Study run-a2
Study informations
103 subnetworks in total page | file
306 genes associated page | file
Enriched GO terms page
General informations
General Index page
Study Index page
Subnetwork 8573-10-real
score
| Dataset | Score | P-val 1 | P-val 2 | P-val 3 |
|---|
| Desmedt | 0.1748 | 7.214e-03 | 5.168e-03 | 6.705e-02 |
|---|
| IPC-NIBC-129 | 0.2893 | 7.422e-02 | 1.048e-01 | 5.610e-01 |
|---|
| Ivshina_GPL96-GPL97 | 0.2657 | 1.019e-02 | 1.692e-02 | 2.752e-01 |
|---|
| Loi_GPL570 | 0.2125 | 9.892e-02 | 1.104e-01 | 3.663e-01 |
|---|
| Loi_GPL96-GPL97 | 0.1630 | 0.000e+00 | 3.000e-06 | 0.000e+00 |
|---|
| Parker_GPL1390 | 0.2390 | 1.443e-01 | 1.699e-01 | 6.596e-01 |
|---|
| Parker_GPL887 | 0.1189 | 4.190e-01 | 4.381e-01 | 4.651e-01 |
|---|
| Pawitan_GPL96-GPL97 | 0.3178 | 4.572e-01 | 3.833e-01 | 9.539e-01 |
|---|
| Schmidt | 0.1677 | 1.720e-02 | 1.969e-02 | 2.109e-01 |
|---|
| Sotiriou | 0.3066 | 1.332e-02 | 1.028e-02 | 2.215e-01 |
|---|
| Van-De-Vijver | 0.2279 | 1.675e-03 | 2.408e-03 | 8.248e-02 |
|---|
| Zhang | 0.2799 | 1.283e-01 | 8.321e-02 | 2.705e-01 |
|---|
| Zhou | 0.3915 | 9.743e-02 | 8.980e-02 | 5.105e-01 |
|---|
Expression data for subnetwork 8573-10-real in each dataset
Desmedt |
IPC-NIBC-129 |
Ivshina_GPL96-GPL97 |
Loi_GPL570 |
Loi_GPL96-GPL97 |
Parker_GPL1390 |
Parker_GPL887 |
Pawitan_GPL96-GPL97 |
Schmidt |
Sotiriou |
Van-De-Vijver |
Zhang |
Zhou |
Subnetwork structure for each dataset
- Desmedt
Score for each gene in subnetwork 8573-10-real in each dataset
| Gene Symbol | Links | Frequency | Frequency Rank | Subnetwork score rank | Global rank |
Desmedt | IPC-NIBC-129 | Ivshina_GPL96-GPL97 | Loi_GPL570 | Loi_GPL96-GPL97 | Parker_GPL1390 | Parker_GPL887 | Pawitan_GPL96-GPL97 | Schmidt | Sotiriou | Van-De-Vijver | Zhang | Zhou |
|---|
| cdkn1a |   | 44 | 7 | 1 | 4 | 0.115 | -0.020 | 0.065 | 0.082 | 0.099 | 0.124 | 0.055 | 0.087 | 0.068 | 0.144 | undef | -0.201 | 0.069 |
|---|
| tle1 | | 47 | 6 | 1 | 3 | 0.062 | 0.235 | -0.032 | -0.177 | 0.033 | 0.085 | 0.339 | 0.068 | 0.126 | -0.027 | 0.170 | 0.068 | 0.025 |
|---|
| cep55 | | 6 | 35 | 207 | 187 | 0.054 | 0.210 | 0.148 | 0.129 | 0.135 | 0.162 | 0.133 | 0.209 | 0.202 | 0.138 | 0.189 | 0.115 | 0.330 |
|---|
| ccnb1 | | 42 | 8 | 56 | 39 | 0.082 | 0.246 | 0.212 | 0.224 | 0.256 | 0.099 | 0.126 | 0.351 | 0.129 | 0.249 | undef | 0.167 | 0.398 |
|---|
| hif1a | | 1 | 116 | 268 | 268 | 0.097 | 0.246 | 0.089 | -0.009 | 0.101 | 0.088 | -0.152 | 0.011 | -0.043 | 0.119 | 0.043 | 0.129 | -0.135 |
|---|
| six1 | | 13 | 17 | 123 | 96 | 0.097 | 0.114 | 0.095 | 0.149 | 0.151 | -0.015 | -0.006 | 0.123 | 0.113 | 0.184 | 0.082 | 0.191 | 0.079 |
|---|
| ccnd1 | | 92 | 2 | 18 | 12 | 0.127 | -0.183 | 0.062 | 0.190 | 0.157 | -0.002 | -0.190 | 0.105 | -0.107 | 0.174 | undef | 0.144 | 0.290 |
|---|
| cask | | 1 | 116 | 268 | 268 | 0.054 | 0.082 | 0.078 | -0.028 | 0.135 | 0.197 | -0.015 | -0.081 | -0.104 | 0.081 | 0.058 | 0.049 | 0.336 |
|---|
| cdc2 | | 96 | 1 | 1 | 1 | 0.073 | 0.247 | 0.206 | 0.172 | 0.247 | 0.153 | -0.131 | 0.282 | 0.226 | 0.221 | 0.162 | 0.297 | 0.336 |
|---|
| hif3a | | 1 | 116 | 268 | 268 | 0.107 | 0.111 | 0.092 | 0.083 | 0.095 | -0.088 | 0.481 | 0.226 | -0.064 | 0.106 | 0.055 | 0.227 | -0.155 |
|---|
| cdc25a | | 8 | 26 | 95 | 79 | -0.019 | 0.221 | 0.093 | 0.158 | 0.120 | -0.061 | 0.406 | 0.207 | 0.211 | 0.016 | -0.019 | 0.183 | 0.264 |
|---|
| mdfi | | 7 | 30 | 42 | 35 | -0.050 | 0.215 | 0.036 | -0.005 | 0.054 | 0.263 | 0.176 | 0.130 | 0.296 | -0.041 | 0.074 | 0.076 | 0.056 |
|---|
| ard1a | | 2 | 78 | 117 | 115 | 0.019 | 0.141 | 0.130 | 0.229 | 0.128 | 0.205 | 0.064 | 0.218 | 0.139 | 0.061 | 0.112 | 0.014 | 0.124 |
|---|
| cntnap2 | | 1 | 116 | 268 | 268 | 0.051 | 0.078 | 0.258 | 0.086 | 0.160 | 0.039 | -0.043 | 0.018 | -0.113 | 0.174 | 0.071 | 0.140 | 0.129 |
|---|
GO Enrichment output for subnetwork 8573-10-real in each dataset
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 |  | 1.249E-06 | 2.873E-03 |
|---|
| G2/M transition of mitotic cell cycle | GO:0000086 | | 4.8E-06 | 5.52E-03 |
|---|
| negative regulation of Wnt receptor signaling pathway | GO:0030178 | | 4.8E-06 | 3.68E-03 |
|---|
| interphase of mitotic cell cycle | GO:0051329 | | 1.021E-05 | 5.872E-03 |
|---|
| interphase | GO:0051325 | | 1.119E-05 | 5.147E-03 |
|---|
| regulation of Wnt receptor signaling pathway | GO:0030111 | | 2.13E-05 | 8.164E-03 |
|---|
| regulation of hormone biosynthetic process | GO:0046885 | | 2.466E-05 | 8.104E-03 |
|---|
| embryonic hemopoiesis | GO:0035162 | | 2.466E-05 | 7.091E-03 |
|---|
| positive regulation of glycolysis | GO:0045821 | | 2.466E-05 | 6.303E-03 |
|---|
| positive regulation of chemokine production | GO:0032722 | | 2.466E-05 | 5.673E-03 |
|---|
| N-terminal protein amino acid acetylation | GO:0006474 | | 3.696E-05 | 7.728E-03 |
|---|
IPC-NIBC-129 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 5.201E-07 | 1.271E-03 |
|---|
| negative regulation of Wnt receptor signaling pathway | GO:0030178 | | 2.302E-06 | 2.812E-03 |
|---|
| G2/M transition of mitotic cell cycle | GO:0000086 | | 2.985E-06 | 2.431E-03 |
|---|
| interphase of mitotic cell cycle | GO:0051329 | | 4.601E-06 | 2.81E-03 |
|---|
| regulation of Wnt receptor signaling pathway | GO:0030111 | | 1.084E-05 | 5.295E-03 |
|---|
| hemoglobin biosynthetic process | GO:0042541 | | 1.232E-05 | 5.017E-03 |
|---|
| positive regulation of glycolysis | GO:0045821 | | 1.232E-05 | 4.3E-03 |
|---|
| muscle cell migration | GO:0014812 | | 1.232E-05 | 3.763E-03 |
|---|
| mRNA transcription | GO:0009299 | | 1.232E-05 | 3.345E-03 |
|---|
| positive regulation of chemokine production | GO:0032722 | | 1.232E-05 | 3.01E-03 |
|---|
| regulation of hormone biosynthetic process | GO:0046885 | | 1.847E-05 | 4.102E-03 |
|---|
Ivshina_GPL96-GPL97 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 6.49E-07 | 1.561E-03 |
|---|
| negative regulation of Wnt receptor signaling pathway | GO:0030178 | | 2.055E-06 | 2.473E-03 |
|---|
| G2/M transition of mitotic cell cycle | GO:0000086 | | 3.543E-06 | 2.841E-03 |
|---|
| interphase of mitotic cell cycle | GO:0051329 | | 5.064E-06 | 3.046E-03 |
|---|
| interphase | GO:0051325 | | 5.732E-06 | 2.758E-03 |
|---|
| regulation of Wnt receptor signaling pathway | GO:0030111 | | 1.09E-05 | 4.37E-03 |
|---|
| hemoglobin biosynthetic process | GO:0042541 | | 1.386E-05 | 4.764E-03 |
|---|
| positive regulation of glycolysis | GO:0045821 | | 1.386E-05 | 4.169E-03 |
|---|
| muscle cell migration | GO:0014812 | | 1.386E-05 | 3.705E-03 |
|---|
| mRNA transcription | GO:0009299 | | 1.386E-05 | 3.335E-03 |
|---|
| positive regulation of chemokine production | GO:0032722 | | 1.386E-05 | 3.032E-03 |
|---|
Loi_GPL570 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 5.201E-07 | 1.271E-03 |
|---|
| negative regulation of Wnt receptor signaling pathway | GO:0030178 | | 2.302E-06 | 2.812E-03 |
|---|
| G2/M transition of mitotic cell cycle | GO:0000086 | | 2.985E-06 | 2.431E-03 |
|---|
| interphase of mitotic cell cycle | GO:0051329 | | 4.601E-06 | 2.81E-03 |
|---|
| regulation of Wnt receptor signaling pathway | GO:0030111 | | 1.084E-05 | 5.295E-03 |
|---|
| hemoglobin biosynthetic process | GO:0042541 | | 1.232E-05 | 5.017E-03 |
|---|
| positive regulation of glycolysis | GO:0045821 | | 1.232E-05 | 4.3E-03 |
|---|
| muscle cell migration | GO:0014812 | | 1.232E-05 | 3.763E-03 |
|---|
| mRNA transcription | GO:0009299 | | 1.232E-05 | 3.345E-03 |
|---|
| positive regulation of chemokine production | GO:0032722 | | 1.232E-05 | 3.01E-03 |
|---|
| regulation of hormone biosynthetic process | GO:0046885 | | 1.847E-05 | 4.102E-03 |
|---|
Loi_GPL96-GPL97 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 6.49E-07 | 1.561E-03 |
|---|
| negative regulation of Wnt receptor signaling pathway | GO:0030178 | | 2.055E-06 | 2.473E-03 |
|---|
| G2/M transition of mitotic cell cycle | GO:0000086 | | 3.543E-06 | 2.841E-03 |
|---|
| interphase of mitotic cell cycle | GO:0051329 | | 5.064E-06 | 3.046E-03 |
|---|
| interphase | GO:0051325 | | 5.732E-06 | 2.758E-03 |
|---|
| regulation of Wnt receptor signaling pathway | GO:0030111 | | 1.09E-05 | 4.37E-03 |
|---|
| hemoglobin biosynthetic process | GO:0042541 | | 1.386E-05 | 4.764E-03 |
|---|
| positive regulation of glycolysis | GO:0045821 | | 1.386E-05 | 4.169E-03 |
|---|
| muscle cell migration | GO:0014812 | | 1.386E-05 | 3.705E-03 |
|---|
| mRNA transcription | GO:0009299 | | 1.386E-05 | 3.335E-03 |
|---|
| positive regulation of chemokine production | GO:0032722 | | 1.386E-05 | 3.032E-03 |
|---|
Parker_GPL1390 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| cyclin-dependent protein kinase holoenzyme complex | GO:0000307 | | 4.766E-08 | 1.702E-04 |
|---|
| cyclin-dependent protein kinase regulator activity | GO:0016538 | | 1.402E-07 | 2.503E-04 |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 1.558E-07 | 1.855E-04 |
|---|
| G2/M transition of mitotic cell cycle | GO:0000086 | | 5.755E-07 | 5.138E-04 |
|---|
| negative regulation of Wnt receptor signaling pathway | GO:0030178 | | 9.631E-07 | 6.879E-04 |
|---|
| interphase of mitotic cell cycle | GO:0051329 | | 1.161E-06 | 6.909E-04 |
|---|
| regulation of Wnt receptor signaling pathway | GO:0030111 | | 4.16E-06 | 2.122E-03 |
|---|
| hemoglobin biosynthetic process | GO:0042541 | | 9.657E-06 | 4.311E-03 |
|---|
| mRNA transcription | GO:0009299 | | 9.657E-06 | 3.832E-03 |
|---|
| oxygen homeostasis | GO:0032364 | | 9.657E-06 | 3.449E-03 |
|---|
| positive regulation of vascular endothelial growth factor receptor signaling pathway | GO:0030949 | | 9.657E-06 | 3.135E-03 |
|---|
Parker_GPL887 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| cyclin-dependent protein kinase holoenzyme complex | GO:0000307 | | 2.325E-08 | 8.482E-05 |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 6.523E-08 | 1.19E-04 |
|---|
| cyclin-dependent protein kinase regulator activity | GO:0016538 | | 1.507E-07 | 1.833E-04 |
|---|
| G2/M transition of mitotic cell cycle | GO:0000086 | | 2.316E-07 | 2.112E-04 |
|---|
| interphase of mitotic cell cycle | GO:0051329 | | 4.282E-07 | 3.124E-04 |
|---|
| interphase | GO:0051325 | | 4.725E-07 | 2.873E-04 |
|---|
| negative regulation of Wnt receptor signaling pathway | GO:0030178 | | 5.488E-07 | 2.86E-04 |
|---|
| regulation of Wnt receptor signaling pathway | GO:0030111 | | 2.238E-06 | 1.021E-03 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 5.039E-06 | 2.042E-03 |
|---|
| response to UV | GO:0009411 | | 5.788E-06 | 2.111E-03 |
|---|
| RNA polymerase II carboxy-terminal domain kinase activity | GO:0008353 | | 5.984E-06 | 1.985E-03 |
|---|
Pawitan_GPL96-GPL97 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 6.49E-07 | 1.561E-03 |
|---|
| negative regulation of Wnt receptor signaling pathway | GO:0030178 | | 2.055E-06 | 2.473E-03 |
|---|
| G2/M transition of mitotic cell cycle | GO:0000086 | | 3.543E-06 | 2.841E-03 |
|---|
| interphase of mitotic cell cycle | GO:0051329 | | 5.064E-06 | 3.046E-03 |
|---|
| interphase | GO:0051325 | | 5.732E-06 | 2.758E-03 |
|---|
| regulation of Wnt receptor signaling pathway | GO:0030111 | | 1.09E-05 | 4.37E-03 |
|---|
| hemoglobin biosynthetic process | GO:0042541 | | 1.386E-05 | 4.764E-03 |
|---|
| positive regulation of glycolysis | GO:0045821 | | 1.386E-05 | 4.169E-03 |
|---|
| muscle cell migration | GO:0014812 | | 1.386E-05 | 3.705E-03 |
|---|
| mRNA transcription | GO:0009299 | | 1.386E-05 | 3.335E-03 |
|---|
| positive regulation of chemokine production | GO:0032722 | | 1.386E-05 | 3.032E-03 |
|---|
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 1.249E-06 | 2.873E-03 |
|---|
| G2/M transition of mitotic cell cycle | GO:0000086 | | 4.8E-06 | 5.52E-03 |
|---|
| negative regulation of Wnt receptor signaling pathway | GO:0030178 | | 4.8E-06 | 3.68E-03 |
|---|
| interphase of mitotic cell cycle | GO:0051329 | | 1.021E-05 | 5.872E-03 |
|---|
| interphase | GO:0051325 | | 1.119E-05 | 5.147E-03 |
|---|
| regulation of Wnt receptor signaling pathway | GO:0030111 | | 2.13E-05 | 8.164E-03 |
|---|
| regulation of hormone biosynthetic process | GO:0046885 | | 2.466E-05 | 8.104E-03 |
|---|
| embryonic hemopoiesis | GO:0035162 | | 2.466E-05 | 7.091E-03 |
|---|
| positive regulation of glycolysis | GO:0045821 | | 2.466E-05 | 6.303E-03 |
|---|
| positive regulation of chemokine production | GO:0032722 | | 2.466E-05 | 5.673E-03 |
|---|
| N-terminal protein amino acid acetylation | GO:0006474 | | 3.696E-05 | 7.728E-03 |
|---|
Sotiriou file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 1.249E-06 | 2.873E-03 |
|---|
| G2/M transition of mitotic cell cycle | GO:0000086 | | 4.8E-06 | 5.52E-03 |
|---|
| negative regulation of Wnt receptor signaling pathway | GO:0030178 | | 4.8E-06 | 3.68E-03 |
|---|
| interphase of mitotic cell cycle | GO:0051329 | | 1.021E-05 | 5.872E-03 |
|---|
| interphase | GO:0051325 | | 1.119E-05 | 5.147E-03 |
|---|
| regulation of Wnt receptor signaling pathway | GO:0030111 | | 2.13E-05 | 8.164E-03 |
|---|
| regulation of hormone biosynthetic process | GO:0046885 | | 2.466E-05 | 8.104E-03 |
|---|
| embryonic hemopoiesis | GO:0035162 | | 2.466E-05 | 7.091E-03 |
|---|
| positive regulation of glycolysis | GO:0045821 | | 2.466E-05 | 6.303E-03 |
|---|
| positive regulation of chemokine production | GO:0032722 | | 2.466E-05 | 5.673E-03 |
|---|
| N-terminal protein amino acid acetylation | GO:0006474 | | 3.696E-05 | 7.728E-03 |
|---|
Van-De-Vijver file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| negative regulation of Wnt receptor signaling pathway | GO:0030178 | | 2.936E-07 | 5.411E-04 |
|---|
| regulation of Wnt receptor signaling pathway | GO:0030111 | | 1.573E-06 | 1.45E-03 |
|---|
| hemoglobin biosynthetic process | GO:0042541 | | 1.181E-05 | 7.256E-03 |
|---|
| positive regulation of glucose metabolic process | GO:0010907 | | 1.181E-05 | 5.442E-03 |
|---|
| heart looping | GO:0001947 | | 1.181E-05 | 4.354E-03 |
|---|
| muscle cell migration | GO:0014812 | | 1.181E-05 | 3.628E-03 |
|---|
| regulation of vascular endothelial growth factor production | GO:0010574 | | 1.181E-05 | 3.11E-03 |
|---|
| positive regulation of monooxygenase activity | GO:0032770 | | 1.181E-05 | 2.721E-03 |
|---|
| regulation of hormone metabolic process | GO:0032350 | | 1.181E-05 | 2.419E-03 |
|---|
| positive regulation of erythrocyte differentiation | GO:0045648 | | 1.181E-05 | 2.177E-03 |
|---|
| N-terminal protein amino acid modification | GO:0031365 | | 1.771E-05 | 2.967E-03 |
|---|
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 1.249E-06 | 2.873E-03 |
|---|
| G2/M transition of mitotic cell cycle | GO:0000086 | | 4.8E-06 | 5.52E-03 |
|---|
| negative regulation of Wnt receptor signaling pathway | GO:0030178 | | 4.8E-06 | 3.68E-03 |
|---|
| interphase of mitotic cell cycle | GO:0051329 | | 1.021E-05 | 5.872E-03 |
|---|
| interphase | GO:0051325 | | 1.119E-05 | 5.147E-03 |
|---|
| regulation of Wnt receptor signaling pathway | GO:0030111 | | 2.13E-05 | 8.164E-03 |
|---|
| regulation of hormone biosynthetic process | GO:0046885 | | 2.466E-05 | 8.104E-03 |
|---|
| embryonic hemopoiesis | GO:0035162 | | 2.466E-05 | 7.091E-03 |
|---|
| positive regulation of glycolysis | GO:0045821 | | 2.466E-05 | 6.303E-03 |
|---|
| positive regulation of chemokine production | GO:0032722 | | 2.466E-05 | 5.673E-03 |
|---|
| N-terminal protein amino acid acetylation | GO:0006474 | | 3.696E-05 | 7.728E-03 |
|---|
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 7.536E-07 | 1.788E-03 |
|---|
| G2/M transition of mitotic cell cycle | GO:0000086 | | 2.92E-06 | 3.464E-03 |
|---|
| negative regulation of Wnt receptor signaling pathway | GO:0030178 | | 2.92E-06 | 2.31E-03 |
|---|
| interphase of mitotic cell cycle | GO:0051329 | | 5.551E-06 | 3.293E-03 |
|---|
| interphase | GO:0051325 | | 6.078E-06 | 2.885E-03 |
|---|
| regulation of Wnt receptor signaling pathway | GO:0030111 | | 1.298E-05 | 5.135E-03 |
|---|
| hemoglobin biosynthetic process | GO:0042541 | | 1.77E-05 | 6.002E-03 |
|---|
| embryonic hemopoiesis | GO:0035162 | | 1.77E-05 | 5.252E-03 |
|---|
| positive regulation of chemokine production | GO:0032722 | | 1.77E-05 | 4.668E-03 |
|---|
| oxygen homeostasis | GO:0032364 | | 1.77E-05 | 4.201E-03 |
|---|
| positive regulation of vascular endothelial growth factor receptor signaling pathway | GO:0030949 | | 2.653E-05 | 5.724E-03 |
|---|
