Ivshina_GPL96-GPL97 |
Loi_GPL570 |
Loi_GPL96-GPL97 |
Pawitan_GPL96-GPL97 |
Schmidt |
Sotiriou |
Wang |
Zhang |
Subnetwork structure for each dataset
- Desmedt
Score for each gene in subnetwork 1040-0-real in each dataset
| Gene Symbol | Links | Frequency | Frequency Rank | Subnetwork score rank | Global rank |
Desmedt | IPC-NIBC-129 | Ivshina_GPL96-GPL97 | Loi_GPL570 | Loi_GPL96-GPL97 | Pawitan_GPL96-GPL97 | Schmidt | Sotiriou | Wang | Zhang |
|---|
| cks2 |   | 4 | 27 | 151 | 122 | 0.050 | 0.233 | 0.170 | 0.103 | 0.186 | 0.167 | 0.263 | 0.151 | 0.145 | 0.284 |
|---|
| cdc2 | | 99 | 1 | 1 | 1 | 0.073 | 0.247 | 0.206 | 0.172 | 0.247 | 0.282 | 0.226 | 0.221 | 0.067 | 0.297 |
|---|
| cds1 | | 1 | 90 | 207 | 207 | 0.069 | -0.166 | 0.011 | 0.159 | 0.091 | -0.045 | 0.122 | 0.081 | 0.031 | 0.216 |
|---|
| ccnb1 | | 33 | 4 | 68 | 40 | 0.082 | 0.246 | 0.212 | 0.224 | 0.256 | 0.351 | 0.129 | 0.249 | 0.152 | 0.167 |
|---|
| brca1 | | 5 | 20 | 104 | 78 | 0.192 | 0.052 | 0.112 | 0.022 | 0.125 | 0.113 | 0.077 | 0.168 | 0.155 | 0.064 |
|---|
| ccnd1 | | 97 | 2 | 8 | 2 | 0.127 | -0.183 | 0.062 | 0.190 | 0.157 | 0.105 | -0.107 | 0.174 | 0.106 | 0.144 |
|---|
GO Enrichment output for subnetwork 1040-0-real in each dataset
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 |  | 2.767E-06 | 6.363E-03 |
|---|
| regulation of centrosome cycle | GO:0046605 | | 2.942E-06 | 3.384E-03 |
|---|
| positive regulation of protein ubiquitination | GO:0031398 | | 4.412E-06 | 3.383E-03 |
|---|
| positive regulation of DNA repair | GO:0045739 | | 4.412E-06 | 2.537E-03 |
|---|
| DNA damage response. signal transduction resulting in transcription | GO:0042772 | | 4.412E-06 | 2.03E-03 |
|---|
| anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process | GO:0031145 | | 4.767E-06 | 1.827E-03 |
|---|
| positive regulation of ubiquitin-protein ligase activity during mitotic cell cycle | GO:0051437 | | 5.008E-06 | 1.645E-03 |
|---|
| positive regulation of ubiquitin-protein ligase activity | GO:0051443 | | 5.779E-06 | 1.661E-03 |
|---|
| regulation of ubiquitin-protein ligase activity during mitotic cell cycle | GO:0051439 | | 5.779E-06 | 1.477E-03 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 6.175E-06 | 1.42E-03 |
|---|
| negative regulation of lipid biosynthetic process | GO:0051055 | | 6.175E-06 | 1.291E-03 |
|---|
IPC-NIBC-129 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 1.106E-06 | 2.701E-03 |
|---|
| regulation of centrosome cycle | GO:0046605 | | 1.234E-06 | 1.507E-03 |
|---|
| positive regulation of DNA repair | GO:0045739 | | 1.851E-06 | 1.507E-03 |
|---|
| DNA damage response. signal transduction resulting in transcription | GO:0042772 | | 1.851E-06 | 1.13E-03 |
|---|
| anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process | GO:0031145 | | 1.889E-06 | 9.231E-04 |
|---|
| positive regulation of ubiquitin-protein ligase activity during mitotic cell cycle | GO:0051437 | | 1.975E-06 | 8.04E-04 |
|---|
| positive regulation of ubiquitin-protein ligase activity | GO:0051443 | | 2.246E-06 | 7.84E-04 |
|---|
| regulation of ubiquitin-protein ligase activity during mitotic cell cycle | GO:0051439 | | 2.246E-06 | 6.86E-04 |
|---|
| positive regulation of protein ubiquitination | GO:0031398 | | 2.59E-06 | 7.032E-04 |
|---|
| positive regulation of ligase activity | GO:0051351 | | 2.752E-06 | 6.724E-04 |
|---|
| regulation of ubiquitin-protein ligase activity | GO:0051438 | | 2.974E-06 | 6.605E-04 |
|---|
Ivshina_GPL96-GPL97 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of centrosome cycle | GO:0046605 | | 1.719E-06 | 4.135E-03 |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 1.814E-06 | 2.182E-03 |
|---|
| positive regulation of DNA repair | GO:0045739 | | 2.577E-06 | 2.067E-03 |
|---|
| DNA damage response. signal transduction resulting in transcription | GO:0042772 | | 2.577E-06 | 1.55E-03 |
|---|
| anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process | GO:0031145 | | 3.098E-06 | 1.491E-03 |
|---|
| positive regulation of ubiquitin-protein ligase activity during mitotic cell cycle | GO:0051437 | | 3.238E-06 | 1.298E-03 |
|---|
| positive regulation of protein ubiquitination | GO:0031398 | | 3.607E-06 | 1.24E-03 |
|---|
| positive regulation of ubiquitin-protein ligase activity | GO:0051443 | | 3.683E-06 | 1.108E-03 |
|---|
| regulation of ubiquitin-protein ligase activity during mitotic cell cycle | GO:0051439 | | 3.683E-06 | 9.846E-04 |
|---|
| positive regulation of ligase activity | GO:0051351 | | 4.512E-06 | 1.085E-03 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 4.809E-06 | 1.052E-03 |
|---|
Loi_GPL570 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 1.106E-06 | 2.701E-03 |
|---|
| regulation of centrosome cycle | GO:0046605 | | 1.234E-06 | 1.507E-03 |
|---|
| positive regulation of DNA repair | GO:0045739 | | 1.851E-06 | 1.507E-03 |
|---|
| DNA damage response. signal transduction resulting in transcription | GO:0042772 | | 1.851E-06 | 1.13E-03 |
|---|
| anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process | GO:0031145 | | 1.889E-06 | 9.231E-04 |
|---|
| positive regulation of ubiquitin-protein ligase activity during mitotic cell cycle | GO:0051437 | | 1.975E-06 | 8.04E-04 |
|---|
| positive regulation of ubiquitin-protein ligase activity | GO:0051443 | | 2.246E-06 | 7.84E-04 |
|---|
| regulation of ubiquitin-protein ligase activity during mitotic cell cycle | GO:0051439 | | 2.246E-06 | 6.86E-04 |
|---|
| positive regulation of protein ubiquitination | GO:0031398 | | 2.59E-06 | 7.032E-04 |
|---|
| positive regulation of ligase activity | GO:0051351 | | 2.752E-06 | 6.724E-04 |
|---|
| regulation of ubiquitin-protein ligase activity | GO:0051438 | | 2.974E-06 | 6.605E-04 |
|---|
Loi_GPL96-GPL97 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of centrosome cycle | GO:0046605 | | 1.719E-06 | 4.135E-03 |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 1.814E-06 | 2.182E-03 |
|---|
| positive regulation of DNA repair | GO:0045739 | | 2.577E-06 | 2.067E-03 |
|---|
| DNA damage response. signal transduction resulting in transcription | GO:0042772 | | 2.577E-06 | 1.55E-03 |
|---|
| anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process | GO:0031145 | | 3.098E-06 | 1.491E-03 |
|---|
| positive regulation of ubiquitin-protein ligase activity during mitotic cell cycle | GO:0051437 | | 3.238E-06 | 1.298E-03 |
|---|
| positive regulation of protein ubiquitination | GO:0031398 | | 3.607E-06 | 1.24E-03 |
|---|
| positive regulation of ubiquitin-protein ligase activity | GO:0051443 | | 3.683E-06 | 1.108E-03 |
|---|
| regulation of ubiquitin-protein ligase activity during mitotic cell cycle | GO:0051439 | | 3.683E-06 | 9.846E-04 |
|---|
| positive regulation of ligase activity | GO:0051351 | | 4.512E-06 | 1.085E-03 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 4.809E-06 | 1.052E-03 |
|---|
Pawitan_GPL96-GPL97 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of centrosome cycle | GO:0046605 | | 1.719E-06 | 4.135E-03 |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 1.814E-06 | 2.182E-03 |
|---|
| positive regulation of DNA repair | GO:0045739 | | 2.577E-06 | 2.067E-03 |
|---|
| DNA damage response. signal transduction resulting in transcription | GO:0042772 | | 2.577E-06 | 1.55E-03 |
|---|
| anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process | GO:0031145 | | 3.098E-06 | 1.491E-03 |
|---|
| positive regulation of ubiquitin-protein ligase activity during mitotic cell cycle | GO:0051437 | | 3.238E-06 | 1.298E-03 |
|---|
| positive regulation of protein ubiquitination | GO:0031398 | | 3.607E-06 | 1.24E-03 |
|---|
| positive regulation of ubiquitin-protein ligase activity | GO:0051443 | | 3.683E-06 | 1.108E-03 |
|---|
| regulation of ubiquitin-protein ligase activity during mitotic cell cycle | GO:0051439 | | 3.683E-06 | 9.846E-04 |
|---|
| positive regulation of ligase activity | GO:0051351 | | 4.512E-06 | 1.085E-03 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 4.809E-06 | 1.052E-03 |
|---|
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 2.767E-06 | 6.363E-03 |
|---|
| regulation of centrosome cycle | GO:0046605 | | 2.942E-06 | 3.384E-03 |
|---|
| positive regulation of protein ubiquitination | GO:0031398 | | 4.412E-06 | 3.383E-03 |
|---|
| positive regulation of DNA repair | GO:0045739 | | 4.412E-06 | 2.537E-03 |
|---|
| DNA damage response. signal transduction resulting in transcription | GO:0042772 | | 4.412E-06 | 2.03E-03 |
|---|
| anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process | GO:0031145 | | 4.767E-06 | 1.827E-03 |
|---|
| positive regulation of ubiquitin-protein ligase activity during mitotic cell cycle | GO:0051437 | | 5.008E-06 | 1.645E-03 |
|---|
| positive regulation of ubiquitin-protein ligase activity | GO:0051443 | | 5.779E-06 | 1.661E-03 |
|---|
| regulation of ubiquitin-protein ligase activity during mitotic cell cycle | GO:0051439 | | 5.779E-06 | 1.477E-03 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 6.175E-06 | 1.42E-03 |
|---|
| negative regulation of lipid biosynthetic process | GO:0051055 | | 6.175E-06 | 1.291E-03 |
|---|
Sotiriou file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 2.767E-06 | 6.363E-03 |
|---|
| regulation of centrosome cycle | GO:0046605 | | 2.942E-06 | 3.384E-03 |
|---|
| positive regulation of protein ubiquitination | GO:0031398 | | 4.412E-06 | 3.383E-03 |
|---|
| positive regulation of DNA repair | GO:0045739 | | 4.412E-06 | 2.537E-03 |
|---|
| DNA damage response. signal transduction resulting in transcription | GO:0042772 | | 4.412E-06 | 2.03E-03 |
|---|
| anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process | GO:0031145 | | 4.767E-06 | 1.827E-03 |
|---|
| positive regulation of ubiquitin-protein ligase activity during mitotic cell cycle | GO:0051437 | | 5.008E-06 | 1.645E-03 |
|---|
| positive regulation of ubiquitin-protein ligase activity | GO:0051443 | | 5.779E-06 | 1.661E-03 |
|---|
| regulation of ubiquitin-protein ligase activity during mitotic cell cycle | GO:0051439 | | 5.779E-06 | 1.477E-03 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 6.175E-06 | 1.42E-03 |
|---|
| negative regulation of lipid biosynthetic process | GO:0051055 | | 6.175E-06 | 1.291E-03 |
|---|
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 2.767E-06 | 6.363E-03 |
|---|
| regulation of centrosome cycle | GO:0046605 | | 2.942E-06 | 3.384E-03 |
|---|
| positive regulation of protein ubiquitination | GO:0031398 | | 4.412E-06 | 3.383E-03 |
|---|
| positive regulation of DNA repair | GO:0045739 | | 4.412E-06 | 2.537E-03 |
|---|
| DNA damage response. signal transduction resulting in transcription | GO:0042772 | | 4.412E-06 | 2.03E-03 |
|---|
| anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process | GO:0031145 | | 4.767E-06 | 1.827E-03 |
|---|
| positive regulation of ubiquitin-protein ligase activity during mitotic cell cycle | GO:0051437 | | 5.008E-06 | 1.645E-03 |
|---|
| positive regulation of ubiquitin-protein ligase activity | GO:0051443 | | 5.779E-06 | 1.661E-03 |
|---|
| regulation of ubiquitin-protein ligase activity during mitotic cell cycle | GO:0051439 | | 5.779E-06 | 1.477E-03 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 6.175E-06 | 1.42E-03 |
|---|
| negative regulation of lipid biosynthetic process | GO:0051055 | | 6.175E-06 | 1.291E-03 |
|---|
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 2.767E-06 | 6.363E-03 |
|---|
| regulation of centrosome cycle | GO:0046605 | | 2.942E-06 | 3.384E-03 |
|---|
| positive regulation of protein ubiquitination | GO:0031398 | | 4.412E-06 | 3.383E-03 |
|---|
| positive regulation of DNA repair | GO:0045739 | | 4.412E-06 | 2.537E-03 |
|---|
| DNA damage response. signal transduction resulting in transcription | GO:0042772 | | 4.412E-06 | 2.03E-03 |
|---|
| anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process | GO:0031145 | | 4.767E-06 | 1.827E-03 |
|---|
| positive regulation of ubiquitin-protein ligase activity during mitotic cell cycle | GO:0051437 | | 5.008E-06 | 1.645E-03 |
|---|
| positive regulation of ubiquitin-protein ligase activity | GO:0051443 | | 5.779E-06 | 1.661E-03 |
|---|
| regulation of ubiquitin-protein ligase activity during mitotic cell cycle | GO:0051439 | | 5.779E-06 | 1.477E-03 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 6.175E-06 | 1.42E-03 |
|---|
| negative regulation of lipid biosynthetic process | GO:0051055 | | 6.175E-06 | 1.291E-03 |
|---|
