Study run-a2
Study informations
103 subnetworks in total page | file
306 genes associated page | file
Enriched GO terms page
General informations
General Index page
Study Index page
Subnetwork 9612-11-real
score
| Dataset | Score | P-val 1 | P-val 2 | P-val 3 |
|---|
| Desmedt | 0.2109 | 1.253e-02 | 9.676e-03 | 1.042e-01 |
|---|
| IPC-NIBC-129 | 0.2545 | 2.042e-02 | 3.043e-02 | 2.364e-01 |
|---|
| Ivshina_GPL96-GPL97 | 0.2389 | 5.179e-03 | 9.118e-03 | 1.869e-01 |
|---|
| Loi_GPL570 | 0.2500 | 5.858e-02 | 6.636e-02 | 2.475e-01 |
|---|
| Loi_GPL96-GPL97 | 0.1610 | 2.000e-06 | 2.300e-05 | 4.000e-06 |
|---|
| Parker_GPL1390 | 0.2700 | 8.080e-02 | 9.807e-02 | 5.060e-01 |
|---|
| Parker_GPL887 | 0.0166 | 3.362e-01 | 3.548e-01 | 3.632e-01 |
|---|
| Pawitan_GPL96-GPL97 | 0.3578 | 9.623e-01 | 9.527e-01 | 1.000e+00 |
|---|
| Schmidt | 0.2092 | 2.575e-02 | 3.029e-02 | 2.767e-01 |
|---|
| Sotiriou | 0.3166 | 1.128e-02 | 8.659e-03 | 2.018e-01 |
|---|
| Van-De-Vijver | 0.3217 | 1.816e-03 | 2.611e-03 | 8.693e-02 |
|---|
| Zhang | 0.2553 | 1.323e-01 | 8.649e-02 | 2.775e-01 |
|---|
| Zhou | 0.3869 | 6.780e-02 | 5.629e-02 | 3.973e-01 |
|---|
Expression data for subnetwork 9612-11-real in each dataset
Desmedt |
IPC-NIBC-129 |
Ivshina_GPL96-GPL97 |
Loi_GPL570 |
Loi_GPL96-GPL97 |
Parker_GPL1390 |
Parker_GPL887 |
Pawitan_GPL96-GPL97 |
Schmidt |
Sotiriou |
Van-De-Vijver |
Zhang |
Zhou |
Subnetwork structure for each dataset
- Desmedt
Score for each gene in subnetwork 9612-11-real in each dataset
| Gene Symbol | Links | Frequency | Frequency Rank | Subnetwork score rank | Global rank |
Desmedt | IPC-NIBC-129 | Ivshina_GPL96-GPL97 | Loi_GPL570 | Loi_GPL96-GPL97 | Parker_GPL1390 | Parker_GPL887 | Pawitan_GPL96-GPL97 | Schmidt | Sotiriou | Van-De-Vijver | Zhang | Zhou |
|---|
| cdkn3 |   | 53 | 5 | 29 | 22 | 0.114 | 0.269 | 0.199 | 0.136 | 0.193 | 0.166 | -0.009 | 0.323 | 0.186 | 0.198 | 0.201 | 0.271 | 0.372 |
|---|
| pcna | | 15 | 11 | 110 | 85 | 0.096 | 0.202 | 0.109 | 0.180 | 0.118 | 0.119 | 0.104 | 0.256 | 0.151 | 0.059 | 0.201 | 0.123 | 0.233 |
|---|
| fen1 | | 9 | 22 | 133 | 112 | 0.045 | 0.194 | 0.169 | 0.196 | 0.136 | 0.252 | 0.033 | 0.332 | 0.221 | 0.144 | 0.242 | 0.056 | 0.114 |
|---|
| stmn2 | | 29 | 9 | 34 | 27 | 0.057 | 0.106 | 0.005 | 0.052 | 0.110 | 0.071 | -0.099 | 0.006 | 0.034 | 0.103 | 0.008 | 0.113 | -0.039 |
|---|
| mybl2 | | 9 | 22 | 56 | 48 | 0.162 | 0.237 | 0.166 | 0.079 | 0.124 | 0.184 | 0.333 | 0.275 | 0.202 | 0.182 | 0.289 | 0.074 | 0.245 |
|---|
| ccnd1 | | 92 | 2 | 18 | 12 | 0.127 | -0.183 | 0.062 | 0.190 | 0.157 | -0.002 | -0.190 | 0.105 | -0.107 | 0.174 | undef | 0.144 | 0.290 |
|---|
| ncor2 | | 1 | 116 | 206 | 216 | 0.070 | -0.106 | 0.016 | -0.051 | 0.086 | 0.082 | -0.216 | -0.175 | -0.101 | 0.107 | 0.184 | -0.104 | 0.127 |
|---|
| tsc1 | | 58 | 4 | 18 | 13 | 0.049 | 0.012 | -0.055 | 0.072 | 0.055 | -0.144 | -0.242 | -0.196 | 0.006 | 0.010 | 0.095 | -0.007 | 0.207 |
|---|
| cdc2 | | 96 | 1 | 1 | 1 | 0.073 | 0.247 | 0.206 | 0.172 | 0.247 | 0.153 | -0.131 | 0.282 | 0.226 | 0.221 | 0.162 | 0.297 | 0.336 |
|---|
| sfn | | 61 | 3 | 1 | 2 | 0.077 | 0.137 | 0.111 | 0.172 | 0.112 | 0.119 | 0.141 | 0.219 | 0.100 | 0.147 | 0.158 | 0.079 | 0.181 |
|---|
GO Enrichment output for subnetwork 9612-11-real in each dataset
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 |  | 1.487E-07 | 3.419E-04 |
|---|
| negative regulation of protein ubiquitination | GO:0031397 | | 8.885E-06 | 0.01021795 |
|---|
| positive regulation of Rho GTPase activity | GO:0032321 | | 8.885E-06 | 6.812E-03 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 9.202E-06 | 5.291E-03 |
|---|
| response to UV | GO:0009411 | | 1.13E-05 | 5.197E-03 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 1.864E-05 | 7.144E-03 |
|---|
| regulation of focal adhesion formation | GO:0051893 | | 1.864E-05 | 6.124E-03 |
|---|
| keratinocyte proliferation | GO:0043616 | | 2.484E-05 | 7.14E-03 |
|---|
| positive regulation of Ras GTPase activity | GO:0032320 | | 2.484E-05 | 6.347E-03 |
|---|
| positive regulation of GTPase activity | GO:0043547 | | 3.191E-05 | 7.34E-03 |
|---|
| regulation of phosphoprotein phosphatase activity | GO:0043666 | | 3.191E-05 | 6.673E-03 |
|---|
IPC-NIBC-129 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 3.484E-08 | 8.511E-05 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 2.654E-06 | 3.242E-03 |
|---|
| negative regulation of protein ubiquitination | GO:0031397 | | 3.321E-06 | 2.704E-03 |
|---|
| response to UV | GO:0009411 | | 4.571E-06 | 2.792E-03 |
|---|
| activation of Ras GTPase activity | GO:0032856 | | 4.98E-06 | 2.433E-03 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 9.289E-06 | 3.782E-03 |
|---|
| regulation of focal adhesion formation | GO:0051893 | | 9.289E-06 | 3.242E-03 |
|---|
| phosphoinositide-mediated signaling | GO:0048015 | | 1.168E-05 | 3.566E-03 |
|---|
| regulation of phosphoprotein phosphatase activity | GO:0043666 | | 1.194E-05 | 3.241E-03 |
|---|
| regulation of phosphatase activity | GO:0010921 | | 1.492E-05 | 3.644E-03 |
|---|
| regulation of stress fiber formation | GO:0051492 | | 1.492E-05 | 3.313E-03 |
|---|
Ivshina_GPL96-GPL97 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 4.374E-08 | 1.052E-04 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 3.176E-06 | 3.821E-03 |
|---|
| negative regulation of protein ubiquitination | GO:0031397 | | 3.766E-06 | 3.021E-03 |
|---|
| activation of Ras GTPase activity | GO:0032856 | | 3.766E-06 | 2.265E-03 |
|---|
| response to UV | GO:0009411 | | 4.888E-06 | 2.352E-03 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 1.053E-05 | 4.224E-03 |
|---|
| regulation of focal adhesion formation | GO:0051893 | | 1.053E-05 | 3.621E-03 |
|---|
| keratinocyte proliferation | GO:0043616 | | 1.354E-05 | 4.072E-03 |
|---|
| regulation of phosphoprotein phosphatase activity | GO:0043666 | | 1.354E-05 | 3.619E-03 |
|---|
| phosphoinositide-mediated signaling | GO:0048015 | | 1.397E-05 | 3.36E-03 |
|---|
| regulation of phosphatase activity | GO:0010921 | | 1.692E-05 | 3.7E-03 |
|---|
Loi_GPL570 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 3.484E-08 | 8.511E-05 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 2.654E-06 | 3.242E-03 |
|---|
| negative regulation of protein ubiquitination | GO:0031397 | | 3.321E-06 | 2.704E-03 |
|---|
| response to UV | GO:0009411 | | 4.571E-06 | 2.792E-03 |
|---|
| activation of Ras GTPase activity | GO:0032856 | | 4.98E-06 | 2.433E-03 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 9.289E-06 | 3.782E-03 |
|---|
| regulation of focal adhesion formation | GO:0051893 | | 9.289E-06 | 3.242E-03 |
|---|
| phosphoinositide-mediated signaling | GO:0048015 | | 1.168E-05 | 3.566E-03 |
|---|
| regulation of phosphoprotein phosphatase activity | GO:0043666 | | 1.194E-05 | 3.241E-03 |
|---|
| regulation of phosphatase activity | GO:0010921 | | 1.492E-05 | 3.644E-03 |
|---|
| regulation of stress fiber formation | GO:0051492 | | 1.492E-05 | 3.313E-03 |
|---|
Loi_GPL96-GPL97 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 4.374E-08 | 1.052E-04 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 3.176E-06 | 3.821E-03 |
|---|
| negative regulation of protein ubiquitination | GO:0031397 | | 3.766E-06 | 3.021E-03 |
|---|
| activation of Ras GTPase activity | GO:0032856 | | 3.766E-06 | 2.265E-03 |
|---|
| response to UV | GO:0009411 | | 4.888E-06 | 2.352E-03 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 1.053E-05 | 4.224E-03 |
|---|
| regulation of focal adhesion formation | GO:0051893 | | 1.053E-05 | 3.621E-03 |
|---|
| keratinocyte proliferation | GO:0043616 | | 1.354E-05 | 4.072E-03 |
|---|
| regulation of phosphoprotein phosphatase activity | GO:0043666 | | 1.354E-05 | 3.619E-03 |
|---|
| phosphoinositide-mediated signaling | GO:0048015 | | 1.397E-05 | 3.36E-03 |
|---|
| regulation of phosphatase activity | GO:0010921 | | 1.692E-05 | 3.7E-03 |
|---|
Parker_GPL1390 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| cyclin-dependent protein kinase holoenzyme complex | GO:0000307 | | 8.812E-09 | 3.147E-05 |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 1.46E-08 | 2.607E-05 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 2.361E-06 | 2.811E-03 |
|---|
| response to UV | GO:0009411 | | 2.863E-06 | 2.556E-03 |
|---|
| MutLalpha complex binding | GO:0032405 | | 3.314E-06 | 2.367E-03 |
|---|
| ribonuclease H activity | GO:0004523 | | 3.314E-06 | 1.972E-03 |
|---|
| endodeoxyribonuclease activity. producing 5'-phosphomonoesters | GO:0016888 | | 3.314E-06 | 1.69E-03 |
|---|
| negative regulation of protein ubiquitination | GO:0031397 | | 3.314E-06 | 1.479E-03 |
|---|
| 5'-3' exonuclease activity | GO:0008409 | | 3.314E-06 | 1.315E-03 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 4.969E-06 | 1.774E-03 |
|---|
| DNA replication factor C complex | GO:0005663 | | 4.969E-06 | 1.613E-03 |
|---|
Parker_GPL887 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| cyclin-dependent protein kinase holoenzyme complex | GO:0000307 | | 8.439E-09 | 3.078E-05 |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 1.59E-08 | 2.899E-05 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 1.839E-06 | 2.236E-03 |
|---|
| response to UV | GO:0009411 | | 2.113E-06 | 1.927E-03 |
|---|
| ribonuclease H activity | GO:0004523 | | 3.136E-06 | 2.288E-03 |
|---|
| endodeoxyribonuclease activity. producing 5'-phosphomonoesters | GO:0016888 | | 3.136E-06 | 1.907E-03 |
|---|
| positive regulation of cell-matrix adhesion | GO:0001954 | | 3.136E-06 | 1.634E-03 |
|---|
| 5'-3' exonuclease activity | GO:0008409 | | 3.136E-06 | 1.43E-03 |
|---|
| RNA polymerase II carboxy-terminal domain kinase activity | GO:0008353 | | 3.136E-06 | 1.271E-03 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 4.703E-06 | 1.716E-03 |
|---|
| MutLalpha complex binding | GO:0032405 | | 4.703E-06 | 1.56E-03 |
|---|
Pawitan_GPL96-GPL97 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 4.374E-08 | 1.052E-04 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 3.176E-06 | 3.821E-03 |
|---|
| negative regulation of protein ubiquitination | GO:0031397 | | 3.766E-06 | 3.021E-03 |
|---|
| activation of Ras GTPase activity | GO:0032856 | | 3.766E-06 | 2.265E-03 |
|---|
| response to UV | GO:0009411 | | 4.888E-06 | 2.352E-03 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 1.053E-05 | 4.224E-03 |
|---|
| regulation of focal adhesion formation | GO:0051893 | | 1.053E-05 | 3.621E-03 |
|---|
| keratinocyte proliferation | GO:0043616 | | 1.354E-05 | 4.072E-03 |
|---|
| regulation of phosphoprotein phosphatase activity | GO:0043666 | | 1.354E-05 | 3.619E-03 |
|---|
| phosphoinositide-mediated signaling | GO:0048015 | | 1.397E-05 | 3.36E-03 |
|---|
| regulation of phosphatase activity | GO:0010921 | | 1.692E-05 | 3.7E-03 |
|---|
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 1.487E-07 | 3.419E-04 |
|---|
| negative regulation of protein ubiquitination | GO:0031397 | | 8.885E-06 | 0.01021795 |
|---|
| positive regulation of Rho GTPase activity | GO:0032321 | | 8.885E-06 | 6.812E-03 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 9.202E-06 | 5.291E-03 |
|---|
| response to UV | GO:0009411 | | 1.13E-05 | 5.197E-03 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 1.864E-05 | 7.144E-03 |
|---|
| regulation of focal adhesion formation | GO:0051893 | | 1.864E-05 | 6.124E-03 |
|---|
| keratinocyte proliferation | GO:0043616 | | 2.484E-05 | 7.14E-03 |
|---|
| positive regulation of Ras GTPase activity | GO:0032320 | | 2.484E-05 | 6.347E-03 |
|---|
| positive regulation of GTPase activity | GO:0043547 | | 3.191E-05 | 7.34E-03 |
|---|
| regulation of phosphoprotein phosphatase activity | GO:0043666 | | 3.191E-05 | 6.673E-03 |
|---|
Sotiriou file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 1.487E-07 | 3.419E-04 |
|---|
| negative regulation of protein ubiquitination | GO:0031397 | | 8.885E-06 | 0.01021795 |
|---|
| positive regulation of Rho GTPase activity | GO:0032321 | | 8.885E-06 | 6.812E-03 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 9.202E-06 | 5.291E-03 |
|---|
| response to UV | GO:0009411 | | 1.13E-05 | 5.197E-03 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 1.864E-05 | 7.144E-03 |
|---|
| regulation of focal adhesion formation | GO:0051893 | | 1.864E-05 | 6.124E-03 |
|---|
| keratinocyte proliferation | GO:0043616 | | 2.484E-05 | 7.14E-03 |
|---|
| positive regulation of Ras GTPase activity | GO:0032320 | | 2.484E-05 | 6.347E-03 |
|---|
| positive regulation of GTPase activity | GO:0043547 | | 3.191E-05 | 7.34E-03 |
|---|
| regulation of phosphoprotein phosphatase activity | GO:0043666 | | 3.191E-05 | 6.673E-03 |
|---|
Van-De-Vijver file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| phosphoinositide-mediated signaling | GO:0048015 | | 1.431E-05 | 0.02638188 |
|---|
| positive regulation of cell growth | GO:0030307 | | 1.771E-05 | 0.01631737 |
|---|
| regulation of focal adhesion formation | GO:0051893 | | 1.771E-05 | 0.01087825 |
|---|
| regulation of Rho GTPase activity | GO:0032319 | | 1.771E-05 | 8.159E-03 |
|---|
| positive regulation of Ras GTPase activity | GO:0032320 | | 1.771E-05 | 6.527E-03 |
|---|
| positive regulation of GTPase activity | GO:0043547 | | 2.478E-05 | 7.61E-03 |
|---|
| keratinocyte proliferation | GO:0043616 | | 2.478E-05 | 6.523E-03 |
|---|
| UV protection | GO:0009650 | | 2.478E-05 | 5.708E-03 |
|---|
| regulation of stress fiber formation | GO:0051492 | | 3.302E-05 | 6.761E-03 |
|---|
| release of cytochrome c from mitochondria | GO:0001836 | | 3.302E-05 | 6.085E-03 |
|---|
| positive regulation of cell size | GO:0045793 | | 4.242E-05 | 7.108E-03 |
|---|
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 1.487E-07 | 3.419E-04 |
|---|
| negative regulation of protein ubiquitination | GO:0031397 | | 8.885E-06 | 0.01021795 |
|---|
| positive regulation of Rho GTPase activity | GO:0032321 | | 8.885E-06 | 6.812E-03 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 9.202E-06 | 5.291E-03 |
|---|
| response to UV | GO:0009411 | | 1.13E-05 | 5.197E-03 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 1.864E-05 | 7.144E-03 |
|---|
| regulation of focal adhesion formation | GO:0051893 | | 1.864E-05 | 6.124E-03 |
|---|
| keratinocyte proliferation | GO:0043616 | | 2.484E-05 | 7.14E-03 |
|---|
| positive regulation of Ras GTPase activity | GO:0032320 | | 2.484E-05 | 6.347E-03 |
|---|
| positive regulation of GTPase activity | GO:0043547 | | 3.191E-05 | 7.34E-03 |
|---|
| regulation of phosphoprotein phosphatase activity | GO:0043666 | | 3.191E-05 | 6.673E-03 |
|---|
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 2.109E-07 | 5.006E-04 |
|---|
| negative regulation of protein ubiquitination | GO:0031397 | | 9.59E-06 | 0.01137901 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 1.122E-05 | 8.874E-03 |
|---|
| response to UV | GO:0009411 | | 1.371E-05 | 8.133E-03 |
|---|
| positive regulation of Rho GTPase activity | GO:0032321 | | 1.438E-05 | 6.823E-03 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 2.012E-05 | 7.956E-03 |
|---|
| keratinocyte proliferation | GO:0043616 | | 2.68E-05 | 9.087E-03 |
|---|
| regulation of focal adhesion formation | GO:0051893 | | 2.68E-05 | 7.951E-03 |
|---|
| regulation of phosphoprotein phosphatase activity | GO:0043666 | | 4.303E-05 | 0.01134473 |
|---|
| regulation of stress fiber formation | GO:0051492 | | 4.303E-05 | 0.01021025 |
|---|
| UV protection | GO:0009650 | | 4.303E-05 | 9.282E-03 |
|---|
