Study run-a2
Study informations
103 subnetworks in total page | file
306 genes associated page | file
Enriched GO terms page
General informations
General Index page
Study Index page
Subnetwork 1894-2-real
score
| Dataset | Score | P-val 1 | P-val 2 | P-val 3 |
|---|
| Desmedt | 0.1420 | 3.043e-02 | 2.633e-02 | 2.037e-01 |
|---|
| IPC-NIBC-129 | 0.3195 | 7.301e-02 | 1.032e-01 | 5.560e-01 |
|---|
| Ivshina_GPL96-GPL97 | 0.1954 | 2.218e-02 | 3.440e-02 | 4.112e-01 |
|---|
| Loi_GPL570 | 0.2039 | 1.113e-01 | 1.238e-01 | 3.980e-01 |
|---|
| Loi_GPL96-GPL97 | 0.1578 | 0.000e+00 | 0.000e+00 | 0.000e+00 |
|---|
| Parker_GPL1390 | 0.2029 | 7.129e-02 | 8.707e-02 | 4.752e-01 |
|---|
| Parker_GPL887 | 0.1779 | 5.089e-01 | 5.277e-01 | 5.735e-01 |
|---|
| Pawitan_GPL96-GPL97 | 0.3615 | 2.581e-01 | 1.928e-01 | 8.270e-01 |
|---|
| Schmidt | 0.2181 | 1.695e-02 | 1.939e-02 | 2.089e-01 |
|---|
| Sotiriou | 0.2680 | 2.517e-02 | 1.981e-02 | 3.124e-01 |
|---|
| Van-De-Vijver | 0.2291 | 1.067e-03 | 1.535e-03 | 6.128e-02 |
|---|
| Zhang | 0.2807 | 1.387e-01 | 9.173e-02 | 2.884e-01 |
|---|
| Zhou | 0.4167 | 6.558e-02 | 5.391e-02 | 3.877e-01 |
|---|
Expression data for subnetwork 1894-2-real in each dataset
Desmedt |
IPC-NIBC-129 |
Ivshina_GPL96-GPL97 |
Loi_GPL570 |
Loi_GPL96-GPL97 |
Parker_GPL1390 |
Parker_GPL887 |
Pawitan_GPL96-GPL97 |
Schmidt |
Sotiriou |
Van-De-Vijver |
Zhang |
Zhou |
Subnetwork structure for each dataset
- Desmedt
Score for each gene in subnetwork 1894-2-real in each dataset
| Gene Symbol | Links | Frequency | Frequency Rank | Subnetwork score rank | Global rank |
Desmedt | IPC-NIBC-129 | Ivshina_GPL96-GPL97 | Loi_GPL570 | Loi_GPL96-GPL97 | Parker_GPL1390 | Parker_GPL887 | Pawitan_GPL96-GPL97 | Schmidt | Sotiriou | Van-De-Vijver | Zhang | Zhou |
|---|
| cdkn3 |   | 53 | 5 | 29 | 22 | 0.114 | 0.269 | 0.199 | 0.136 | 0.193 | 0.166 | -0.009 | 0.323 | 0.186 | 0.198 | 0.201 | 0.271 | 0.372 |
|---|
| ect2 | | 1 | 116 | 257 | 259 | 0.117 | 0.203 | 0.142 | 0.090 | 0.135 | 0.057 | 0.066 | 0.213 | 0.223 | 0.177 | 0.105 | 0.178 | 0.334 |
|---|
| cdkn1a | | 44 | 7 | 1 | 4 | 0.115 | -0.020 | 0.065 | 0.082 | 0.099 | 0.124 | 0.055 | 0.087 | 0.068 | 0.144 | undef | -0.201 | 0.069 |
|---|
| tle1 | | 47 | 6 | 1 | 3 | 0.062 | 0.235 | -0.032 | -0.177 | 0.033 | 0.085 | 0.339 | 0.068 | 0.126 | -0.027 | 0.170 | 0.068 | 0.025 |
|---|
| ccnb1 | | 42 | 8 | 56 | 39 | 0.082 | 0.246 | 0.212 | 0.224 | 0.256 | 0.099 | 0.126 | 0.351 | 0.129 | 0.249 | undef | 0.167 | 0.398 |
|---|
| ccnd1 | | 92 | 2 | 18 | 12 | 0.127 | -0.183 | 0.062 | 0.190 | 0.157 | -0.002 | -0.190 | 0.105 | -0.107 | 0.174 | undef | 0.144 | 0.290 |
|---|
| cdc2 | | 96 | 1 | 1 | 1 | 0.073 | 0.247 | 0.206 | 0.172 | 0.247 | 0.153 | -0.131 | 0.282 | 0.226 | 0.221 | 0.162 | 0.297 | 0.336 |
|---|
| en1 | | 1 | 116 | 257 | 259 | -0.003 | 0.275 | 0.001 | 0.137 | 0.053 | 0.086 | 0.385 | 0.108 | 0.135 | 0.023 | 0.101 | 0.116 | -0.141 |
|---|
| cdc25a | | 8 | 26 | 95 | 79 | -0.019 | 0.221 | 0.093 | 0.158 | 0.120 | -0.061 | 0.406 | 0.207 | 0.211 | 0.016 | -0.019 | 0.183 | 0.264 |
|---|
| en2 | | 1 | 116 | 257 | 259 | -0.100 | 0.300 | -0.036 | 0.148 | 0.074 | 0.091 | 0.046 | 0.030 | -0.051 | 0.118 | 0.076 | -0.023 | 0.160 |
|---|
GO Enrichment output for subnetwork 1894-2-real in each dataset
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 |  | 1.041E-09 | 2.394E-06 |
|---|
| interphase of mitotic cell cycle | GO:0051329 | | 1.513E-08 | 1.74E-05 |
|---|
| midbrain development | GO:0030901 | | 1.525E-08 | 1.169E-05 |
|---|
| interphase | GO:0051325 | | 1.7E-08 | 9.774E-06 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 7.376E-08 | 3.393E-05 |
|---|
| G2/M transition of mitotic cell cycle | GO:0000086 | | 1.005E-06 | 3.852E-04 |
|---|
| hindbrain development | GO:0030902 | | 3.051E-06 | 1.002E-03 |
|---|
| neural tube patterning | GO:0021532 | | 8.885E-06 | 2.554E-03 |
|---|
| response to UV | GO:0009411 | | 1.13E-05 | 2.887E-03 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 1.864E-05 | 4.287E-03 |
|---|
| negative regulation of cyclin-dependent protein kinase activity | GO:0045736 | | 2.484E-05 | 5.193E-03 |
|---|
IPC-NIBC-129 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 2.285E-10 | 5.582E-07 |
|---|
| interphase of mitotic cell cycle | GO:0051329 | | 3.646E-09 | 4.454E-06 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 1.765E-08 | 1.437E-05 |
|---|
| midbrain development | GO:0030901 | | 2.462E-08 | 1.504E-05 |
|---|
| G2/M transition of mitotic cell cycle | GO:0000086 | | 4.691E-07 | 2.292E-04 |
|---|
| hindbrain development | GO:0030902 | | 1.009E-06 | 4.108E-04 |
|---|
| response to UV | GO:0009411 | | 5.287E-06 | 1.845E-03 |
|---|
| neural tube patterning | GO:0021532 | | 5.477E-06 | 1.673E-03 |
|---|
| anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process | GO:0031145 | | 1.005E-05 | 2.727E-03 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 1.022E-05 | 2.496E-03 |
|---|
| positive regulation of ubiquitin-protein ligase activity during mitotic cell cycle | GO:0051437 | | 1.05E-05 | 2.332E-03 |
|---|
Ivshina_GPL96-GPL97 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 3.078E-10 | 7.405E-07 |
|---|
| interphase of mitotic cell cycle | GO:0051329 | | 4.192E-09 | 5.043E-06 |
|---|
| interphase | GO:0051325 | | 4.908E-09 | 3.936E-06 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 2.266E-08 | 1.363E-05 |
|---|
| midbrain development | GO:0030901 | | 2.996E-08 | 1.442E-05 |
|---|
| G2/M transition of mitotic cell cycle | GO:0000086 | | 5.706E-07 | 2.288E-04 |
|---|
| hindbrain development | GO:0030902 | | 1.227E-06 | 4.217E-04 |
|---|
| neural tube patterning | GO:0021532 | | 4.185E-06 | 1.259E-03 |
|---|
| response to UV | GO:0009411 | | 5.743E-06 | 1.535E-03 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 1.17E-05 | 2.816E-03 |
|---|
| anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process | GO:0031145 | | 1.221E-05 | 2.67E-03 |
|---|
Loi_GPL570 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 2.285E-10 | 5.582E-07 |
|---|
| interphase of mitotic cell cycle | GO:0051329 | | 3.646E-09 | 4.454E-06 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 1.765E-08 | 1.437E-05 |
|---|
| midbrain development | GO:0030901 | | 2.462E-08 | 1.504E-05 |
|---|
| G2/M transition of mitotic cell cycle | GO:0000086 | | 4.691E-07 | 2.292E-04 |
|---|
| hindbrain development | GO:0030902 | | 1.009E-06 | 4.108E-04 |
|---|
| response to UV | GO:0009411 | | 5.287E-06 | 1.845E-03 |
|---|
| neural tube patterning | GO:0021532 | | 5.477E-06 | 1.673E-03 |
|---|
| anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process | GO:0031145 | | 1.005E-05 | 2.727E-03 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 1.022E-05 | 2.496E-03 |
|---|
| positive regulation of ubiquitin-protein ligase activity during mitotic cell cycle | GO:0051437 | | 1.05E-05 | 2.332E-03 |
|---|
Loi_GPL96-GPL97 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 3.078E-10 | 7.405E-07 |
|---|
| interphase of mitotic cell cycle | GO:0051329 | | 4.192E-09 | 5.043E-06 |
|---|
| interphase | GO:0051325 | | 4.908E-09 | 3.936E-06 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 2.266E-08 | 1.363E-05 |
|---|
| midbrain development | GO:0030901 | | 2.996E-08 | 1.442E-05 |
|---|
| G2/M transition of mitotic cell cycle | GO:0000086 | | 5.706E-07 | 2.288E-04 |
|---|
| hindbrain development | GO:0030902 | | 1.227E-06 | 4.217E-04 |
|---|
| neural tube patterning | GO:0021532 | | 4.185E-06 | 1.259E-03 |
|---|
| response to UV | GO:0009411 | | 5.743E-06 | 1.535E-03 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 1.17E-05 | 2.816E-03 |
|---|
| anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process | GO:0031145 | | 1.221E-05 | 2.67E-03 |
|---|
Parker_GPL1390 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 4.57E-11 | 1.632E-07 |
|---|
| interphase of mitotic cell cycle | GO:0051329 | | 5.842E-10 | 1.043E-06 |
|---|
| cyclin-dependent protein kinase holoenzyme complex | GO:0000307 | | 8.812E-09 | 1.049E-05 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 1.036E-08 | 9.245E-06 |
|---|
| midbrain development | GO:0030901 | | 1.887E-08 | 1.348E-05 |
|---|
| cyclin-dependent protein kinase regulator activity | GO:0016538 | | 2.594E-08 | 1.544E-05 |
|---|
| G2/M transition of mitotic cell cycle | GO:0000086 | | 1.067E-07 | 5.444E-05 |
|---|
| hindbrain development | GO:0030902 | | 7.748E-07 | 3.459E-04 |
|---|
| response to UV | GO:0009411 | | 2.863E-06 | 1.136E-03 |
|---|
| neural tube patterning | GO:0021532 | | 3.314E-06 | 1.183E-03 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 4.969E-06 | 1.613E-03 |
|---|
Parker_GPL887 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 3.06E-11 | 1.116E-07 |
|---|
| interphase of mitotic cell cycle | GO:0051329 | | 3.315E-10 | 6.047E-07 |
|---|
| interphase | GO:0051325 | | 3.755E-10 | 4.566E-07 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 5.016E-09 | 4.575E-06 |
|---|
| cyclin-dependent protein kinase holoenzyme complex | GO:0000307 | | 6.139E-09 | 4.479E-06 |
|---|
| midbrain development | GO:0030901 | | 1.807E-08 | 1.099E-05 |
|---|
| cyclin-dependent protein kinase regulator activity | GO:0016538 | | 3.983E-08 | 2.076E-05 |
|---|
| G2/M transition of mitotic cell cycle | GO:0000086 | | 6.125E-08 | 2.793E-05 |
|---|
| hindbrain development | GO:0030902 | | 8.448E-07 | 3.424E-04 |
|---|
| response to UV | GO:0009411 | | 1.539E-06 | 5.616E-04 |
|---|
| RNA polymerase II carboxy-terminal domain kinase activity | GO:0008353 | | 2.566E-06 | 8.51E-04 |
|---|
Pawitan_GPL96-GPL97 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 3.078E-10 | 7.405E-07 |
|---|
| interphase of mitotic cell cycle | GO:0051329 | | 4.192E-09 | 5.043E-06 |
|---|
| interphase | GO:0051325 | | 4.908E-09 | 3.936E-06 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 2.266E-08 | 1.363E-05 |
|---|
| midbrain development | GO:0030901 | | 2.996E-08 | 1.442E-05 |
|---|
| G2/M transition of mitotic cell cycle | GO:0000086 | | 5.706E-07 | 2.288E-04 |
|---|
| hindbrain development | GO:0030902 | | 1.227E-06 | 4.217E-04 |
|---|
| neural tube patterning | GO:0021532 | | 4.185E-06 | 1.259E-03 |
|---|
| response to UV | GO:0009411 | | 5.743E-06 | 1.535E-03 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 1.17E-05 | 2.816E-03 |
|---|
| anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process | GO:0031145 | | 1.221E-05 | 2.67E-03 |
|---|
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 1.041E-09 | 2.394E-06 |
|---|
| interphase of mitotic cell cycle | GO:0051329 | | 1.513E-08 | 1.74E-05 |
|---|
| midbrain development | GO:0030901 | | 1.525E-08 | 1.169E-05 |
|---|
| interphase | GO:0051325 | | 1.7E-08 | 9.774E-06 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 7.376E-08 | 3.393E-05 |
|---|
| G2/M transition of mitotic cell cycle | GO:0000086 | | 1.005E-06 | 3.852E-04 |
|---|
| hindbrain development | GO:0030902 | | 3.051E-06 | 1.002E-03 |
|---|
| neural tube patterning | GO:0021532 | | 8.885E-06 | 2.554E-03 |
|---|
| response to UV | GO:0009411 | | 1.13E-05 | 2.887E-03 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 1.864E-05 | 4.287E-03 |
|---|
| negative regulation of cyclin-dependent protein kinase activity | GO:0045736 | | 2.484E-05 | 5.193E-03 |
|---|
Sotiriou file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 1.041E-09 | 2.394E-06 |
|---|
| interphase of mitotic cell cycle | GO:0051329 | | 1.513E-08 | 1.74E-05 |
|---|
| midbrain development | GO:0030901 | | 1.525E-08 | 1.169E-05 |
|---|
| interphase | GO:0051325 | | 1.7E-08 | 9.774E-06 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 7.376E-08 | 3.393E-05 |
|---|
| G2/M transition of mitotic cell cycle | GO:0000086 | | 1.005E-06 | 3.852E-04 |
|---|
| hindbrain development | GO:0030902 | | 3.051E-06 | 1.002E-03 |
|---|
| neural tube patterning | GO:0021532 | | 8.885E-06 | 2.554E-03 |
|---|
| response to UV | GO:0009411 | | 1.13E-05 | 2.887E-03 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 1.864E-05 | 4.287E-03 |
|---|
| negative regulation of cyclin-dependent protein kinase activity | GO:0045736 | | 2.484E-05 | 5.193E-03 |
|---|
Van-De-Vijver file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| embryonic forelimb morphogenesis | GO:0035115 | | 7.091E-06 | 0.0130691 |
|---|
| forelimb morphogenesis | GO:0035136 | | 1.139E-05 | 0.01049788 |
|---|
| hindbrain development | GO:0030902 | | 1.392E-05 | 8.552E-03 |
|---|
| proximal/distal pattern formation | GO:0009954 | | 1.392E-05 | 6.414E-03 |
|---|
| negative regulation of Wnt receptor signaling pathway | GO:0030178 | | 1.973E-05 | 7.274E-03 |
|---|
| pigmentation | GO:0043473 | | 3.438E-05 | 0.01056129 |
|---|
| dorsal/ventral pattern formation | GO:0009953 | | 4.321E-05 | 0.01137781 |
|---|
| neural tube development | GO:0021915 | | 4.801E-05 | 0.01105961 |
|---|
| regulation of Wnt receptor signaling pathway | GO:0030111 | | 5.834E-05 | 0.0119475 |
|---|
| embryonic limb morphogenesis | GO:0030326 | | 1.587E-04 | 0.02924601 |
|---|
| regulation of Rho protein signal transduction | GO:0035023 | | 1.677E-04 | 0.02810109 |
|---|
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 1.041E-09 | 2.394E-06 |
|---|
| interphase of mitotic cell cycle | GO:0051329 | | 1.513E-08 | 1.74E-05 |
|---|
| midbrain development | GO:0030901 | | 1.525E-08 | 1.169E-05 |
|---|
| interphase | GO:0051325 | | 1.7E-08 | 9.774E-06 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 7.376E-08 | 3.393E-05 |
|---|
| G2/M transition of mitotic cell cycle | GO:0000086 | | 1.005E-06 | 3.852E-04 |
|---|
| hindbrain development | GO:0030902 | | 3.051E-06 | 1.002E-03 |
|---|
| neural tube patterning | GO:0021532 | | 8.885E-06 | 2.554E-03 |
|---|
| response to UV | GO:0009411 | | 1.13E-05 | 2.887E-03 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 1.864E-05 | 4.287E-03 |
|---|
| negative regulation of cyclin-dependent protein kinase activity | GO:0045736 | | 2.484E-05 | 5.193E-03 |
|---|
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 6.689E-10 | 1.587E-06 |
|---|
| interphase of mitotic cell cycle | GO:0051329 | | 8.466E-09 | 1.004E-05 |
|---|
| interphase | GO:0051325 | | 9.501E-09 | 7.515E-06 |
|---|
| midbrain development | GO:0030901 | | 1.036E-08 | 6.145E-06 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 4.855E-08 | 2.304E-05 |
|---|
| G2/M transition of mitotic cell cycle | GO:0000086 | | 6.834E-07 | 2.703E-04 |
|---|
| hindbrain development | GO:0030902 | | 3.338E-06 | 1.132E-03 |
|---|
| response to UV | GO:0009411 | | 8.218E-06 | 2.438E-03 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 1.441E-05 | 3.798E-03 |
|---|
| neural tube patterning | GO:0021532 | | 1.441E-05 | 3.418E-03 |
|---|
| negative regulation of cyclin-dependent protein kinase activity | GO:0045736 | | 1.92E-05 | 4.142E-03 |
|---|
