Study run-a2
Study informations
103 subnetworks in total page | file
306 genes associated page | file
Enriched GO terms page
General informations
General Index page
Study Index page
Subnetwork 3925-4-real
score
| Dataset | Score | P-val 1 | P-val 2 | P-val 3 |
|---|
| Desmedt | 0.1923 | 1.601e-02 | 1.277e-02 | 1.261e-01 |
|---|
| IPC-NIBC-129 | 0.3107 | 4.072e-02 | 5.913e-02 | 3.897e-01 |
|---|
| Ivshina_GPL96-GPL97 | 0.2269 | 6.514e-03 | 1.125e-02 | 2.139e-01 |
|---|
| Loi_GPL570 | 0.1950 | 1.256e-01 | 1.392e-01 | 4.327e-01 |
|---|
| Loi_GPL96-GPL97 | 0.1693 | 0.000e+00 | 1.000e-06 | 0.000e+00 |
|---|
| Parker_GPL1390 | 0.2595 | 6.418e-02 | 7.878e-02 | 4.502e-01 |
|---|
| Parker_GPL887 | 0.0570 | 3.769e-01 | 3.958e-01 | 4.134e-01 |
|---|
| Pawitan_GPL96-GPL97 | 0.3881 | 7.635e-01 | 7.151e-01 | 9.978e-01 |
|---|
| Schmidt | 0.2255 | 1.699e-02 | 1.944e-02 | 2.092e-01 |
|---|
| Sotiriou | 0.3104 | 1.249e-02 | 9.618e-03 | 2.137e-01 |
|---|
| Van-De-Vijver | 0.2719 | 1.143e-03 | 1.644e-03 | 6.416e-02 |
|---|
| Zhang | 0.2806 | 1.167e-01 | 7.381e-02 | 2.499e-01 |
|---|
| Zhou | 0.4129 | 5.136e-02 | 3.915e-02 | 3.216e-01 |
|---|
Expression data for subnetwork 3925-4-real in each dataset
Desmedt |
IPC-NIBC-129 |
Ivshina_GPL96-GPL97 |
Loi_GPL570 |
Loi_GPL96-GPL97 |
Parker_GPL1390 |
Parker_GPL887 |
Pawitan_GPL96-GPL97 |
Schmidt |
Sotiriou |
Van-De-Vijver |
Zhang |
Zhou |
Subnetwork structure for each dataset
- Desmedt
Score for each gene in subnetwork 3925-4-real in each dataset
| Gene Symbol | Links | Frequency | Frequency Rank | Subnetwork score rank | Global rank |
Desmedt | IPC-NIBC-129 | Ivshina_GPL96-GPL97 | Loi_GPL570 | Loi_GPL96-GPL97 | Parker_GPL1390 | Parker_GPL887 | Pawitan_GPL96-GPL97 | Schmidt | Sotiriou | Van-De-Vijver | Zhang | Zhou |
|---|
| cdkn3 |   | 53 | 5 | 29 | 22 | 0.114 | 0.269 | 0.199 | 0.136 | 0.193 | 0.166 | -0.009 | 0.323 | 0.186 | 0.198 | 0.201 | 0.271 | 0.372 |
|---|
| stmn2 | | 29 | 9 | 34 | 27 | 0.057 | 0.106 | 0.005 | 0.052 | 0.110 | 0.071 | -0.099 | 0.006 | 0.034 | 0.103 | 0.008 | 0.113 | -0.039 |
|---|
| cdkn1a | | 44 | 7 | 1 | 4 | 0.115 | -0.020 | 0.065 | 0.082 | 0.099 | 0.124 | 0.055 | 0.087 | 0.068 | 0.144 | undef | -0.201 | 0.069 |
|---|
| tle1 | | 47 | 6 | 1 | 3 | 0.062 | 0.235 | -0.032 | -0.177 | 0.033 | 0.085 | 0.339 | 0.068 | 0.126 | -0.027 | 0.170 | 0.068 | 0.025 |
|---|
| ccnb1 | | 42 | 8 | 56 | 39 | 0.082 | 0.246 | 0.212 | 0.224 | 0.256 | 0.099 | 0.126 | 0.351 | 0.129 | 0.249 | undef | 0.167 | 0.398 |
|---|
| ccnd1 | | 92 | 2 | 18 | 12 | 0.127 | -0.183 | 0.062 | 0.190 | 0.157 | -0.002 | -0.190 | 0.105 | -0.107 | 0.174 | undef | 0.144 | 0.290 |
|---|
| stmn1 | | 4 | 50 | 173 | 157 | 0.047 | 0.304 | 0.149 | 0.091 | 0.131 | 0.200 | 0.070 | 0.275 | 0.232 | 0.130 | 0.194 | 0.130 | 0.348 |
|---|
| tsc1 | | 58 | 4 | 18 | 13 | 0.049 | 0.012 | -0.055 | 0.072 | 0.055 | -0.144 | -0.242 | -0.196 | 0.006 | 0.010 | 0.095 | -0.007 | 0.207 |
|---|
| cdc2 | | 96 | 1 | 1 | 1 | 0.073 | 0.247 | 0.206 | 0.172 | 0.247 | 0.153 | -0.131 | 0.282 | 0.226 | 0.221 | 0.162 | 0.297 | 0.336 |
|---|
| orc6l | | 15 | 11 | 34 | 28 | 0.094 | 0.270 | 0.084 | 0.114 | 0.106 | 0.240 | 0.256 | 0.234 | 0.192 | 0.105 | 0.258 | 0.175 | 0.160 |
|---|
GO Enrichment output for subnetwork 3925-4-real in each dataset
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| interphase of mitotic cell cycle | GO:0051329 |  | 1.072E-08 | 2.466E-05 |
|---|
| interphase | GO:0051325 | | 1.205E-08 | 1.385E-05 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 5.651E-08 | 4.332E-05 |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 1.139E-07 | 6.551E-05 |
|---|
| G2/M transition of mitotic cell cycle | GO:0000086 | | 8.282E-07 | 3.81E-04 |
|---|
| negative regulation of protein ubiquitination | GO:0031397 | | 7.841E-06 | 3.006E-03 |
|---|
| positive regulation of Rho GTPase activity | GO:0032321 | | 7.841E-06 | 2.576E-03 |
|---|
| response to UV | GO:0009411 | | 9.322E-06 | 2.68E-03 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 1.645E-05 | 4.203E-03 |
|---|
| regulation of focal adhesion formation | GO:0051893 | | 1.645E-05 | 3.783E-03 |
|---|
| anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process | GO:0031145 | | 2.192E-05 | 4.582E-03 |
|---|
IPC-NIBC-129 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| interphase of mitotic cell cycle | GO:0051329 | | 2.156E-09 | 5.267E-06 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 1.171E-08 | 1.431E-05 |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 2.824E-08 | 2.299E-05 |
|---|
| G2/M transition of mitotic cell cycle | GO:0000086 | | 3.476E-07 | 2.123E-04 |
|---|
| negative regulation of protein ubiquitination | GO:0031397 | | 3.005E-06 | 1.468E-03 |
|---|
| response to UV | GO:0009411 | | 3.923E-06 | 1.597E-03 |
|---|
| activation of Ras GTPase activity | GO:0032856 | | 4.506E-06 | 1.573E-03 |
|---|
| anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process | GO:0031145 | | 7.458E-06 | 2.278E-03 |
|---|
| positive regulation of ubiquitin-protein ligase activity during mitotic cell cycle | GO:0051437 | | 7.795E-06 | 2.116E-03 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 8.405E-06 | 2.053E-03 |
|---|
| regulation of focal adhesion formation | GO:0051893 | | 8.405E-06 | 1.867E-03 |
|---|
Ivshina_GPL96-GPL97 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| interphase of mitotic cell cycle | GO:0051329 | | 3.152E-09 | 7.584E-06 |
|---|
| interphase | GO:0051325 | | 3.69E-09 | 4.439E-06 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 1.815E-08 | 1.456E-05 |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 4.374E-08 | 2.631E-05 |
|---|
| G2/M transition of mitotic cell cycle | GO:0000086 | | 4.853E-07 | 2.335E-04 |
|---|
| negative regulation of protein ubiquitination | GO:0031397 | | 3.766E-06 | 1.51E-03 |
|---|
| activation of Ras GTPase activity | GO:0032856 | | 3.766E-06 | 1.295E-03 |
|---|
| response to UV | GO:0009411 | | 4.888E-06 | 1.47E-03 |
|---|
| anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process | GO:0031145 | | 1.039E-05 | 2.779E-03 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 1.053E-05 | 2.534E-03 |
|---|
| regulation of focal adhesion formation | GO:0051893 | | 1.053E-05 | 2.304E-03 |
|---|
Loi_GPL570 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| interphase of mitotic cell cycle | GO:0051329 | | 2.156E-09 | 5.267E-06 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 1.171E-08 | 1.431E-05 |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 2.824E-08 | 2.299E-05 |
|---|
| G2/M transition of mitotic cell cycle | GO:0000086 | | 3.476E-07 | 2.123E-04 |
|---|
| negative regulation of protein ubiquitination | GO:0031397 | | 3.005E-06 | 1.468E-03 |
|---|
| response to UV | GO:0009411 | | 3.923E-06 | 1.597E-03 |
|---|
| activation of Ras GTPase activity | GO:0032856 | | 4.506E-06 | 1.573E-03 |
|---|
| anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process | GO:0031145 | | 7.458E-06 | 2.278E-03 |
|---|
| positive regulation of ubiquitin-protein ligase activity during mitotic cell cycle | GO:0051437 | | 7.795E-06 | 2.116E-03 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 8.405E-06 | 2.053E-03 |
|---|
| regulation of focal adhesion formation | GO:0051893 | | 8.405E-06 | 1.867E-03 |
|---|
Loi_GPL96-GPL97 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| interphase of mitotic cell cycle | GO:0051329 | | 3.152E-09 | 7.584E-06 |
|---|
| interphase | GO:0051325 | | 3.69E-09 | 4.439E-06 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 1.815E-08 | 1.456E-05 |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 4.374E-08 | 2.631E-05 |
|---|
| G2/M transition of mitotic cell cycle | GO:0000086 | | 4.853E-07 | 2.335E-04 |
|---|
| negative regulation of protein ubiquitination | GO:0031397 | | 3.766E-06 | 1.51E-03 |
|---|
| activation of Ras GTPase activity | GO:0032856 | | 3.766E-06 | 1.295E-03 |
|---|
| response to UV | GO:0009411 | | 4.888E-06 | 1.47E-03 |
|---|
| anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process | GO:0031145 | | 1.039E-05 | 2.779E-03 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 1.053E-05 | 2.534E-03 |
|---|
| regulation of focal adhesion formation | GO:0051893 | | 1.053E-05 | 2.304E-03 |
|---|
Parker_GPL1390 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| interphase of mitotic cell cycle | GO:0051329 | | 5.842E-10 | 2.086E-06 |
|---|
| cyclin-dependent protein kinase holoenzyme complex | GO:0000307 | | 8.812E-09 | 1.573E-05 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 1.036E-08 | 1.233E-05 |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 1.46E-08 | 1.303E-05 |
|---|
| cyclin-dependent protein kinase regulator activity | GO:0016538 | | 2.594E-08 | 1.853E-05 |
|---|
| G2/M transition of mitotic cell cycle | GO:0000086 | | 1.067E-07 | 6.351E-05 |
|---|
| response to UV | GO:0009411 | | 2.863E-06 | 1.461E-03 |
|---|
| negative regulation of protein ubiquitination | GO:0031397 | | 3.314E-06 | 1.479E-03 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 4.969E-06 | 1.972E-03 |
|---|
| nuclear origin of replication recognition complex | GO:0005664 | | 4.969E-06 | 1.774E-03 |
|---|
| protein kinase regulator activity | GO:0019887 | | 6.445E-06 | 2.092E-03 |
|---|
Parker_GPL887 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| interphase of mitotic cell cycle | GO:0051329 | | 6.058E-10 | 2.21E-06 |
|---|
| interphase | GO:0051325 | | 6.861E-10 | 1.251E-06 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 7.869E-09 | 9.569E-06 |
|---|
| cyclin-dependent protein kinase holoenzyme complex | GO:0000307 | | 8.439E-09 | 7.696E-06 |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 1.59E-08 | 1.16E-05 |
|---|
| cyclin-dependent protein kinase regulator activity | GO:0016538 | | 5.475E-08 | 3.329E-05 |
|---|
| G2/M transition of mitotic cell cycle | GO:0000086 | | 8.417E-08 | 4.387E-05 |
|---|
| response to UV | GO:0009411 | | 2.113E-06 | 9.636E-04 |
|---|
| origin recognition complex | GO:0000808 | | 3.136E-06 | 1.271E-03 |
|---|
| positive regulation of cell-matrix adhesion | GO:0001954 | | 3.136E-06 | 1.144E-03 |
|---|
| RNA polymerase II carboxy-terminal domain kinase activity | GO:0008353 | | 3.136E-06 | 1.04E-03 |
|---|
Pawitan_GPL96-GPL97 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| interphase of mitotic cell cycle | GO:0051329 | | 3.152E-09 | 7.584E-06 |
|---|
| interphase | GO:0051325 | | 3.69E-09 | 4.439E-06 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 1.815E-08 | 1.456E-05 |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 4.374E-08 | 2.631E-05 |
|---|
| G2/M transition of mitotic cell cycle | GO:0000086 | | 4.853E-07 | 2.335E-04 |
|---|
| negative regulation of protein ubiquitination | GO:0031397 | | 3.766E-06 | 1.51E-03 |
|---|
| activation of Ras GTPase activity | GO:0032856 | | 3.766E-06 | 1.295E-03 |
|---|
| response to UV | GO:0009411 | | 4.888E-06 | 1.47E-03 |
|---|
| anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process | GO:0031145 | | 1.039E-05 | 2.779E-03 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 1.053E-05 | 2.534E-03 |
|---|
| regulation of focal adhesion formation | GO:0051893 | | 1.053E-05 | 2.304E-03 |
|---|
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| interphase of mitotic cell cycle | GO:0051329 | | 1.072E-08 | 2.466E-05 |
|---|
| interphase | GO:0051325 | | 1.205E-08 | 1.385E-05 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 5.651E-08 | 4.332E-05 |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 1.139E-07 | 6.551E-05 |
|---|
| G2/M transition of mitotic cell cycle | GO:0000086 | | 8.282E-07 | 3.81E-04 |
|---|
| negative regulation of protein ubiquitination | GO:0031397 | | 7.841E-06 | 3.006E-03 |
|---|
| positive regulation of Rho GTPase activity | GO:0032321 | | 7.841E-06 | 2.576E-03 |
|---|
| response to UV | GO:0009411 | | 9.322E-06 | 2.68E-03 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 1.645E-05 | 4.203E-03 |
|---|
| regulation of focal adhesion formation | GO:0051893 | | 1.645E-05 | 3.783E-03 |
|---|
| anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process | GO:0031145 | | 2.192E-05 | 4.582E-03 |
|---|
Sotiriou file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| interphase of mitotic cell cycle | GO:0051329 | | 1.072E-08 | 2.466E-05 |
|---|
| interphase | GO:0051325 | | 1.205E-08 | 1.385E-05 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 5.651E-08 | 4.332E-05 |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 1.139E-07 | 6.551E-05 |
|---|
| G2/M transition of mitotic cell cycle | GO:0000086 | | 8.282E-07 | 3.81E-04 |
|---|
| negative regulation of protein ubiquitination | GO:0031397 | | 7.841E-06 | 3.006E-03 |
|---|
| positive regulation of Rho GTPase activity | GO:0032321 | | 7.841E-06 | 2.576E-03 |
|---|
| response to UV | GO:0009411 | | 9.322E-06 | 2.68E-03 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 1.645E-05 | 4.203E-03 |
|---|
| regulation of focal adhesion formation | GO:0051893 | | 1.645E-05 | 3.783E-03 |
|---|
| anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process | GO:0031145 | | 2.192E-05 | 4.582E-03 |
|---|
Van-De-Vijver file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of focal adhesion formation | GO:0051893 | | 9.493E-06 | 0.01749647 |
|---|
| regulation of Rho GTPase activity | GO:0032319 | | 9.493E-06 | 8.748E-03 |
|---|
| positive regulation of Ras GTPase activity | GO:0032320 | | 9.493E-06 | 5.832E-03 |
|---|
| positive regulation of GTPase activity | GO:0043547 | | 1.329E-05 | 6.121E-03 |
|---|
| cellular protein complex disassembly | GO:0043624 | | 1.329E-05 | 4.897E-03 |
|---|
| regulation of stress fiber formation | GO:0051492 | | 1.771E-05 | 5.439E-03 |
|---|
| negative regulation of signal transduction | GO:0009968 | | 2.06E-05 | 5.425E-03 |
|---|
| regulation of dephosphorylation | GO:0035303 | | 2.276E-05 | 5.243E-03 |
|---|
| regulation of actin filament bundle formation | GO:0032231 | | 2.276E-05 | 4.66E-03 |
|---|
| negative regulation of cell communication | GO:0010648 | | 2.53E-05 | 4.663E-03 |
|---|
| regulation of protein ubiquitination | GO:0031396 | | 2.844E-05 | 4.764E-03 |
|---|
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| interphase of mitotic cell cycle | GO:0051329 | | 1.072E-08 | 2.466E-05 |
|---|
| interphase | GO:0051325 | | 1.205E-08 | 1.385E-05 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 5.651E-08 | 4.332E-05 |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 1.139E-07 | 6.551E-05 |
|---|
| G2/M transition of mitotic cell cycle | GO:0000086 | | 8.282E-07 | 3.81E-04 |
|---|
| negative regulation of protein ubiquitination | GO:0031397 | | 7.841E-06 | 3.006E-03 |
|---|
| positive regulation of Rho GTPase activity | GO:0032321 | | 7.841E-06 | 2.576E-03 |
|---|
| response to UV | GO:0009411 | | 9.322E-06 | 2.68E-03 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 1.645E-05 | 4.203E-03 |
|---|
| regulation of focal adhesion formation | GO:0051893 | | 1.645E-05 | 3.783E-03 |
|---|
| anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process | GO:0031145 | | 2.192E-05 | 4.582E-03 |
|---|
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| interphase of mitotic cell cycle | GO:0051329 | | 8.466E-09 | 2.009E-05 |
|---|
| interphase | GO:0051325 | | 9.501E-09 | 1.127E-05 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 4.855E-08 | 3.84E-05 |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 1.042E-07 | 6.184E-05 |
|---|
| G2/M transition of mitotic cell cycle | GO:0000086 | | 6.834E-07 | 3.243E-04 |
|---|
| negative regulation of protein ubiquitination | GO:0031397 | | 6.867E-06 | 2.716E-03 |
|---|
| response to UV | GO:0009411 | | 8.218E-06 | 2.786E-03 |
|---|
| positive regulation of Rho GTPase activity | GO:0032321 | | 1.029E-05 | 3.054E-03 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 1.441E-05 | 3.798E-03 |
|---|
| negative regulation of cyclin-dependent protein kinase activity | GO:0045736 | | 1.92E-05 | 4.556E-03 |
|---|
| regulation of focal adhesion formation | GO:0051893 | | 1.92E-05 | 4.142E-03 |
|---|
