Study run-a2
Study informations
103 subnetworks in total page | file
306 genes associated page | file
Enriched GO terms page
General informations
General Index page
Study Index page
Subnetwork 7465-9-real
score
| Dataset | Score | P-val 1 | P-val 2 | P-val 3 |
|---|
| Desmedt | 0.2067 | 2.005e-02 | 1.646e-02 | 1.496e-01 |
|---|
| IPC-NIBC-129 | 0.2139 | 4.736e-02 | 6.832e-02 | 4.300e-01 |
|---|
| Ivshina_GPL96-GPL97 | 0.2159 | 2.688e-02 | 4.098e-02 | 4.503e-01 |
|---|
| Loi_GPL570 | 0.2531 | 5.603e-02 | 6.356e-02 | 2.390e-01 |
|---|
| Loi_GPL96-GPL97 | 0.1571 | 3.800e-05 | 2.660e-04 | 4.810e-04 |
|---|
| Parker_GPL1390 | 0.1939 | 8.151e-02 | 9.889e-02 | 5.082e-01 |
|---|
| Parker_GPL887 | 0.1047 | 3.451e-01 | 3.638e-01 | 3.741e-01 |
|---|
| Pawitan_GPL96-GPL97 | 0.3567 | 5.197e-01 | 4.475e-01 | 9.713e-01 |
|---|
| Schmidt | 0.2086 | 1.361e-02 | 1.533e-02 | 1.790e-01 |
|---|
| Sotiriou | 0.3046 | 1.375e-02 | 1.062e-02 | 2.255e-01 |
|---|
| Van-De-Vijver | 0.2609 | 2.500e-04 | 3.590e-04 | 2.249e-02 |
|---|
| Zhang | 0.2940 | 1.403e-01 | 9.310e-02 | 2.912e-01 |
|---|
| Zhou | 0.4975 | 6.850e-02 | 5.705e-02 | 4.003e-01 |
|---|
Expression data for subnetwork 7465-9-real in each dataset
Desmedt |
IPC-NIBC-129 |
Ivshina_GPL96-GPL97 |
Loi_GPL570 |
Loi_GPL96-GPL97 |
Parker_GPL1390 |
Parker_GPL887 |
Pawitan_GPL96-GPL97 |
Schmidt |
Sotiriou |
Van-De-Vijver |
Zhang |
Zhou |
Subnetwork structure for each dataset
- Desmedt
Score for each gene in subnetwork 7465-9-real in each dataset
| Gene Symbol | Links | Frequency | Frequency Rank | Subnetwork score rank | Global rank |
Desmedt | IPC-NIBC-129 | Ivshina_GPL96-GPL97 | Loi_GPL570 | Loi_GPL96-GPL97 | Parker_GPL1390 | Parker_GPL887 | Pawitan_GPL96-GPL97 | Schmidt | Sotiriou | Van-De-Vijver | Zhang | Zhou |
|---|
| cdkn3 |   | 53 | 5 | 29 | 22 | 0.114 | 0.269 | 0.199 | 0.136 | 0.193 | 0.166 | -0.009 | 0.323 | 0.186 | 0.198 | 0.201 | 0.271 | 0.372 |
|---|
| wee1 | | 1 | 116 | 194 | 202 | 0.169 | -0.036 | -0.023 | 0.062 | 0.083 | 0.129 | -0.162 | 0.112 | 0.043 | 0.033 | undef | 0.008 | 0.328 |
|---|
| ccnd1 | | 92 | 2 | 18 | 12 | 0.127 | -0.183 | 0.062 | 0.190 | 0.157 | -0.002 | -0.190 | 0.105 | -0.107 | 0.174 | undef | 0.144 | 0.290 |
|---|
| tsc1 | | 58 | 4 | 18 | 13 | 0.049 | 0.012 | -0.055 | 0.072 | 0.055 | -0.144 | -0.242 | -0.196 | 0.006 | 0.010 | 0.095 | -0.007 | 0.207 |
|---|
| cdc2 | | 96 | 1 | 1 | 1 | 0.073 | 0.247 | 0.206 | 0.172 | 0.247 | 0.153 | -0.131 | 0.282 | 0.226 | 0.221 | 0.162 | 0.297 | 0.336 |
|---|
| map4 | | 6 | 35 | 18 | 20 | 0.002 | 0.046 | 0.067 | -0.043 | 0.034 | 0.119 | 0.159 | -0.058 | -0.020 | 0.043 | 0.054 | -0.074 | 0.302 |
|---|
| sfn | | 61 | 3 | 1 | 2 | 0.077 | 0.137 | 0.111 | 0.172 | 0.112 | 0.119 | 0.141 | 0.219 | 0.100 | 0.147 | 0.158 | 0.079 | 0.181 |
|---|
| cdca3 | | 1 | 116 | 194 | 202 | 0.061 | 0.245 | 0.116 | 0.187 | 0.152 | -0.141 | 0.224 | 0.247 | 0.234 | 0.117 | undef | 0.102 | 0.401 |
|---|
GO Enrichment output for subnetwork 7465-9-real in each dataset
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 |  | 1.139E-07 | 2.62E-04 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 7.591E-06 | 8.73E-03 |
|---|
| negative regulation of protein ubiquitination | GO:0031397 | | 7.841E-06 | 6.011E-03 |
|---|
| positive regulation of Rho GTPase activity | GO:0032321 | | 7.841E-06 | 4.508E-03 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 1.645E-05 | 7.566E-03 |
|---|
| regulation of focal adhesion formation | GO:0051893 | | 1.645E-05 | 6.305E-03 |
|---|
| keratinocyte proliferation | GO:0043616 | | 2.192E-05 | 7.202E-03 |
|---|
| positive regulation of Ras GTPase activity | GO:0032320 | | 2.192E-05 | 6.302E-03 |
|---|
| positive regulation of GTPase activity | GO:0043547 | | 2.817E-05 | 7.198E-03 |
|---|
| regulation of phosphoprotein phosphatase activity | GO:0043666 | | 2.817E-05 | 6.478E-03 |
|---|
| regulation of stress fiber formation | GO:0051492 | | 2.817E-05 | 5.889E-03 |
|---|
IPC-NIBC-129 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 4.253E-08 | 1.039E-04 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 3.07E-06 | 3.75E-03 |
|---|
| negative regulation of protein ubiquitination | GO:0031397 | | 3.653E-06 | 2.975E-03 |
|---|
| activation of Ras GTPase activity | GO:0032856 | | 5.477E-06 | 3.345E-03 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 1.022E-05 | 4.992E-03 |
|---|
| regulation of focal adhesion formation | GO:0051893 | | 1.022E-05 | 4.16E-03 |
|---|
| regulation of phosphoprotein phosphatase activity | GO:0043666 | | 1.313E-05 | 4.583E-03 |
|---|
| regulation of phosphatase activity | GO:0010921 | | 1.641E-05 | 5.01E-03 |
|---|
| regulation of stress fiber formation | GO:0051492 | | 1.641E-05 | 4.454E-03 |
|---|
| keratinocyte proliferation | GO:0043616 | | 2.005E-05 | 4.897E-03 |
|---|
| positive regulation of Rho GTPase activity | GO:0032321 | | 2.005E-05 | 4.452E-03 |
|---|
Ivshina_GPL96-GPL97 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 6.735E-08 | 1.62E-04 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 4.35E-06 | 5.233E-03 |
|---|
| negative regulation of protein ubiquitination | GO:0031397 | | 4.625E-06 | 3.709E-03 |
|---|
| activation of Ras GTPase activity | GO:0032856 | | 4.625E-06 | 2.782E-03 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 1.293E-05 | 6.223E-03 |
|---|
| regulation of focal adhesion formation | GO:0051893 | | 1.293E-05 | 5.186E-03 |
|---|
| keratinocyte proliferation | GO:0043616 | | 1.662E-05 | 5.713E-03 |
|---|
| regulation of phosphoprotein phosphatase activity | GO:0043666 | | 1.662E-05 | 4.999E-03 |
|---|
| regulation of phosphatase activity | GO:0010921 | | 2.077E-05 | 5.552E-03 |
|---|
| regulation of stress fiber formation | GO:0051492 | | 2.077E-05 | 4.997E-03 |
|---|
| positive regulation of Rho GTPase activity | GO:0032321 | | 2.077E-05 | 4.542E-03 |
|---|
Loi_GPL570 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 4.253E-08 | 1.039E-04 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 3.07E-06 | 3.75E-03 |
|---|
| negative regulation of protein ubiquitination | GO:0031397 | | 3.653E-06 | 2.975E-03 |
|---|
| activation of Ras GTPase activity | GO:0032856 | | 5.477E-06 | 3.345E-03 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 1.022E-05 | 4.992E-03 |
|---|
| regulation of focal adhesion formation | GO:0051893 | | 1.022E-05 | 4.16E-03 |
|---|
| regulation of phosphoprotein phosphatase activity | GO:0043666 | | 1.313E-05 | 4.583E-03 |
|---|
| regulation of phosphatase activity | GO:0010921 | | 1.641E-05 | 5.01E-03 |
|---|
| regulation of stress fiber formation | GO:0051492 | | 1.641E-05 | 4.454E-03 |
|---|
| keratinocyte proliferation | GO:0043616 | | 2.005E-05 | 4.897E-03 |
|---|
| positive regulation of Rho GTPase activity | GO:0032321 | | 2.005E-05 | 4.452E-03 |
|---|
Loi_GPL96-GPL97 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 6.735E-08 | 1.62E-04 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 4.35E-06 | 5.233E-03 |
|---|
| negative regulation of protein ubiquitination | GO:0031397 | | 4.625E-06 | 3.709E-03 |
|---|
| activation of Ras GTPase activity | GO:0032856 | | 4.625E-06 | 2.782E-03 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 1.293E-05 | 6.223E-03 |
|---|
| regulation of focal adhesion formation | GO:0051893 | | 1.293E-05 | 5.186E-03 |
|---|
| keratinocyte proliferation | GO:0043616 | | 1.662E-05 | 5.713E-03 |
|---|
| regulation of phosphoprotein phosphatase activity | GO:0043666 | | 1.662E-05 | 4.999E-03 |
|---|
| regulation of phosphatase activity | GO:0010921 | | 2.077E-05 | 5.552E-03 |
|---|
| regulation of stress fiber formation | GO:0051492 | | 2.077E-05 | 4.997E-03 |
|---|
| positive regulation of Rho GTPase activity | GO:0032321 | | 2.077E-05 | 4.542E-03 |
|---|
Parker_GPL1390 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 4.076E-09 | 1.455E-05 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 9.881E-07 | 1.764E-03 |
|---|
| negative regulation of protein ubiquitination | GO:0031397 | | 1.933E-06 | 2.302E-03 |
|---|
| protein kinase regulator activity | GO:0019887 | | 2.702E-06 | 2.412E-03 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 2.9E-06 | 2.071E-03 |
|---|
| regulation of phosphoprotein phosphatase activity | GO:0043666 | | 4.058E-06 | 2.415E-03 |
|---|
| regulation of focal adhesion formation | GO:0051893 | | 4.058E-06 | 2.07E-03 |
|---|
| kinase regulator activity | GO:0019207 | | 4.732E-06 | 2.112E-03 |
|---|
| cyclin-dependent protein kinase holoenzyme complex | GO:0000307 | | 5.41E-06 | 2.147E-03 |
|---|
| keratinocyte proliferation | GO:0043616 | | 5.41E-06 | 1.932E-03 |
|---|
| interphase of mitotic cell cycle | GO:0051329 | | 5.722E-06 | 1.858E-03 |
|---|
Parker_GPL887 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 3.392E-09 | 1.238E-05 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 6.271E-07 | 1.144E-03 |
|---|
| positive regulation of cell-matrix adhesion | GO:0001954 | | 1.597E-06 | 1.942E-03 |
|---|
| RNA polymerase II carboxy-terminal domain kinase activity | GO:0008353 | | 1.597E-06 | 1.457E-03 |
|---|
| protein kinase regulator activity | GO:0019887 | | 2.315E-06 | 1.689E-03 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 2.395E-06 | 1.456E-03 |
|---|
| regulation of focal adhesion formation | GO:0051893 | | 2.395E-06 | 1.248E-03 |
|---|
| negative regulation of protein ubiquitination | GO:0031397 | | 2.395E-06 | 1.092E-03 |
|---|
| kinase regulator activity | GO:0019207 | | 3.549E-06 | 1.438E-03 |
|---|
| interphase of mitotic cell cycle | GO:0051329 | | 4.303E-06 | 1.57E-03 |
|---|
| cyclin-dependent protein kinase holoenzyme complex | GO:0000307 | | 4.469E-06 | 1.482E-03 |
|---|
Pawitan_GPL96-GPL97 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 6.735E-08 | 1.62E-04 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 4.35E-06 | 5.233E-03 |
|---|
| negative regulation of protein ubiquitination | GO:0031397 | | 4.625E-06 | 3.709E-03 |
|---|
| activation of Ras GTPase activity | GO:0032856 | | 4.625E-06 | 2.782E-03 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 1.293E-05 | 6.223E-03 |
|---|
| regulation of focal adhesion formation | GO:0051893 | | 1.293E-05 | 5.186E-03 |
|---|
| keratinocyte proliferation | GO:0043616 | | 1.662E-05 | 5.713E-03 |
|---|
| regulation of phosphoprotein phosphatase activity | GO:0043666 | | 1.662E-05 | 4.999E-03 |
|---|
| regulation of phosphatase activity | GO:0010921 | | 2.077E-05 | 5.552E-03 |
|---|
| regulation of stress fiber formation | GO:0051492 | | 2.077E-05 | 4.997E-03 |
|---|
| positive regulation of Rho GTPase activity | GO:0032321 | | 2.077E-05 | 4.542E-03 |
|---|
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 1.139E-07 | 2.62E-04 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 7.591E-06 | 8.73E-03 |
|---|
| negative regulation of protein ubiquitination | GO:0031397 | | 7.841E-06 | 6.011E-03 |
|---|
| positive regulation of Rho GTPase activity | GO:0032321 | | 7.841E-06 | 4.508E-03 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 1.645E-05 | 7.566E-03 |
|---|
| regulation of focal adhesion formation | GO:0051893 | | 1.645E-05 | 6.305E-03 |
|---|
| keratinocyte proliferation | GO:0043616 | | 2.192E-05 | 7.202E-03 |
|---|
| positive regulation of Ras GTPase activity | GO:0032320 | | 2.192E-05 | 6.302E-03 |
|---|
| positive regulation of GTPase activity | GO:0043547 | | 2.817E-05 | 7.198E-03 |
|---|
| regulation of phosphoprotein phosphatase activity | GO:0043666 | | 2.817E-05 | 6.478E-03 |
|---|
| regulation of stress fiber formation | GO:0051492 | | 2.817E-05 | 5.889E-03 |
|---|
Sotiriou file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 1.139E-07 | 2.62E-04 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 7.591E-06 | 8.73E-03 |
|---|
| negative regulation of protein ubiquitination | GO:0031397 | | 7.841E-06 | 6.011E-03 |
|---|
| positive regulation of Rho GTPase activity | GO:0032321 | | 7.841E-06 | 4.508E-03 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 1.645E-05 | 7.566E-03 |
|---|
| regulation of focal adhesion formation | GO:0051893 | | 1.645E-05 | 6.305E-03 |
|---|
| keratinocyte proliferation | GO:0043616 | | 2.192E-05 | 7.202E-03 |
|---|
| positive regulation of Ras GTPase activity | GO:0032320 | | 2.192E-05 | 6.302E-03 |
|---|
| positive regulation of GTPase activity | GO:0043547 | | 2.817E-05 | 7.198E-03 |
|---|
| regulation of phosphoprotein phosphatase activity | GO:0043666 | | 2.817E-05 | 6.478E-03 |
|---|
| regulation of stress fiber formation | GO:0051492 | | 2.817E-05 | 5.889E-03 |
|---|
Van-De-Vijver file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| negative regulation of cellular protein metabolic process | GO:0032269 | | 2.507E-06 | 4.621E-03 |
|---|
| regulation of cytoskeleton organization | GO:0051493 | | 3.051E-06 | 2.812E-03 |
|---|
| negative regulation of protein metabolic process | GO:0051248 | | 3.351E-06 | 2.058E-03 |
|---|
| positive regulation of cell growth | GO:0030307 | | 3.8E-06 | 1.751E-03 |
|---|
| regulation of focal adhesion formation | GO:0051893 | | 3.8E-06 | 1.401E-03 |
|---|
| regulation of Rho GTPase activity | GO:0032319 | | 3.8E-06 | 1.167E-03 |
|---|
| positive regulation of Ras GTPase activity | GO:0032320 | | 3.8E-06 | 1.001E-03 |
|---|
| positive regulation of GTPase activity | GO:0043547 | | 5.319E-06 | 1.225E-03 |
|---|
| keratinocyte proliferation | GO:0043616 | | 5.319E-06 | 1.089E-03 |
|---|
| negative regulation of microtubule depolymerization | GO:0007026 | | 7.091E-06 | 1.307E-03 |
|---|
| regulation of stress fiber formation | GO:0051492 | | 7.091E-06 | 1.188E-03 |
|---|
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 1.139E-07 | 2.62E-04 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 7.591E-06 | 8.73E-03 |
|---|
| negative regulation of protein ubiquitination | GO:0031397 | | 7.841E-06 | 6.011E-03 |
|---|
| positive regulation of Rho GTPase activity | GO:0032321 | | 7.841E-06 | 4.508E-03 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 1.645E-05 | 7.566E-03 |
|---|
| regulation of focal adhesion formation | GO:0051893 | | 1.645E-05 | 6.305E-03 |
|---|
| keratinocyte proliferation | GO:0043616 | | 2.192E-05 | 7.202E-03 |
|---|
| positive regulation of Ras GTPase activity | GO:0032320 | | 2.192E-05 | 6.302E-03 |
|---|
| positive regulation of GTPase activity | GO:0043547 | | 2.817E-05 | 7.198E-03 |
|---|
| regulation of phosphoprotein phosphatase activity | GO:0043666 | | 2.817E-05 | 6.478E-03 |
|---|
| regulation of stress fiber formation | GO:0051492 | | 2.817E-05 | 5.889E-03 |
|---|
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 1.691E-07 | 4.013E-04 |
|---|
| negative regulation of protein ubiquitination | GO:0031397 | | 8.632E-06 | 0.01024214 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 9.551E-06 | 7.555E-03 |
|---|
| positive regulation of Rho GTPase activity | GO:0032321 | | 1.294E-05 | 7.677E-03 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 1.811E-05 | 8.594E-03 |
|---|
| keratinocyte proliferation | GO:0043616 | | 2.413E-05 | 9.543E-03 |
|---|
| regulation of focal adhesion formation | GO:0051893 | | 2.413E-05 | 8.18E-03 |
|---|
| regulation of phosphoprotein phosphatase activity | GO:0043666 | | 3.873E-05 | 0.01148962 |
|---|
| regulation of stress fiber formation | GO:0051492 | | 3.873E-05 | 0.01021299 |
|---|
| positive regulation of Ras GTPase activity | GO:0032320 | | 3.873E-05 | 9.192E-03 |
|---|
| regulation of phosphatase activity | GO:0010921 | | 4.732E-05 | 0.01020717 |
|---|
