Study run-a2

Study informations

103 subnetworks in total page | file

306 genes associated page | file

Enriched GO terms page

General informations

General Index page

Study Index page

Subnetwork 8893-10-real

score

Dataset	Score	P-val 1	P-val 2	P-val 3
Desmedt	0.1864	7.747e-03	5.605e-03	7.103e-02
IPC-NIBC-129	0.2304	5.250e-02	7.539e-02	4.587e-01
Ivshina_GPL96-GPL97	0.2622	1.398e-02	2.259e-02	3.260e-01
Loi_GPL570	0.3073	2.577e-02	2.982e-02	1.264e-01
Loi_GPL96-GPL97	0.1627	1.100e-05	9.900e-05	7.800e-05
Parker_GPL1390	0.2243	7.706e-02	9.375e-02	4.942e-01
Parker_GPL887	0.1064	3.907e-01	4.097e-01	4.304e-01
Pawitan_GPL96-GPL97	0.3787	5.117e-01	4.392e-01	9.695e-01
Schmidt	0.2126	2.813e-02	3.327e-02	2.930e-01
Sotiriou	0.3101	1.256e-02	9.677e-03	2.144e-01
Van-De-Vijver	0.2534	7.400e-04	1.064e-03	4.788e-02
Zhang	0.2499	1.289e-01	8.365e-02	2.715e-01
Zhou	0.4372	5.601e-02	4.386e-02	3.441e-01

Expression data for subnetwork 8893-10-real in each dataset

Desmedt | IPC-NIBC-129 | Ivshina_GPL96-GPL97 | Loi_GPL570 | Loi_GPL96-GPL97 | Parker_GPL1390 | Parker_GPL887 | Pawitan_GPL96-GPL97 | Schmidt | Sotiriou | Van-De-Vijver | Zhang | Zhou |

Subnetwork structure for each dataset

Desmedt IPC-NIBC-129 Ivshina_GPL96-GPL97 Loi_GPL570 Loi_GPL96-GPL97 Parker_GPL1390 Parker_GPL887 Pawitan_GPL96-GPL97 Schmidt Sotiriou Van-De-Vijver Zhang Zhou

Desmedt

Score for each gene in subnetwork 8893-10-real in each dataset

Gene Symbol	Links	Frequency	Frequency Rank	Subnetwork score rank	Global rank	Desmedt	IPC-NIBC-129	Ivshina_GPL96-GPL97	Loi_GPL570	Loi_GPL96-GPL97	Parker_GPL1390	Parker_GPL887	Pawitan_GPL96-GPL97	Schmidt	Sotiriou	Van-De-Vijver	Zhang	Zhou
cdkn3		53	5	29	22	0.114	0.269	0.199	0.136	0.193	0.166	-0.009	0.323	0.186	0.198	0.201	0.271	0.372
tbl3		2	78	120	117	0.068	-0.007	0.137	0.048	0.104	-0.071	0.518	0.154	0.067	0.128	undef	0.054	0.267
ccnd1		92	2	18	12	0.127	-0.183	0.062	0.190	0.157	-0.002	-0.190	0.105	-0.107	0.174	undef	0.144	0.290
eif2b5		1	116	169	174	-0.061	0.085	0.051	0.089	0.074	0.101	-0.001	-0.044	0.232	0.075	undef	0.204	0.253
tsc1		58	4	18	13	0.049	0.012	-0.055	0.072	0.055	-0.144	-0.242	-0.196	0.006	0.010	0.095	-0.007	0.207
eif2s2		1	116	169	174	0.047	0.182	0.120	0.289	0.053	0.162	0.224	0.359	0.085	0.074	0.093	-0.023	0.132
cdc2		96	1	1	1	0.073	0.247	0.206	0.172	0.247	0.153	-0.131	0.282	0.226	0.221	0.162	0.297	0.336
csnk2b		2	78	120	117	0.039	0.147	0.116	0.078	0.110	0.233	-0.494	0.221	0.113	0.028	0.096	-0.102	0.136
sfn		61	3	1	2	0.077	0.137	0.111	0.172	0.112	0.119	0.141	0.219	0.100	0.147	0.158	0.079	0.181

GO Enrichment output for subnetwork 8893-10-real in each dataset

Desmedt file

Name	Accession Number	Link	P-val	Corrected P-val
regulation of cyclin-dependent protein kinase activity	GO:0000079		3.125E-08	7.188E-05
negative regulation of translation	GO:0017148		1.377E-07	1.583E-04
G1/S transition of mitotic cell cycle	GO:0000082		3.003E-06	2.302E-03
negative regulation of protein ubiquitination	GO:0031397		4.314E-06	2.481E-03
positive regulation of Rho GTPase activity	GO:0032321		4.314E-06	1.985E-03
cGMP-mediated signaling	GO:0019934		6.469E-06	2.48E-03
negative regulation of translational initiation	GO:0045947		6.469E-06	2.126E-03
astrocyte development	GO:0014002		6.469E-06	1.86E-03
response to peptide hormone stimulus	GO:0043434		7.081E-06	1.81E-03
positive regulation of cyclin-dependent protein kinase activity	GO:0045737		9.053E-06	2.082E-03
regulation of focal adhesion formation	GO:0051893		9.053E-06	1.893E-03

IPC-NIBC-129 file

Name	Accession Number	Link	P-val	Corrected P-val
regulation of cyclin-dependent protein kinase activity	GO:0000079		8.003E-09	1.955E-05
negative regulation of translation	GO:0017148		6.901E-08	8.43E-05
G1/S transition of mitotic cell cycle	GO:0000082		9.129E-07	7.434E-04
negative regulation of protein ubiquitination	GO:0031397		1.661E-06	1.014E-03
cGMP-mediated signaling	GO:0019934		2.491E-06	1.217E-03
astrocyte development	GO:0014002		2.491E-06	1.014E-03
activation of Ras GTPase activity	GO:0032856		2.491E-06	8.693E-04
response to peptide hormone stimulus	GO:0043434		2.494E-06	7.617E-04
positive regulation of cyclin-dependent protein kinase activity	GO:0045737		4.648E-06	1.262E-03
astrocyte differentiation	GO:0048708		4.648E-06	1.135E-03
negative regulation of translational initiation	GO:0045947		4.648E-06	1.032E-03

Ivshina_GPL96-GPL97 file

Name	Accession Number	Link	P-val	Corrected P-val
regulation of cyclin-dependent protein kinase activity	GO:0000079		8.137E-09	1.958E-05
negative regulation of translation	GO:0017148		7.132E-08	8.579E-05
G1/S transition of mitotic cell cycle	GO:0000082		9.435E-07	7.567E-04
negative regulation of protein ubiquitination	GO:0031397		1.719E-06	1.034E-03
activation of Ras GTPase activity	GO:0032856		1.719E-06	8.27E-04
response to peptide hormone stimulus	GO:0043434		2.229E-06	8.937E-04
cGMP-mediated signaling	GO:0019934		2.577E-06	8.859E-04
astrocyte development	GO:0014002		2.577E-06	7.752E-04
positive regulation of cyclin-dependent protein kinase activity	GO:0045737		4.809E-06	1.286E-03
astrocyte differentiation	GO:0048708		4.809E-06	1.157E-03
negative regulation of translational initiation	GO:0045947		4.809E-06	1.052E-03

Loi_GPL570 file

Name	Accession Number	Link	P-val	Corrected P-val
regulation of cyclin-dependent protein kinase activity	GO:0000079		8.003E-09	1.955E-05
negative regulation of translation	GO:0017148		6.901E-08	8.43E-05
G1/S transition of mitotic cell cycle	GO:0000082		9.129E-07	7.434E-04
negative regulation of protein ubiquitination	GO:0031397		1.661E-06	1.014E-03
cGMP-mediated signaling	GO:0019934		2.491E-06	1.217E-03
astrocyte development	GO:0014002		2.491E-06	1.014E-03
activation of Ras GTPase activity	GO:0032856		2.491E-06	8.693E-04
response to peptide hormone stimulus	GO:0043434		2.494E-06	7.617E-04
positive regulation of cyclin-dependent protein kinase activity	GO:0045737		4.648E-06	1.262E-03
astrocyte differentiation	GO:0048708		4.648E-06	1.135E-03
negative regulation of translational initiation	GO:0045947		4.648E-06	1.032E-03

Loi_GPL96-GPL97 file

Name	Accession Number	Link	P-val	Corrected P-val
regulation of cyclin-dependent protein kinase activity	GO:0000079		8.137E-09	1.958E-05
negative regulation of translation	GO:0017148		7.132E-08	8.579E-05
G1/S transition of mitotic cell cycle	GO:0000082		9.435E-07	7.567E-04
negative regulation of protein ubiquitination	GO:0031397		1.719E-06	1.034E-03
activation of Ras GTPase activity	GO:0032856		1.719E-06	8.27E-04
response to peptide hormone stimulus	GO:0043434		2.229E-06	8.937E-04
cGMP-mediated signaling	GO:0019934		2.577E-06	8.859E-04
astrocyte development	GO:0014002		2.577E-06	7.752E-04
positive regulation of cyclin-dependent protein kinase activity	GO:0045737		4.809E-06	1.286E-03
astrocyte differentiation	GO:0048708		4.809E-06	1.157E-03
negative regulation of translational initiation	GO:0045947		4.809E-06	1.052E-03

Parker_GPL1390 file

Name	Accession Number	Link	P-val	Corrected P-val
regulation of cyclin-dependent protein kinase activity	GO:0000079		8.131E-09	2.904E-05
protein kinase regulator activity	GO:0019887		2.236E-08	3.993E-05
kinase regulator activity	GO:0019207		4.75E-08	5.654E-05
negative regulation of translation	GO:0017148		8.541E-08	7.625E-05
G1/S transition of mitotic cell cycle	GO:0000082		1.578E-06	1.127E-03
positive regulation of translational initiation	GO:0045948		2.578E-06	1.534E-03
negative regulation of protein ubiquitination	GO:0031397		2.578E-06	1.315E-03
small-subunit processome	GO:0032040		2.578E-06	1.151E-03
response to peptide hormone stimulus	GO:0043434		2.72E-06	1.079E-03
translation initiation factor activity	GO:0003743		3.197E-06	1.142E-03
positive regulation of cyclin-dependent protein kinase activity	GO:0045737		3.865E-06	1.255E-03

Parker_GPL887 file

Name	Accession Number	Link	P-val	Corrected P-val
regulation of cyclin-dependent protein kinase activity	GO:0000079		6.094E-09	2.223E-05
negative regulation of translation	GO:0017148		6.247E-08	1.14E-04
G1/S transition of mitotic cell cycle	GO:0000082		9.392E-07	1.142E-03
translation initiation factor activity	GO:0003743		1.991E-06	1.816E-03
positive regulation of translational initiation	GO:0045948		2.053E-06	1.498E-03
positive regulation of cell-matrix adhesion	GO:0001954		2.053E-06	1.248E-03
small-subunit processome	GO:0032040		2.053E-06	1.07E-03
RNA polymerase II carboxy-terminal domain kinase activity	GO:0008353		2.053E-06	9.362E-04
positive regulation of cyclin-dependent protein kinase activity	GO:0045737		3.079E-06	1.248E-03
eukaryotic translation initiation factor 2B complex	GO:0005851		3.079E-06	1.123E-03
negative regulation of translational initiation	GO:0045947		3.079E-06	1.021E-03

Pawitan_GPL96-GPL97 file

Name	Accession Number	Link	P-val	Corrected P-val
regulation of cyclin-dependent protein kinase activity	GO:0000079		8.137E-09	1.958E-05
negative regulation of translation	GO:0017148		7.132E-08	8.579E-05
G1/S transition of mitotic cell cycle	GO:0000082		9.435E-07	7.567E-04
negative regulation of protein ubiquitination	GO:0031397		1.719E-06	1.034E-03
activation of Ras GTPase activity	GO:0032856		1.719E-06	8.27E-04
response to peptide hormone stimulus	GO:0043434		2.229E-06	8.937E-04
cGMP-mediated signaling	GO:0019934		2.577E-06	8.859E-04
astrocyte development	GO:0014002		2.577E-06	7.752E-04
positive regulation of cyclin-dependent protein kinase activity	GO:0045737		4.809E-06	1.286E-03
astrocyte differentiation	GO:0048708		4.809E-06	1.157E-03
negative regulation of translational initiation	GO:0045947		4.809E-06	1.052E-03

Schmidt file

Name	Accession Number	Link	P-val	Corrected P-val
regulation of cyclin-dependent protein kinase activity	GO:0000079		3.125E-08	7.188E-05
negative regulation of translation	GO:0017148		1.377E-07	1.583E-04
G1/S transition of mitotic cell cycle	GO:0000082		3.003E-06	2.302E-03
negative regulation of protein ubiquitination	GO:0031397		4.314E-06	2.481E-03
positive regulation of Rho GTPase activity	GO:0032321		4.314E-06	1.985E-03
cGMP-mediated signaling	GO:0019934		6.469E-06	2.48E-03
negative regulation of translational initiation	GO:0045947		6.469E-06	2.126E-03
astrocyte development	GO:0014002		6.469E-06	1.86E-03
response to peptide hormone stimulus	GO:0043434		7.081E-06	1.81E-03
positive regulation of cyclin-dependent protein kinase activity	GO:0045737		9.053E-06	2.082E-03
regulation of focal adhesion formation	GO:0051893		9.053E-06	1.893E-03

Sotiriou file

Name	Accession Number	Link	P-val	Corrected P-val
regulation of cyclin-dependent protein kinase activity	GO:0000079		3.125E-08	7.188E-05
negative regulation of translation	GO:0017148		1.377E-07	1.583E-04
G1/S transition of mitotic cell cycle	GO:0000082		3.003E-06	2.302E-03
negative regulation of protein ubiquitination	GO:0031397		4.314E-06	2.481E-03
positive regulation of Rho GTPase activity	GO:0032321		4.314E-06	1.985E-03
cGMP-mediated signaling	GO:0019934		6.469E-06	2.48E-03
negative regulation of translational initiation	GO:0045947		6.469E-06	2.126E-03
astrocyte development	GO:0014002		6.469E-06	1.86E-03
response to peptide hormone stimulus	GO:0043434		7.081E-06	1.81E-03
positive regulation of cyclin-dependent protein kinase activity	GO:0045737		9.053E-06	2.082E-03
regulation of focal adhesion formation	GO:0051893		9.053E-06	1.893E-03

Van-De-Vijver file

Name	Accession Number	Link	P-val	Corrected P-val
positive regulation of cell growth	GO:0030307		6.331E-06	0.01166884
regulation of focal adhesion formation	GO:0051893		6.331E-06	5.834E-03
regulation of Rho GTPase activity	GO:0032319		6.331E-06	3.89E-03
positive regulation of Ras GTPase activity	GO:0032320		6.331E-06	2.917E-03
positive regulation of GTPase activity	GO:0043547		8.861E-06	3.266E-03
keratinocyte proliferation	GO:0043616		8.861E-06	2.722E-03
regulation of stress fiber formation	GO:0051492		1.181E-05	3.11E-03
release of cytochrome c from mitochondria	GO:0001836		1.181E-05	2.721E-03
positive regulation of cell size	GO:0045793		1.518E-05	3.109E-03
negative regulation of caspase activity	GO:0043154		1.518E-05	2.798E-03
regulation of dephosphorylation	GO:0035303		1.518E-05	2.544E-03

Zhang file

Name	Accession Number	Link	P-val	Corrected P-val
regulation of cyclin-dependent protein kinase activity	GO:0000079		3.125E-08	7.188E-05
negative regulation of translation	GO:0017148		1.377E-07	1.583E-04
G1/S transition of mitotic cell cycle	GO:0000082		3.003E-06	2.302E-03
negative regulation of protein ubiquitination	GO:0031397		4.314E-06	2.481E-03
positive regulation of Rho GTPase activity	GO:0032321		4.314E-06	1.985E-03
cGMP-mediated signaling	GO:0019934		6.469E-06	2.48E-03
negative regulation of translational initiation	GO:0045947		6.469E-06	2.126E-03
astrocyte development	GO:0014002		6.469E-06	1.86E-03
response to peptide hormone stimulus	GO:0043434		7.081E-06	1.81E-03
positive regulation of cyclin-dependent protein kinase activity	GO:0045737		9.053E-06	2.082E-03
regulation of focal adhesion formation	GO:0051893		9.053E-06	1.893E-03

Zhou file

Name	Accession Number	Link	P-val	Corrected P-val
regulation of cyclin-dependent protein kinase activity	GO:0000079		4.41E-08	1.047E-04
negative regulation of translation	GO:0017148		3.143E-07	3.73E-04
G1/S transition of mitotic cell cycle	GO:0000082		3.616E-06	2.86E-03
negative regulation of protein ubiquitination	GO:0031397		4.596E-06	2.727E-03
cGMP-mediated signaling	GO:0019934		6.891E-06	3.271E-03
positive regulation of Rho GTPase activity	GO:0032321		6.891E-06	2.726E-03
response to peptide hormone stimulus	GO:0043434		9.28E-06	3.146E-03
positive regulation of cyclin-dependent protein kinase activity	GO:0045737		9.644E-06	2.861E-03
negative regulation of translational initiation	GO:0045947		9.644E-06	2.543E-03
astrocyte development	GO:0014002		9.644E-06	2.289E-03
keratinocyte proliferation	GO:0043616		1.285E-05	2.773E-03