Study run-b1
Study informations
127 subnetworks in total page | file
236 genes associated page | file
Enriched GO terms page
General informations
General Index page
Study Index page
Subnetwork 1022-0-real
score
| Dataset | Score | P-val 1 | P-val 2 | P-val 3 |
|---|
| Desmedt | 0.1473 | 1.051e-02 | 3.457e-03 | 6.057e-02 |
|---|
| IPC-NIBC-129 | 0.2296 | 9.344e-02 | 8.143e-02 | 4.099e-01 |
|---|
| Ivshina_GPL96-GPL97 | 0.2444 | 1.787e-02 | 1.204e-02 | 2.046e-01 |
|---|
| Loi_GPL570 | 0.2233 | 1.635e-01 | 1.966e-01 | 5.269e-01 |
|---|
| Loi_GPL96-GPL97 | 0.1934 | 2.467e-02 | 1.632e-02 | 3.338e-01 |
|---|
| Pawitan_GPL96-GPL97 | 0.3431 | 5.076e-02 | 2.281e-02 | 3.123e-01 |
|---|
| Schmidt | 0.1726 | 1.385e-02 | 1.492e-02 | 9.731e-02 |
|---|
| Sotiriou | 0.3074 | 7.080e-02 | 2.556e-02 | 4.602e-01 |
|---|
| Wang | 0.1354 | 1.431e-01 | 1.312e-01 | 3.878e-01 |
|---|
| Zhang | 0.3167 | 5.198e-03 | 2.452e-03 | 2.727e-02 |
|---|
Expression data for subnetwork 1022-0-real in each dataset
Desmedt |
IPC-NIBC-129 |
Ivshina_GPL96-GPL97 |
Loi_GPL570 |
Loi_GPL96-GPL97 |
Pawitan_GPL96-GPL97 |
Schmidt |
Sotiriou |
Wang |
Zhang |
Subnetwork structure for each dataset
- Desmedt
Score for each gene in subnetwork 1022-0-real in each dataset
| Gene Symbol | Links | Frequency | Frequency Rank | Subnetwork score rank | Global rank |
Desmedt | IPC-NIBC-129 | Ivshina_GPL96-GPL97 | Loi_GPL570 | Loi_GPL96-GPL97 | Pawitan_GPL96-GPL97 | Schmidt | Sotiriou | Wang | Zhang |
|---|
| cdkn3 |   | 18 | 9 | 26 | 16 | 0.114 | 0.269 | 0.199 | 0.136 | 0.193 | 0.323 | 0.186 | 0.198 | 0.134 | 0.271 |
|---|
| tsc1 | | 31 | 5 | 26 | 15 | 0.049 | 0.012 | -0.055 | 0.072 | 0.055 | -0.196 | 0.006 | 0.010 | 0.043 | -0.007 |
|---|
| orc6l | | 2 | 53 | 97 | 94 | 0.094 | 0.270 | 0.084 | 0.114 | 0.106 | 0.234 | 0.192 | 0.105 | 0.086 | 0.175 |
|---|
| cdc2 | | 99 | 1 | 1 | 1 | 0.073 | 0.247 | 0.206 | 0.172 | 0.247 | 0.282 | 0.226 | 0.221 | 0.067 | 0.297 |
|---|
| cdk7 | | 1 | 90 | 109 | 115 | -0.102 | 0.121 | 0.116 | 0.126 | 0.170 | 0.090 | -0.085 | 0.182 | -0.023 | 0.021 |
|---|
| ccnd1 | | 97 | 2 | 8 | 2 | 0.127 | -0.183 | 0.062 | 0.190 | 0.157 | 0.105 | -0.107 | 0.174 | 0.106 | 0.144 |
|---|
GO Enrichment output for subnetwork 1022-0-real in each dataset
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 |  | 8.007E-09 | 1.842E-05 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 1.152E-06 | 1.325E-03 |
|---|
| negative regulation of protein ubiquitination | GO:0031397 | | 2.354E-06 | 1.805E-03 |
|---|
| positive regulation of Rho GTPase activity | GO:0032321 | | 2.354E-06 | 1.354E-03 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 4.941E-06 | 2.273E-03 |
|---|
| regulation of focal adhesion formation | GO:0051893 | | 4.941E-06 | 1.894E-03 |
|---|
| positive regulation of Ras GTPase activity | GO:0032320 | | 6.586E-06 | 2.164E-03 |
|---|
| positive regulation of GTPase activity | GO:0043547 | | 8.466E-06 | 2.434E-03 |
|---|
| regulation of phosphoprotein phosphatase activity | GO:0043666 | | 8.466E-06 | 2.163E-03 |
|---|
| regulation of stress fiber formation | GO:0051492 | | 8.466E-06 | 1.947E-03 |
|---|
| interphase of mitotic cell cycle | GO:0051329 | | 9.451E-06 | 1.976E-03 |
|---|
IPC-NIBC-129 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 1.944E-09 | 4.749E-06 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 3.323E-07 | 4.059E-04 |
|---|
| negative regulation of protein ubiquitination | GO:0031397 | | 8.703E-07 | 7.087E-04 |
|---|
| activation of Ras GTPase activity | GO:0032856 | | 1.305E-06 | 7.971E-04 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 2.436E-06 | 1.19E-03 |
|---|
| regulation of focal adhesion formation | GO:0051893 | | 2.436E-06 | 9.917E-04 |
|---|
| regulation of phosphoprotein phosphatase activity | GO:0043666 | | 3.131E-06 | 1.093E-03 |
|---|
| interphase of mitotic cell cycle | GO:0051329 | | 3.3E-06 | 1.008E-03 |
|---|
| regulation of phosphatase activity | GO:0010921 | | 3.913E-06 | 1.062E-03 |
|---|
| regulation of stress fiber formation | GO:0051492 | | 3.913E-06 | 9.559E-04 |
|---|
| positive regulation of Rho GTPase activity | GO:0032321 | | 4.782E-06 | 1.062E-03 |
|---|
Ivshina_GPL96-GPL97 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 2.4E-09 | 5.774E-06 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 3.972E-07 | 4.778E-04 |
|---|
| negative regulation of protein ubiquitination | GO:0031397 | | 9.918E-07 | 7.954E-04 |
|---|
| activation of Ras GTPase activity | GO:0032856 | | 9.918E-07 | 5.965E-04 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 2.775E-06 | 1.336E-03 |
|---|
| regulation of focal adhesion formation | GO:0051893 | | 2.775E-06 | 1.113E-03 |
|---|
| regulation of phosphoprotein phosphatase activity | GO:0043666 | | 3.568E-06 | 1.226E-03 |
|---|
| interphase of mitotic cell cycle | GO:0051329 | | 3.59E-06 | 1.08E-03 |
|---|
| interphase | GO:0051325 | | 3.943E-06 | 1.054E-03 |
|---|
| regulation of phosphatase activity | GO:0010921 | | 4.459E-06 | 1.073E-03 |
|---|
| regulation of stress fiber formation | GO:0051492 | | 4.459E-06 | 9.753E-04 |
|---|
Loi_GPL570 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 1.944E-09 | 4.749E-06 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 3.323E-07 | 4.059E-04 |
|---|
| negative regulation of protein ubiquitination | GO:0031397 | | 8.703E-07 | 7.087E-04 |
|---|
| activation of Ras GTPase activity | GO:0032856 | | 1.305E-06 | 7.971E-04 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 2.436E-06 | 1.19E-03 |
|---|
| regulation of focal adhesion formation | GO:0051893 | | 2.436E-06 | 9.917E-04 |
|---|
| regulation of phosphoprotein phosphatase activity | GO:0043666 | | 3.131E-06 | 1.093E-03 |
|---|
| interphase of mitotic cell cycle | GO:0051329 | | 3.3E-06 | 1.008E-03 |
|---|
| regulation of phosphatase activity | GO:0010921 | | 3.913E-06 | 1.062E-03 |
|---|
| regulation of stress fiber formation | GO:0051492 | | 3.913E-06 | 9.559E-04 |
|---|
| positive regulation of Rho GTPase activity | GO:0032321 | | 4.782E-06 | 1.062E-03 |
|---|
Loi_GPL96-GPL97 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 2.4E-09 | 5.774E-06 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 3.972E-07 | 4.778E-04 |
|---|
| negative regulation of protein ubiquitination | GO:0031397 | | 9.918E-07 | 7.954E-04 |
|---|
| activation of Ras GTPase activity | GO:0032856 | | 9.918E-07 | 5.965E-04 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 2.775E-06 | 1.336E-03 |
|---|
| regulation of focal adhesion formation | GO:0051893 | | 2.775E-06 | 1.113E-03 |
|---|
| regulation of phosphoprotein phosphatase activity | GO:0043666 | | 3.568E-06 | 1.226E-03 |
|---|
| interphase of mitotic cell cycle | GO:0051329 | | 3.59E-06 | 1.08E-03 |
|---|
| interphase | GO:0051325 | | 3.943E-06 | 1.054E-03 |
|---|
| regulation of phosphatase activity | GO:0010921 | | 4.459E-06 | 1.073E-03 |
|---|
| regulation of stress fiber formation | GO:0051492 | | 4.459E-06 | 9.753E-04 |
|---|
Pawitan_GPL96-GPL97 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 2.4E-09 | 5.774E-06 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 3.972E-07 | 4.778E-04 |
|---|
| negative regulation of protein ubiquitination | GO:0031397 | | 9.918E-07 | 7.954E-04 |
|---|
| activation of Ras GTPase activity | GO:0032856 | | 9.918E-07 | 5.965E-04 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 2.775E-06 | 1.336E-03 |
|---|
| regulation of focal adhesion formation | GO:0051893 | | 2.775E-06 | 1.113E-03 |
|---|
| regulation of phosphoprotein phosphatase activity | GO:0043666 | | 3.568E-06 | 1.226E-03 |
|---|
| interphase of mitotic cell cycle | GO:0051329 | | 3.59E-06 | 1.08E-03 |
|---|
| interphase | GO:0051325 | | 3.943E-06 | 1.054E-03 |
|---|
| regulation of phosphatase activity | GO:0010921 | | 4.459E-06 | 1.073E-03 |
|---|
| regulation of stress fiber formation | GO:0051492 | | 4.459E-06 | 9.753E-04 |
|---|
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 8.007E-09 | 1.842E-05 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 1.152E-06 | 1.325E-03 |
|---|
| negative regulation of protein ubiquitination | GO:0031397 | | 2.354E-06 | 1.805E-03 |
|---|
| positive regulation of Rho GTPase activity | GO:0032321 | | 2.354E-06 | 1.354E-03 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 4.941E-06 | 2.273E-03 |
|---|
| regulation of focal adhesion formation | GO:0051893 | | 4.941E-06 | 1.894E-03 |
|---|
| positive regulation of Ras GTPase activity | GO:0032320 | | 6.586E-06 | 2.164E-03 |
|---|
| positive regulation of GTPase activity | GO:0043547 | | 8.466E-06 | 2.434E-03 |
|---|
| regulation of phosphoprotein phosphatase activity | GO:0043666 | | 8.466E-06 | 2.163E-03 |
|---|
| regulation of stress fiber formation | GO:0051492 | | 8.466E-06 | 1.947E-03 |
|---|
| interphase of mitotic cell cycle | GO:0051329 | | 9.451E-06 | 1.976E-03 |
|---|
Sotiriou file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 8.007E-09 | 1.842E-05 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 1.152E-06 | 1.325E-03 |
|---|
| negative regulation of protein ubiquitination | GO:0031397 | | 2.354E-06 | 1.805E-03 |
|---|
| positive regulation of Rho GTPase activity | GO:0032321 | | 2.354E-06 | 1.354E-03 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 4.941E-06 | 2.273E-03 |
|---|
| regulation of focal adhesion formation | GO:0051893 | | 4.941E-06 | 1.894E-03 |
|---|
| positive regulation of Ras GTPase activity | GO:0032320 | | 6.586E-06 | 2.164E-03 |
|---|
| positive regulation of GTPase activity | GO:0043547 | | 8.466E-06 | 2.434E-03 |
|---|
| regulation of phosphoprotein phosphatase activity | GO:0043666 | | 8.466E-06 | 2.163E-03 |
|---|
| regulation of stress fiber formation | GO:0051492 | | 8.466E-06 | 1.947E-03 |
|---|
| interphase of mitotic cell cycle | GO:0051329 | | 9.451E-06 | 1.976E-03 |
|---|
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 8.007E-09 | 1.842E-05 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 1.152E-06 | 1.325E-03 |
|---|
| negative regulation of protein ubiquitination | GO:0031397 | | 2.354E-06 | 1.805E-03 |
|---|
| positive regulation of Rho GTPase activity | GO:0032321 | | 2.354E-06 | 1.354E-03 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 4.941E-06 | 2.273E-03 |
|---|
| regulation of focal adhesion formation | GO:0051893 | | 4.941E-06 | 1.894E-03 |
|---|
| positive regulation of Ras GTPase activity | GO:0032320 | | 6.586E-06 | 2.164E-03 |
|---|
| positive regulation of GTPase activity | GO:0043547 | | 8.466E-06 | 2.434E-03 |
|---|
| regulation of phosphoprotein phosphatase activity | GO:0043666 | | 8.466E-06 | 2.163E-03 |
|---|
| regulation of stress fiber formation | GO:0051492 | | 8.466E-06 | 1.947E-03 |
|---|
| interphase of mitotic cell cycle | GO:0051329 | | 9.451E-06 | 1.976E-03 |
|---|
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 8.007E-09 | 1.842E-05 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 1.152E-06 | 1.325E-03 |
|---|
| negative regulation of protein ubiquitination | GO:0031397 | | 2.354E-06 | 1.805E-03 |
|---|
| positive regulation of Rho GTPase activity | GO:0032321 | | 2.354E-06 | 1.354E-03 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 4.941E-06 | 2.273E-03 |
|---|
| regulation of focal adhesion formation | GO:0051893 | | 4.941E-06 | 1.894E-03 |
|---|
| positive regulation of Ras GTPase activity | GO:0032320 | | 6.586E-06 | 2.164E-03 |
|---|
| positive regulation of GTPase activity | GO:0043547 | | 8.466E-06 | 2.434E-03 |
|---|
| regulation of phosphoprotein phosphatase activity | GO:0043666 | | 8.466E-06 | 2.163E-03 |
|---|
| regulation of stress fiber formation | GO:0051492 | | 8.466E-06 | 1.947E-03 |
|---|
| interphase of mitotic cell cycle | GO:0051329 | | 9.451E-06 | 1.976E-03 |
|---|
