Study run-a2
Study informations
103 subnetworks in total page | file
306 genes associated page | file
Enriched GO terms page
General informations
General Index page
Study Index page
Subnetwork 2901-3-real
score
| Dataset | Score | P-val 1 | P-val 2 | P-val 3 |
|---|
| Desmedt | 0.2119 | 1.456e-02 | 1.146e-02 | 1.171e-01 |
|---|
| IPC-NIBC-129 | 0.3003 | 6.170e-02 | 8.793e-02 | 5.055e-01 |
|---|
| Ivshina_GPL96-GPL97 | 0.2316 | 1.258e-03 | 2.493e-03 | 7.613e-02 |
|---|
| Loi_GPL570 | 0.3049 | 2.668e-02 | 3.085e-02 | 1.302e-01 |
|---|
| Loi_GPL96-GPL97 | 0.1589 | 0.000e+00 | 1.000e-06 | 0.000e+00 |
|---|
| Parker_GPL1390 | 0.3344 | 1.404e-02 | 1.846e-02 | 1.839e-01 |
|---|
| Parker_GPL887 | 0.0564 | 3.343e-01 | 3.528e-01 | 3.608e-01 |
|---|
| Pawitan_GPL96-GPL97 | 0.3214 | 7.668e-01 | 7.189e-01 | 9.979e-01 |
|---|
| Schmidt | 0.3304 | 1.945e-02 | 2.245e-02 | 2.295e-01 |
|---|
| Sotiriou | 0.3812 | 3.809e-03 | 2.836e-03 | 1.063e-01 |
|---|
| Van-De-Vijver | 0.2415 | 1.005e-03 | 1.446e-03 | 5.889e-02 |
|---|
| Zhang | 0.2724 | 1.365e-01 | 8.994e-02 | 2.847e-01 |
|---|
| Zhou | 0.4201 | 9.438e-02 | 8.624e-02 | 5.000e-01 |
|---|
Expression data for subnetwork 2901-3-real in each dataset
Desmedt |
IPC-NIBC-129 |
Ivshina_GPL96-GPL97 |
Loi_GPL570 |
Loi_GPL96-GPL97 |
Parker_GPL1390 |
Parker_GPL887 |
Pawitan_GPL96-GPL97 |
Schmidt |
Sotiriou |
Van-De-Vijver |
Zhang |
Zhou |
Subnetwork structure for each dataset
- Desmedt
Score for each gene in subnetwork 2901-3-real in each dataset
| Gene Symbol | Links | Frequency | Frequency Rank | Subnetwork score rank | Global rank |
Desmedt | IPC-NIBC-129 | Ivshina_GPL96-GPL97 | Loi_GPL570 | Loi_GPL96-GPL97 | Parker_GPL1390 | Parker_GPL887 | Pawitan_GPL96-GPL97 | Schmidt | Sotiriou | Van-De-Vijver | Zhang | Zhou |
|---|
| mlf1 |   | 7 | 30 | 56 | 49 | 0.027 | 0.224 | 0.053 | 0.047 | 0.169 | 0.128 | 0.021 | -0.028 | 0.106 | 0.176 | undef | 0.098 | 0.141 |
|---|
| cttn | | 10 | 20 | 1 | 6 | 0.067 | 0.065 | 0.123 | 0.238 | 0.126 | 0.263 | -0.172 | 0.216 | 0.069 | 0.115 | undef | 0.025 | 0.279 |
|---|
| grik5 | | 1 | 116 | 71 | 81 | 0.041 | -0.142 | -0.042 | 0.115 | 0.070 | -0.037 | 0.138 | 0.073 | 0.215 | 0.139 | undef | 0.029 | -0.087 |
|---|
| ywhaz | | 17 | 10 | 29 | 25 | 0.124 | 0.089 | 0.087 | 0.200 | 0.141 | 0.110 | 0.228 | 0.199 | 0.056 | 0.123 | undef | 0.103 | 0.213 |
|---|
| pgk1 | | 5 | 40 | 18 | 23 | 0.141 | 0.293 | 0.135 | 0.197 | 0.170 | 0.170 | 0.120 | 0.310 | 0.201 | 0.127 | -0.046 | 0.054 | 0.141 |
|---|
| cfl1 | | 8 | 26 | 18 | 16 | 0.216 | 0.134 | 0.083 | -0.084 | 0.142 | 0.251 | -0.466 | 0.229 | 0.174 | 0.188 | 0.208 | -0.025 | 0.215 |
|---|
| ccnd1 | | 92 | 2 | 18 | 12 | 0.127 | -0.183 | 0.062 | 0.190 | 0.157 | -0.002 | -0.190 | 0.105 | -0.107 | 0.174 | undef | 0.144 | 0.290 |
|---|
| sp1 | | 8 | 26 | 71 | 57 | 0.054 | 0.186 | 0.147 | 0.242 | 0.125 | 0.033 | -0.370 | 0.202 | 0.284 | 0.227 | 0.304 | 0.091 | -0.068 |
|---|
| tsc1 | | 58 | 4 | 18 | 13 | 0.049 | 0.012 | -0.055 | 0.072 | 0.055 | -0.144 | -0.242 | -0.196 | 0.006 | 0.010 | 0.095 | -0.007 | 0.207 |
|---|
| cdc2 | | 96 | 1 | 1 | 1 | 0.073 | 0.247 | 0.206 | 0.172 | 0.247 | 0.153 | -0.131 | 0.282 | 0.226 | 0.221 | 0.162 | 0.297 | 0.336 |
|---|
| hsph1 | | 8 | 26 | 18 | 16 | 0.071 | 0.260 | 0.138 | 0.050 | 0.148 | 0.197 | -0.116 | 0.161 | 0.143 | 0.132 | -0.006 | 0.094 | 0.357 |
|---|
| c14orf106 | | 1 | 116 | 71 | 81 | 0.025 | 0.115 | 0.093 | -0.065 | 0.008 | 0.025 | 0.095 | 0.006 | 0.214 | 0.015 | -0.101 | 0.119 | 0.085 |
|---|
| acta1 | | 9 | 22 | 1 | 7 | -0.003 | 0.098 | -0.008 | -0.030 | 0.119 | 0.174 | 0.376 | 0.024 | 0.182 | 0.214 | 0.100 | 0.048 | 0.201 |
|---|
| tesk1 | | 7 | 30 | 18 | 19 | 0.110 | 0.169 | 0.161 | 0.179 | 0.096 | 0.138 | -0.154 | 0.245 | 0.155 | 0.092 | 0.067 | 0.029 | 0.200 |
|---|
| spry4 | | 5 | 40 | 18 | 23 | -0.033 | 0.158 | -0.001 | -0.039 | 0.103 | 0.074 | -0.328 | 0.022 | 0.197 | 0.156 | undef | 0.184 | 0.211 |
|---|
GO Enrichment output for subnetwork 2901-3-real in each dataset
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| alcohol catabolic process | GO:0046164 |  | 5.1E-09 | 1.173E-05 |
|---|
| carbohydrate catabolic process | GO:0016052 | | 1.273E-08 | 1.464E-05 |
|---|
| polyol catabolic process | GO:0046174 | | 5.037E-08 | 3.861E-05 |
|---|
| substrate-bound cell migration. cell extension | GO:0006930 | | 5.037E-08 | 2.896E-05 |
|---|
| substrate-bound cell migration | GO:0006929 | | 4.21E-07 | 1.937E-04 |
|---|
| cellular carbohydrate catabolic process | GO:0044275 | | 8.251E-07 | 3.163E-04 |
|---|
| glycolysis | GO:0006096 | | 1.045E-06 | 3.433E-04 |
|---|
| glucose catabolic process | GO:0006007 | | 2.404E-06 | 6.913E-04 |
|---|
| fructose metabolic process | GO:0006000 | | 2.783E-06 | 7.113E-04 |
|---|
| hexose catabolic process | GO:0019320 | | 4.771E-06 | 1.097E-03 |
|---|
| alditol metabolic process | GO:0019400 | | 5.639E-06 | 1.179E-03 |
|---|
IPC-NIBC-129 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| alcohol catabolic process | GO:0046164 | | 7.574E-10 | 1.85E-06 |
|---|
| polyol catabolic process | GO:0046174 | | 1.422E-08 | 1.737E-05 |
|---|
| substrate-bound cell migration. cell extension | GO:0006930 | | 1.422E-08 | 1.158E-05 |
|---|
| neural plate morphogenesis | GO:0001839 | | 1.422E-08 | 8.686E-06 |
|---|
| neural plate development | GO:0001840 | | 2.842E-08 | 1.389E-05 |
|---|
| cytokinesis | GO:0000910 | | 1.652E-07 | 6.725E-05 |
|---|
| substrate-bound cell migration | GO:0006929 | | 2.335E-07 | 8.15E-05 |
|---|
| glycolysis | GO:0006096 | | 2.4E-07 | 7.329E-05 |
|---|
| establishment of cell polarity | GO:0030010 | | 3.111E-07 | 8.445E-05 |
|---|
| cellular carbohydrate catabolic process | GO:0044275 | | 4.041E-07 | 9.873E-05 |
|---|
| glucose catabolic process | GO:0006007 | | 5.357E-07 | 1.19E-04 |
|---|
Ivshina_GPL96-GPL97 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| alcohol catabolic process | GO:0046164 | | 9.831E-10 | 2.365E-06 |
|---|
| polyol catabolic process | GO:0046174 | | 1.704E-08 | 2.05E-05 |
|---|
| substrate-bound cell migration. cell extension | GO:0006930 | | 1.704E-08 | 1.367E-05 |
|---|
| glycolysis | GO:0006096 | | 2.77E-07 | 1.666E-04 |
|---|
| substrate-bound cell migration | GO:0006929 | | 2.797E-07 | 1.346E-04 |
|---|
| cellular carbohydrate catabolic process | GO:0044275 | | 4.84E-07 | 1.941E-04 |
|---|
| glucose catabolic process | GO:0006007 | | 6.285E-07 | 2.16E-04 |
|---|
| fructose metabolic process | GO:0006000 | | 9.453E-07 | 2.843E-04 |
|---|
| hexose catabolic process | GO:0019320 | | 1.398E-06 | 3.736E-04 |
|---|
| monosaccharide catabolic process | GO:0046365 | | 2.321E-06 | 5.585E-04 |
|---|
| alditol metabolic process | GO:0019400 | | 3.394E-06 | 7.423E-04 |
|---|
Loi_GPL570 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| alcohol catabolic process | GO:0046164 | | 7.574E-10 | 1.85E-06 |
|---|
| polyol catabolic process | GO:0046174 | | 1.422E-08 | 1.737E-05 |
|---|
| substrate-bound cell migration. cell extension | GO:0006930 | | 1.422E-08 | 1.158E-05 |
|---|
| neural plate morphogenesis | GO:0001839 | | 1.422E-08 | 8.686E-06 |
|---|
| neural plate development | GO:0001840 | | 2.842E-08 | 1.389E-05 |
|---|
| cytokinesis | GO:0000910 | | 1.652E-07 | 6.725E-05 |
|---|
| substrate-bound cell migration | GO:0006929 | | 2.335E-07 | 8.15E-05 |
|---|
| glycolysis | GO:0006096 | | 2.4E-07 | 7.329E-05 |
|---|
| establishment of cell polarity | GO:0030010 | | 3.111E-07 | 8.445E-05 |
|---|
| cellular carbohydrate catabolic process | GO:0044275 | | 4.041E-07 | 9.873E-05 |
|---|
| glucose catabolic process | GO:0006007 | | 5.357E-07 | 1.19E-04 |
|---|
Loi_GPL96-GPL97 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| alcohol catabolic process | GO:0046164 | | 9.831E-10 | 2.365E-06 |
|---|
| polyol catabolic process | GO:0046174 | | 1.704E-08 | 2.05E-05 |
|---|
| substrate-bound cell migration. cell extension | GO:0006930 | | 1.704E-08 | 1.367E-05 |
|---|
| glycolysis | GO:0006096 | | 2.77E-07 | 1.666E-04 |
|---|
| substrate-bound cell migration | GO:0006929 | | 2.797E-07 | 1.346E-04 |
|---|
| cellular carbohydrate catabolic process | GO:0044275 | | 4.84E-07 | 1.941E-04 |
|---|
| glucose catabolic process | GO:0006007 | | 6.285E-07 | 2.16E-04 |
|---|
| fructose metabolic process | GO:0006000 | | 9.453E-07 | 2.843E-04 |
|---|
| hexose catabolic process | GO:0019320 | | 1.398E-06 | 3.736E-04 |
|---|
| monosaccharide catabolic process | GO:0046365 | | 2.321E-06 | 5.585E-04 |
|---|
| alditol metabolic process | GO:0019400 | | 3.394E-06 | 7.423E-04 |
|---|
Parker_GPL1390 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| cell cortex | GO:0005938 | | 4.511E-07 | 1.611E-03 |
|---|
| actin filament | GO:0005884 | | 1.552E-06 | 2.77E-03 |
|---|
| embryonic camera-type eye development | GO:0031076 | | 8.371E-06 | 9.964E-03 |
|---|
| skeletal myofibril assembly | GO:0014866 | | 8.371E-06 | 7.473E-03 |
|---|
| neural plate development | GO:0001840 | | 8.371E-06 | 5.978E-03 |
|---|
| negative regulation of protein ubiquitination | GO:0031397 | | 8.371E-06 | 4.982E-03 |
|---|
| substrate-bound cell migration. cell extension | GO:0006930 | | 8.371E-06 | 4.27E-03 |
|---|
| lamellipodium | GO:0030027 | | 1.226E-05 | 5.474E-03 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 1.255E-05 | 4.979E-03 |
|---|
| enucleate erythrocyte differentiation | GO:0043353 | | 1.255E-05 | 4.481E-03 |
|---|
| definitive hemopoiesis | GO:0060216 | | 1.255E-05 | 4.074E-03 |
|---|
Parker_GPL887 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| cell cortex | GO:0005938 | | 3.154E-07 | 1.15E-03 |
|---|
| actin filament | GO:0005884 | | 1.026E-06 | 1.871E-03 |
|---|
| lamellipodium | GO:0030027 | | 5.354E-06 | 6.51E-03 |
|---|
| muscle thin filament assembly | GO:0030240 | | 6.839E-06 | 6.237E-03 |
|---|
| enucleate erythrocyte differentiation | GO:0043353 | | 6.839E-06 | 4.99E-03 |
|---|
| neural plate morphogenesis | GO:0001839 | | 6.839E-06 | 4.158E-03 |
|---|
| hemopoietic progenitor cell differentiation | GO:0002244 | | 6.839E-06 | 3.564E-03 |
|---|
| positive regulation of cell-matrix adhesion | GO:0001954 | | 6.839E-06 | 3.118E-03 |
|---|
| RNA polymerase II carboxy-terminal domain kinase activity | GO:0008353 | | 6.839E-06 | 2.772E-03 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 1.025E-05 | 3.74E-03 |
|---|
| embryonic camera-type eye development | GO:0031076 | | 1.025E-05 | 3.4E-03 |
|---|
Pawitan_GPL96-GPL97 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| alcohol catabolic process | GO:0046164 | | 9.831E-10 | 2.365E-06 |
|---|
| polyol catabolic process | GO:0046174 | | 1.704E-08 | 2.05E-05 |
|---|
| substrate-bound cell migration. cell extension | GO:0006930 | | 1.704E-08 | 1.367E-05 |
|---|
| glycolysis | GO:0006096 | | 2.77E-07 | 1.666E-04 |
|---|
| substrate-bound cell migration | GO:0006929 | | 2.797E-07 | 1.346E-04 |
|---|
| cellular carbohydrate catabolic process | GO:0044275 | | 4.84E-07 | 1.941E-04 |
|---|
| glucose catabolic process | GO:0006007 | | 6.285E-07 | 2.16E-04 |
|---|
| fructose metabolic process | GO:0006000 | | 9.453E-07 | 2.843E-04 |
|---|
| hexose catabolic process | GO:0019320 | | 1.398E-06 | 3.736E-04 |
|---|
| monosaccharide catabolic process | GO:0046365 | | 2.321E-06 | 5.585E-04 |
|---|
| alditol metabolic process | GO:0019400 | | 3.394E-06 | 7.423E-04 |
|---|
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| alcohol catabolic process | GO:0046164 | | 5.1E-09 | 1.173E-05 |
|---|
| carbohydrate catabolic process | GO:0016052 | | 1.273E-08 | 1.464E-05 |
|---|
| polyol catabolic process | GO:0046174 | | 5.037E-08 | 3.861E-05 |
|---|
| substrate-bound cell migration. cell extension | GO:0006930 | | 5.037E-08 | 2.896E-05 |
|---|
| substrate-bound cell migration | GO:0006929 | | 4.21E-07 | 1.937E-04 |
|---|
| cellular carbohydrate catabolic process | GO:0044275 | | 8.251E-07 | 3.163E-04 |
|---|
| glycolysis | GO:0006096 | | 1.045E-06 | 3.433E-04 |
|---|
| glucose catabolic process | GO:0006007 | | 2.404E-06 | 6.913E-04 |
|---|
| fructose metabolic process | GO:0006000 | | 2.783E-06 | 7.113E-04 |
|---|
| hexose catabolic process | GO:0019320 | | 4.771E-06 | 1.097E-03 |
|---|
| alditol metabolic process | GO:0019400 | | 5.639E-06 | 1.179E-03 |
|---|
Sotiriou file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| alcohol catabolic process | GO:0046164 | | 5.1E-09 | 1.173E-05 |
|---|
| carbohydrate catabolic process | GO:0016052 | | 1.273E-08 | 1.464E-05 |
|---|
| polyol catabolic process | GO:0046174 | | 5.037E-08 | 3.861E-05 |
|---|
| substrate-bound cell migration. cell extension | GO:0006930 | | 5.037E-08 | 2.896E-05 |
|---|
| substrate-bound cell migration | GO:0006929 | | 4.21E-07 | 1.937E-04 |
|---|
| cellular carbohydrate catabolic process | GO:0044275 | | 8.251E-07 | 3.163E-04 |
|---|
| glycolysis | GO:0006096 | | 1.045E-06 | 3.433E-04 |
|---|
| glucose catabolic process | GO:0006007 | | 2.404E-06 | 6.913E-04 |
|---|
| fructose metabolic process | GO:0006000 | | 2.783E-06 | 7.113E-04 |
|---|
| hexose catabolic process | GO:0019320 | | 4.771E-06 | 1.097E-03 |
|---|
| alditol metabolic process | GO:0019400 | | 5.639E-06 | 1.179E-03 |
|---|
Van-De-Vijver file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| positive regulation of cellular component organization | GO:0051130 | | 8.826E-07 | 1.627E-03 |
|---|
| cytokinesis | GO:0000910 | | 2.355E-06 | 2.17E-03 |
|---|
| positive regulation of organelle organization | GO:0010638 | | 1.082E-05 | 6.646E-03 |
|---|
| substrate-bound cell migration. cell extension | GO:0006930 | | 1.518E-05 | 6.995E-03 |
|---|
| establishment of cell polarity | GO:0030010 | | 1.518E-05 | 5.596E-03 |
|---|
| regulation of actin cytoskeleton organization | GO:0032956 | | 2.137E-05 | 6.565E-03 |
|---|
| regulation of focal adhesion formation | GO:0051893 | | 2.276E-05 | 5.992E-03 |
|---|
| regulation of Rho GTPase activity | GO:0032319 | | 2.276E-05 | 5.243E-03 |
|---|
| positive regulation of Ras GTPase activity | GO:0032320 | | 2.276E-05 | 4.66E-03 |
|---|
| regulation of actin filament-based process | GO:0032970 | | 2.285E-05 | 4.211E-03 |
|---|
| actin filament organization | GO:0007015 | | 2.6E-05 | 4.356E-03 |
|---|
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| alcohol catabolic process | GO:0046164 | | 5.1E-09 | 1.173E-05 |
|---|
| carbohydrate catabolic process | GO:0016052 | | 1.273E-08 | 1.464E-05 |
|---|
| polyol catabolic process | GO:0046174 | | 5.037E-08 | 3.861E-05 |
|---|
| substrate-bound cell migration. cell extension | GO:0006930 | | 5.037E-08 | 2.896E-05 |
|---|
| substrate-bound cell migration | GO:0006929 | | 4.21E-07 | 1.937E-04 |
|---|
| cellular carbohydrate catabolic process | GO:0044275 | | 8.251E-07 | 3.163E-04 |
|---|
| glycolysis | GO:0006096 | | 1.045E-06 | 3.433E-04 |
|---|
| glucose catabolic process | GO:0006007 | | 2.404E-06 | 6.913E-04 |
|---|
| fructose metabolic process | GO:0006000 | | 2.783E-06 | 7.113E-04 |
|---|
| hexose catabolic process | GO:0019320 | | 4.771E-06 | 1.097E-03 |
|---|
| alditol metabolic process | GO:0019400 | | 5.639E-06 | 1.179E-03 |
|---|
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| alcohol catabolic process | GO:0046164 | | 2.992E-09 | 7.1E-06 |
|---|
| carbohydrate catabolic process | GO:0016052 | | 7.477E-09 | 8.871E-06 |
|---|
| polyol catabolic process | GO:0046174 | | 3.091E-08 | 2.445E-05 |
|---|
| substrate-bound cell migration. cell extension | GO:0006930 | | 3.091E-08 | 1.834E-05 |
|---|
| substrate-bound cell migration | GO:0006929 | | 3.69E-07 | 1.751E-04 |
|---|
| cellular carbohydrate catabolic process | GO:0044275 | | 6.752E-07 | 2.67E-04 |
|---|
| glycolysis | GO:0006096 | | 8.5E-07 | 2.882E-04 |
|---|
| glucose catabolic process | GO:0006007 | | 1.934E-06 | 5.737E-04 |
|---|
| fructose metabolic process | GO:0006000 | | 2.076E-06 | 5.474E-04 |
|---|
| hexose catabolic process | GO:0019320 | | 3.599E-06 | 8.539E-04 |
|---|
| alditol metabolic process | GO:0019400 | | 4.678E-06 | 1.009E-03 |
|---|
