Study run-b1
Study informations
127 subnetworks in total page | file
236 genes associated page | file
Enriched GO terms page
General informations
General Index page
Study Index page
Subnetwork 1017-0-real
score
| Dataset | Score | P-val 1 | P-val 2 | P-val 3 |
|---|
| Desmedt | 0.2125 | 1.469e-02 | 5.461e-03 | 7.893e-02 |
|---|
| IPC-NIBC-129 | 0.2233 | 1.191e-01 | 1.070e-01 | 4.922e-01 |
|---|
| Ivshina_GPL96-GPL97 | 0.2284 | 2.025e-02 | 1.394e-02 | 2.264e-01 |
|---|
| Loi_GPL570 | 0.2038 | 1.377e-01 | 1.680e-01 | 4.720e-01 |
|---|
| Loi_GPL96-GPL97 | 0.1666 | 1.858e-03 | 4.990e-04 | 1.420e-02 |
|---|
| Pawitan_GPL96-GPL97 | 0.3121 | 5.695e-02 | 2.644e-02 | 3.396e-01 |
|---|
| Schmidt | 0.1860 | 9.915e-03 | 1.077e-02 | 7.194e-02 |
|---|
| Sotiriou | 0.3283 | 1.087e-01 | 4.717e-02 | 5.952e-01 |
|---|
| Wang | 0.1518 | 1.088e-01 | 9.347e-02 | 3.202e-01 |
|---|
| Zhang | 0.3063 | 8.787e-03 | 4.406e-03 | 4.205e-02 |
|---|
Expression data for subnetwork 1017-0-real in each dataset
Desmedt |
IPC-NIBC-129 |
Ivshina_GPL96-GPL97 |
Loi_GPL570 |
Loi_GPL96-GPL97 |
Pawitan_GPL96-GPL97 |
Schmidt |
Sotiriou |
Wang |
Zhang |
Subnetwork structure for each dataset
- Desmedt
Score for each gene in subnetwork 1017-0-real in each dataset
| Gene Symbol | Links | Frequency | Frequency Rank | Subnetwork score rank | Global rank |
Desmedt | IPC-NIBC-129 | Ivshina_GPL96-GPL97 | Loi_GPL570 | Loi_GPL96-GPL97 | Pawitan_GPL96-GPL97 | Schmidt | Sotiriou | Wang | Zhang |
|---|
| cdkn3 |   | 18 | 9 | 26 | 16 | 0.114 | 0.269 | 0.199 | 0.136 | 0.193 | 0.323 | 0.186 | 0.198 | 0.134 | 0.271 |
|---|
| tsc1 | | 31 | 5 | 26 | 15 | 0.049 | 0.012 | -0.055 | 0.072 | 0.055 | -0.196 | 0.006 | 0.010 | 0.043 | -0.007 |
|---|
| cdc2 | | 99 | 1 | 1 | 1 | 0.073 | 0.247 | 0.206 | 0.172 | 0.247 | 0.282 | 0.226 | 0.221 | 0.067 | 0.297 |
|---|
| stmn2 | | 19 | 8 | 32 | 18 | 0.057 | 0.106 | 0.005 | 0.052 | 0.110 | 0.006 | 0.034 | 0.103 | 0.075 | 0.113 |
|---|
| cdk2 | | 3 | 39 | 104 | 93 | 0.102 | 0.241 | 0.092 | 0.008 | 0.100 | 0.236 | 0.154 | 0.122 | 0.186 | 0.046 |
|---|
| brca1 | | 5 | 20 | 104 | 78 | 0.192 | 0.052 | 0.112 | 0.022 | 0.125 | 0.113 | 0.077 | 0.168 | 0.155 | 0.064 |
|---|
| ccnd1 | | 97 | 2 | 8 | 2 | 0.127 | -0.183 | 0.062 | 0.190 | 0.157 | 0.105 | -0.107 | 0.174 | 0.106 | 0.144 |
|---|
GO Enrichment output for subnetwork 1017-0-real in each dataset
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of protein ubiquitination | GO:0031396 |  | 1.119E-07 | 2.574E-04 |
|---|
| interphase of mitotic cell cycle | GO:0051329 | | 2.622E-07 | 3.015E-04 |
|---|
| interphase | GO:0051325 | | 2.877E-07 | 2.206E-04 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 3.003E-06 | 1.727E-03 |
|---|
| negative regulation of protein ubiquitination | GO:0031397 | | 4.314E-06 | 1.985E-03 |
|---|
| traversing start control point of mitotic cell cycle | GO:0007089 | | 4.314E-06 | 1.654E-03 |
|---|
| regulation of centrosome cycle | GO:0046605 | | 4.314E-06 | 1.418E-03 |
|---|
| positive regulation of Rho GTPase activity | GO:0032321 | | 4.314E-06 | 1.24E-03 |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 5.051E-06 | 1.291E-03 |
|---|
| positive regulation of protein ubiquitination | GO:0031398 | | 6.469E-06 | 1.488E-03 |
|---|
| positive regulation of DNA repair | GO:0045739 | | 6.469E-06 | 1.353E-03 |
|---|
IPC-NIBC-129 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of protein ubiquitination | GO:0031396 | | 2.716E-08 | 6.634E-05 |
|---|
| interphase of mitotic cell cycle | GO:0051329 | | 5.324E-08 | 6.503E-05 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 7.31E-07 | 5.953E-04 |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 1.405E-06 | 8.584E-04 |
|---|
| negative regulation of protein ubiquitination | GO:0031397 | | 1.44E-06 | 7.034E-04 |
|---|
| regulation of centrosome cycle | GO:0046605 | | 1.44E-06 | 5.862E-04 |
|---|
| positive regulation of DNA repair | GO:0045739 | | 2.159E-06 | 7.535E-04 |
|---|
| traversing start control point of mitotic cell cycle | GO:0007089 | | 2.159E-06 | 6.593E-04 |
|---|
| DNA damage response. signal transduction resulting in transcription | GO:0042772 | | 2.159E-06 | 5.86E-04 |
|---|
| activation of Ras GTPase activity | GO:0032856 | | 2.159E-06 | 5.274E-04 |
|---|
| positive regulation of protein ubiquitination | GO:0031398 | | 3.022E-06 | 6.711E-04 |
|---|
Ivshina_GPL96-GPL97 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of protein ubiquitination | GO:0031396 | | 3.507E-08 | 8.437E-05 |
|---|
| interphase of mitotic cell cycle | GO:0051329 | | 6.498E-08 | 7.818E-05 |
|---|
| interphase | GO:0051325 | | 7.368E-08 | 5.909E-05 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 9.435E-07 | 5.675E-04 |
|---|
| negative regulation of protein ubiquitination | GO:0031397 | | 1.719E-06 | 8.27E-04 |
|---|
| traversing start control point of mitotic cell cycle | GO:0007089 | | 1.719E-06 | 6.892E-04 |
|---|
| regulation of centrosome cycle | GO:0046605 | | 1.719E-06 | 5.907E-04 |
|---|
| activation of Ras GTPase activity | GO:0032856 | | 1.719E-06 | 5.169E-04 |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 1.814E-06 | 4.849E-04 |
|---|
| positive regulation of DNA repair | GO:0045739 | | 2.577E-06 | 6.201E-04 |
|---|
| DNA damage response. signal transduction resulting in transcription | GO:0042772 | | 2.577E-06 | 5.638E-04 |
|---|
Loi_GPL570 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of protein ubiquitination | GO:0031396 | | 2.716E-08 | 6.634E-05 |
|---|
| interphase of mitotic cell cycle | GO:0051329 | | 5.324E-08 | 6.503E-05 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 7.31E-07 | 5.953E-04 |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 1.405E-06 | 8.584E-04 |
|---|
| negative regulation of protein ubiquitination | GO:0031397 | | 1.44E-06 | 7.034E-04 |
|---|
| regulation of centrosome cycle | GO:0046605 | | 1.44E-06 | 5.862E-04 |
|---|
| positive regulation of DNA repair | GO:0045739 | | 2.159E-06 | 7.535E-04 |
|---|
| traversing start control point of mitotic cell cycle | GO:0007089 | | 2.159E-06 | 6.593E-04 |
|---|
| DNA damage response. signal transduction resulting in transcription | GO:0042772 | | 2.159E-06 | 5.86E-04 |
|---|
| activation of Ras GTPase activity | GO:0032856 | | 2.159E-06 | 5.274E-04 |
|---|
| positive regulation of protein ubiquitination | GO:0031398 | | 3.022E-06 | 6.711E-04 |
|---|
Loi_GPL96-GPL97 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of protein ubiquitination | GO:0031396 | | 3.507E-08 | 8.437E-05 |
|---|
| interphase of mitotic cell cycle | GO:0051329 | | 6.498E-08 | 7.818E-05 |
|---|
| interphase | GO:0051325 | | 7.368E-08 | 5.909E-05 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 9.435E-07 | 5.675E-04 |
|---|
| negative regulation of protein ubiquitination | GO:0031397 | | 1.719E-06 | 8.27E-04 |
|---|
| traversing start control point of mitotic cell cycle | GO:0007089 | | 1.719E-06 | 6.892E-04 |
|---|
| regulation of centrosome cycle | GO:0046605 | | 1.719E-06 | 5.907E-04 |
|---|
| activation of Ras GTPase activity | GO:0032856 | | 1.719E-06 | 5.169E-04 |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 1.814E-06 | 4.849E-04 |
|---|
| positive regulation of DNA repair | GO:0045739 | | 2.577E-06 | 6.201E-04 |
|---|
| DNA damage response. signal transduction resulting in transcription | GO:0042772 | | 2.577E-06 | 5.638E-04 |
|---|
Pawitan_GPL96-GPL97 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of protein ubiquitination | GO:0031396 | | 3.507E-08 | 8.437E-05 |
|---|
| interphase of mitotic cell cycle | GO:0051329 | | 6.498E-08 | 7.818E-05 |
|---|
| interphase | GO:0051325 | | 7.368E-08 | 5.909E-05 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 9.435E-07 | 5.675E-04 |
|---|
| negative regulation of protein ubiquitination | GO:0031397 | | 1.719E-06 | 8.27E-04 |
|---|
| traversing start control point of mitotic cell cycle | GO:0007089 | | 1.719E-06 | 6.892E-04 |
|---|
| regulation of centrosome cycle | GO:0046605 | | 1.719E-06 | 5.907E-04 |
|---|
| activation of Ras GTPase activity | GO:0032856 | | 1.719E-06 | 5.169E-04 |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 1.814E-06 | 4.849E-04 |
|---|
| positive regulation of DNA repair | GO:0045739 | | 2.577E-06 | 6.201E-04 |
|---|
| DNA damage response. signal transduction resulting in transcription | GO:0042772 | | 2.577E-06 | 5.638E-04 |
|---|
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of protein ubiquitination | GO:0031396 | | 1.119E-07 | 2.574E-04 |
|---|
| interphase of mitotic cell cycle | GO:0051329 | | 2.622E-07 | 3.015E-04 |
|---|
| interphase | GO:0051325 | | 2.877E-07 | 2.206E-04 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 3.003E-06 | 1.727E-03 |
|---|
| negative regulation of protein ubiquitination | GO:0031397 | | 4.314E-06 | 1.985E-03 |
|---|
| traversing start control point of mitotic cell cycle | GO:0007089 | | 4.314E-06 | 1.654E-03 |
|---|
| regulation of centrosome cycle | GO:0046605 | | 4.314E-06 | 1.418E-03 |
|---|
| positive regulation of Rho GTPase activity | GO:0032321 | | 4.314E-06 | 1.24E-03 |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 5.051E-06 | 1.291E-03 |
|---|
| positive regulation of protein ubiquitination | GO:0031398 | | 6.469E-06 | 1.488E-03 |
|---|
| positive regulation of DNA repair | GO:0045739 | | 6.469E-06 | 1.353E-03 |
|---|
Sotiriou file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of protein ubiquitination | GO:0031396 | | 1.119E-07 | 2.574E-04 |
|---|
| interphase of mitotic cell cycle | GO:0051329 | | 2.622E-07 | 3.015E-04 |
|---|
| interphase | GO:0051325 | | 2.877E-07 | 2.206E-04 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 3.003E-06 | 1.727E-03 |
|---|
| negative regulation of protein ubiquitination | GO:0031397 | | 4.314E-06 | 1.985E-03 |
|---|
| traversing start control point of mitotic cell cycle | GO:0007089 | | 4.314E-06 | 1.654E-03 |
|---|
| regulation of centrosome cycle | GO:0046605 | | 4.314E-06 | 1.418E-03 |
|---|
| positive regulation of Rho GTPase activity | GO:0032321 | | 4.314E-06 | 1.24E-03 |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 5.051E-06 | 1.291E-03 |
|---|
| positive regulation of protein ubiquitination | GO:0031398 | | 6.469E-06 | 1.488E-03 |
|---|
| positive regulation of DNA repair | GO:0045739 | | 6.469E-06 | 1.353E-03 |
|---|
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of protein ubiquitination | GO:0031396 | | 1.119E-07 | 2.574E-04 |
|---|
| interphase of mitotic cell cycle | GO:0051329 | | 2.622E-07 | 3.015E-04 |
|---|
| interphase | GO:0051325 | | 2.877E-07 | 2.206E-04 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 3.003E-06 | 1.727E-03 |
|---|
| negative regulation of protein ubiquitination | GO:0031397 | | 4.314E-06 | 1.985E-03 |
|---|
| traversing start control point of mitotic cell cycle | GO:0007089 | | 4.314E-06 | 1.654E-03 |
|---|
| regulation of centrosome cycle | GO:0046605 | | 4.314E-06 | 1.418E-03 |
|---|
| positive regulation of Rho GTPase activity | GO:0032321 | | 4.314E-06 | 1.24E-03 |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 5.051E-06 | 1.291E-03 |
|---|
| positive regulation of protein ubiquitination | GO:0031398 | | 6.469E-06 | 1.488E-03 |
|---|
| positive regulation of DNA repair | GO:0045739 | | 6.469E-06 | 1.353E-03 |
|---|
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of protein ubiquitination | GO:0031396 | | 1.119E-07 | 2.574E-04 |
|---|
| interphase of mitotic cell cycle | GO:0051329 | | 2.622E-07 | 3.015E-04 |
|---|
| interphase | GO:0051325 | | 2.877E-07 | 2.206E-04 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 3.003E-06 | 1.727E-03 |
|---|
| negative regulation of protein ubiquitination | GO:0031397 | | 4.314E-06 | 1.985E-03 |
|---|
| traversing start control point of mitotic cell cycle | GO:0007089 | | 4.314E-06 | 1.654E-03 |
|---|
| regulation of centrosome cycle | GO:0046605 | | 4.314E-06 | 1.418E-03 |
|---|
| positive regulation of Rho GTPase activity | GO:0032321 | | 4.314E-06 | 1.24E-03 |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 5.051E-06 | 1.291E-03 |
|---|
| positive regulation of protein ubiquitination | GO:0031398 | | 6.469E-06 | 1.488E-03 |
|---|
| positive regulation of DNA repair | GO:0045739 | | 6.469E-06 | 1.353E-03 |
|---|
