Study run-a2

Study informations

103 subnetworks in total page | file

306 genes associated page | file

Enriched GO terms page

General informations

General Index page

Study Index page

Subnetwork 11316-0-real

score

Dataset	Score	P-val 1	P-val 2	P-val 3
Desmedt	0.2159	1.128e-02	8.585e-03	9.591e-02
IPC-NIBC-129	0.2739	4.087e-02	5.934e-02	3.906e-01
Ivshina_GPL96-GPL97	0.2440	8.996e-03	1.511e-02	2.570e-01
Loi_GPL570	0.2481	6.010e-02	6.805e-02	2.525e-01
Loi_GPL96-GPL97	0.1702	0.000e+00	7.000e-06	0.000e+00
Parker_GPL1390	0.2447	9.991e-02	1.200e-01	5.605e-01
Parker_GPL887	0.0948	3.261e-01	3.445e-01	3.506e-01
Pawitan_GPL96-GPL97	0.4237	5.661e-01	4.964e-01	9.805e-01
Schmidt	0.1941	3.130e-02	3.725e-02	3.136e-01
Sotiriou	0.3334	8.518e-03	6.485e-03	1.718e-01
Van-De-Vijver	0.2716	9.690e-04	1.394e-03	5.747e-02
Zhang	0.2434	1.151e-01	7.253e-02	2.470e-01
Zhou	0.4221	3.691e-02	2.528e-02	2.452e-01

Expression data for subnetwork 11316-0-real in each dataset

Desmedt | IPC-NIBC-129 | Ivshina_GPL96-GPL97 | Loi_GPL570 | Loi_GPL96-GPL97 | Parker_GPL1390 | Parker_GPL887 | Pawitan_GPL96-GPL97 | Schmidt | Sotiriou | Van-De-Vijver | Zhang | Zhou |

Subnetwork structure for each dataset

Desmedt IPC-NIBC-129 Ivshina_GPL96-GPL97 Loi_GPL570 Loi_GPL96-GPL97 Parker_GPL1390 Parker_GPL887 Pawitan_GPL96-GPL97 Schmidt Sotiriou Van-De-Vijver Zhang Zhou

Desmedt

Score for each gene in subnetwork 11316-0-real in each dataset

Gene Symbol	Links	Frequency	Frequency Rank	Subnetwork score rank	Global rank	Desmedt	IPC-NIBC-129	Ivshina_GPL96-GPL97	Loi_GPL570	Loi_GPL96-GPL97	Parker_GPL1390	Parker_GPL887	Pawitan_GPL96-GPL97	Schmidt	Sotiriou	Van-De-Vijver	Zhang	Zhou
cdkn3		53	5	29	22	0.114	0.269	0.199	0.136	0.193	0.166	-0.009	0.323	0.186	0.198	0.201	0.271	0.372
cdkn1a		44	7	1	4	0.115	-0.020	0.065	0.082	0.099	0.124	0.055	0.087	0.068	0.144	undef	-0.201	0.069
tle1		47	6	1	3	0.062	0.235	-0.032	-0.177	0.033	0.085	0.339	0.068	0.126	-0.027	0.170	0.068	0.025
cope		1	116	126	131	0.095	-0.013	0.169	0.138	0.126	0.099	0.046	0.240	-0.070	0.045	0.029	0.008	0.176
ccnb1		42	8	56	39	0.082	0.246	0.212	0.224	0.256	0.099	0.126	0.351	0.129	0.249	undef	0.167	0.398
arf1		1	116	126	131	0.106	0.093	0.086	-0.009	0.138	0.083	0.320	0.281	-0.012	0.175	0.175	-0.071	0.217
six1		13	17	123	96	0.097	0.114	0.095	0.149	0.151	-0.015	-0.006	0.123	0.113	0.184	0.082	0.191	0.079
ccnd1		92	2	18	12	0.127	-0.183	0.062	0.190	0.157	-0.002	-0.190	0.105	-0.107	0.174	undef	0.144	0.290
orc6l		15	11	34	28	0.094	0.270	0.084	0.114	0.106	0.240	0.256	0.234	0.192	0.105	0.258	0.175	0.160
map4		6	35	18	20	0.002	0.046	0.067	-0.043	0.034	0.119	0.159	-0.058	-0.020	0.043	0.054	-0.074	0.302
cdc2		96	1	1	1	0.073	0.247	0.206	0.172	0.247	0.153	-0.131	0.282	0.226	0.221	0.162	0.297	0.336
sfn		61	3	1	2	0.077	0.137	0.111	0.172	0.112	0.119	0.141	0.219	0.100	0.147	0.158	0.079	0.181
npm1		1	116	126	131	-0.005	0.172	0.085	0.197	0.093	0.221	-0.227	-0.050	0.065	0.169	-0.177	-0.086	0.199

GO Enrichment output for subnetwork 11316-0-real in each dataset

Desmedt file

Name	Accession Number	Link	P-val	Corrected P-val
regulation of centrosome cycle	GO:0046605		2.253E-11	5.182E-08
regulation of microtubule cytoskeleton organization	GO:0070507		3.82E-10	4.393E-07
regulation of microtubule-based process	GO:0032886		8.24E-10	6.318E-07
ribosome assembly	GO:0042255		1.478E-09	8.497E-07
centrosome cycle	GO:0007098		6.087E-09	2.8E-06
regulation of cyclin-dependent protein kinase activity	GO:0000079		1.329E-08	5.093E-06
cell aging	GO:0007569		2.652E-08	8.713E-06
microtubule organizing center organization	GO:0031023		3.238E-08	9.309E-06
negative regulation of organelle organization	GO:0010639		7.741E-08	1.978E-05
positive regulation of NF-kappaB transcription factor activity	GO:0051092		1.203E-07	2.767E-05
interphase of mitotic cell cycle	GO:0051329		1.899E-07	3.97E-05

IPC-NIBC-129 file

Name	Accession Number	Link	P-val	Corrected P-val
regulation of centrosome cycle	GO:0046605		4.963E-12	1.212E-08
regulation of microtubule cytoskeleton organization	GO:0070507		1.537E-10	1.877E-07
regulation of microtubule-based process	GO:0032886		3.925E-10	3.196E-07
ribosome assembly	GO:0042255		9.869E-10	6.027E-07
centrosome cycle	GO:0007098		3.008E-09	1.47E-06
regulation of cyclin-dependent protein kinase activity	GO:0000079		3.714E-09	1.512E-06
cell aging	GO:0007569		7.169E-09	2.502E-06
microtubule organizing center organization	GO:0031023		1.461E-08	4.461E-06
negative regulation of organelle organization	GO:0010639		2.096E-08	5.689E-06
positive regulation of NF-kappaB transcription factor activity	GO:0051092		3.498E-08	8.546E-06
interphase of mitotic cell cycle	GO:0051329		5.841E-08	1.297E-05

Ivshina_GPL96-GPL97 file

Name	Accession Number	Link	P-val	Corrected P-val
regulation of centrosome cycle	GO:0046605		7.632E-12	1.836E-08
regulation of microtubule cytoskeleton organization	GO:0070507		1.831E-10	2.203E-07
regulation of microtubule-based process	GO:0032886		4.98E-10	3.994E-07
ribosome assembly	GO:0042255		1.084E-09	6.522E-07
centrosome cycle	GO:0007098		4.621E-09	2.224E-06
regulation of cyclin-dependent protein kinase activity	GO:0000079		6.307E-09	2.529E-06
cell aging	GO:0007569		9.016E-09	3.099E-06
microtubule organizing center organization	GO:0031023		2.243E-08	6.746E-06
negative regulation of organelle organization	GO:0010639		3.125E-08	8.354E-06
positive regulation of NF-kappaB transcription factor activity	GO:0051092		5.368E-08	1.292E-05
interphase of mitotic cell cycle	GO:0051329		8.456E-08	1.85E-05

Loi_GPL570 file

Name	Accession Number	Link	P-val	Corrected P-val
regulation of centrosome cycle	GO:0046605		4.963E-12	1.212E-08
regulation of microtubule cytoskeleton organization	GO:0070507		1.537E-10	1.877E-07
regulation of microtubule-based process	GO:0032886		3.925E-10	3.196E-07
ribosome assembly	GO:0042255		9.869E-10	6.027E-07
centrosome cycle	GO:0007098		3.008E-09	1.47E-06
regulation of cyclin-dependent protein kinase activity	GO:0000079		3.714E-09	1.512E-06
cell aging	GO:0007569		7.169E-09	2.502E-06
microtubule organizing center organization	GO:0031023		1.461E-08	4.461E-06
negative regulation of organelle organization	GO:0010639		2.096E-08	5.689E-06
positive regulation of NF-kappaB transcription factor activity	GO:0051092		3.498E-08	8.546E-06
interphase of mitotic cell cycle	GO:0051329		5.841E-08	1.297E-05

Loi_GPL96-GPL97 file

Name	Accession Number	Link	P-val	Corrected P-val
regulation of centrosome cycle	GO:0046605		7.632E-12	1.836E-08
regulation of microtubule cytoskeleton organization	GO:0070507		1.831E-10	2.203E-07
regulation of microtubule-based process	GO:0032886		4.98E-10	3.994E-07
ribosome assembly	GO:0042255		1.084E-09	6.522E-07
centrosome cycle	GO:0007098		4.621E-09	2.224E-06
regulation of cyclin-dependent protein kinase activity	GO:0000079		6.307E-09	2.529E-06
cell aging	GO:0007569		9.016E-09	3.099E-06
microtubule organizing center organization	GO:0031023		2.243E-08	6.746E-06
negative regulation of organelle organization	GO:0010639		3.125E-08	8.354E-06
positive regulation of NF-kappaB transcription factor activity	GO:0051092		5.368E-08	1.292E-05
interphase of mitotic cell cycle	GO:0051329		8.456E-08	1.85E-05

Parker_GPL1390 file

Name	Accession Number	Link	P-val	Corrected P-val
regulation of cyclin-dependent protein kinase activity	GO:0000079		2.851E-10	1.018E-06
interphase of mitotic cell cycle	GO:0051329		3.625E-09	6.472E-06
cyclin-dependent protein kinase holoenzyme complex	GO:0000307		2.306E-08	2.745E-05
G1/S transition of mitotic cell cycle	GO:0000082		4.041E-08	3.607E-05
COPI coating of Golgi vesicle	GO:0048205		4.937E-08	3.526E-05
Golgi vesicle budding	GO:0048194		6.786E-08	4.039E-05
cyclin-dependent protein kinase regulator activity	GO:0016538		6.786E-08	3.462E-05
vesicle targeting. to. from or within Golgi	GO:0048199		9.043E-08	4.037E-05
protein serine/threonine kinase inhibitor activity	GO:0030291		1.495E-07	5.931E-05
protein kinase regulator activity	GO:0019887		1.561E-07	5.574E-05
vesicle coating	GO:0006901		1.868E-07	6.063E-05

Parker_GPL887 file

Name	Accession Number	Link	P-val	Corrected P-val
regulation of cyclin-dependent protein kinase activity	GO:0000079		2.411E-10	8.796E-07
interphase of mitotic cell cycle	GO:0051329		2.598E-09	4.739E-06
interphase	GO:0051325		2.942E-09	3.578E-06
cyclin-dependent protein kinase holoenzyme complex	GO:0000307		1.861E-08	1.697E-05
G1/S transition of mitotic cell cycle	GO:0000082		2.375E-08	1.733E-05
COPI coating of Golgi vesicle	GO:0048205		3.983E-08	2.422E-05
Golgi vesicle budding	GO:0048194		5.475E-08	2.853E-05
vesicle targeting. to. from or within Golgi	GO:0048199		7.296E-08	3.327E-05
cyclin-dependent protein kinase regulator activity	GO:0016538		1.206E-07	4.889E-05
protein kinase regulator activity	GO:0019887		1.373E-07	5.01E-05
vesicle coating	GO:0006901		1.507E-07	4.998E-05

Pawitan_GPL96-GPL97 file

Name	Accession Number	Link	P-val	Corrected P-val
regulation of centrosome cycle	GO:0046605		7.632E-12	1.836E-08
regulation of microtubule cytoskeleton organization	GO:0070507		1.831E-10	2.203E-07
regulation of microtubule-based process	GO:0032886		4.98E-10	3.994E-07
ribosome assembly	GO:0042255		1.084E-09	6.522E-07
centrosome cycle	GO:0007098		4.621E-09	2.224E-06
regulation of cyclin-dependent protein kinase activity	GO:0000079		6.307E-09	2.529E-06
cell aging	GO:0007569		9.016E-09	3.099E-06
microtubule organizing center organization	GO:0031023		2.243E-08	6.746E-06
negative regulation of organelle organization	GO:0010639		3.125E-08	8.354E-06
positive regulation of NF-kappaB transcription factor activity	GO:0051092		5.368E-08	1.292E-05
interphase of mitotic cell cycle	GO:0051329		8.456E-08	1.85E-05

Schmidt file

Name	Accession Number	Link	P-val	Corrected P-val
regulation of centrosome cycle	GO:0046605		2.253E-11	5.182E-08
regulation of microtubule cytoskeleton organization	GO:0070507		3.82E-10	4.393E-07
regulation of microtubule-based process	GO:0032886		8.24E-10	6.318E-07
ribosome assembly	GO:0042255		1.478E-09	8.497E-07
centrosome cycle	GO:0007098		6.087E-09	2.8E-06
regulation of cyclin-dependent protein kinase activity	GO:0000079		1.329E-08	5.093E-06
cell aging	GO:0007569		2.652E-08	8.713E-06
microtubule organizing center organization	GO:0031023		3.238E-08	9.309E-06
negative regulation of organelle organization	GO:0010639		7.741E-08	1.978E-05
positive regulation of NF-kappaB transcription factor activity	GO:0051092		1.203E-07	2.767E-05
interphase of mitotic cell cycle	GO:0051329		1.899E-07	3.97E-05

Sotiriou file

Name	Accession Number	Link	P-val	Corrected P-val
regulation of centrosome cycle	GO:0046605		2.253E-11	5.182E-08
regulation of microtubule cytoskeleton organization	GO:0070507		3.82E-10	4.393E-07
regulation of microtubule-based process	GO:0032886		8.24E-10	6.318E-07
ribosome assembly	GO:0042255		1.478E-09	8.497E-07
centrosome cycle	GO:0007098		6.087E-09	2.8E-06
regulation of cyclin-dependent protein kinase activity	GO:0000079		1.329E-08	5.093E-06
cell aging	GO:0007569		2.652E-08	8.713E-06
microtubule organizing center organization	GO:0031023		3.238E-08	9.309E-06
negative regulation of organelle organization	GO:0010639		7.741E-08	1.978E-05
positive regulation of NF-kappaB transcription factor activity	GO:0051092		1.203E-07	2.767E-05
interphase of mitotic cell cycle	GO:0051329		1.899E-07	3.97E-05

Van-De-Vijver file

Name	Accession Number	Link	P-val	Corrected P-val
COPI coating of Golgi vesicle	GO:0048205		8.642E-08	1.593E-04
Golgi vesicle budding	GO:0048194		1.295E-07	1.194E-04
vesicle targeting. to. from or within Golgi	GO:0048199		1.849E-07	1.136E-04
vesicle coating	GO:0006901		1.849E-07	8.521E-05
membrane budding	GO:0006900		2.541E-07	9.367E-05
retrograde vesicle-mediated transport. Golgi to ER	GO:0006890		5.595E-07	1.719E-04
vesicle targeting	GO:0006903		8.597E-07	2.263E-04
regulation of microtubule cytoskeleton organization	GO:0070507		8.597E-07	1.981E-04
regulation of microtubule-based process	GO:0032886		1.251E-06	2.562E-04
establishment of vesicle localization	GO:0051650		1.251E-06	2.306E-04
vesicle localization	GO:0051648		1.485E-06	2.487E-04

Zhang file

Name	Accession Number	Link	P-val	Corrected P-val
regulation of centrosome cycle	GO:0046605		2.253E-11	5.182E-08
regulation of microtubule cytoskeleton organization	GO:0070507		3.82E-10	4.393E-07
regulation of microtubule-based process	GO:0032886		8.24E-10	6.318E-07
ribosome assembly	GO:0042255		1.478E-09	8.497E-07
centrosome cycle	GO:0007098		6.087E-09	2.8E-06
regulation of cyclin-dependent protein kinase activity	GO:0000079		1.329E-08	5.093E-06
cell aging	GO:0007569		2.652E-08	8.713E-06
microtubule organizing center organization	GO:0031023		3.238E-08	9.309E-06
negative regulation of organelle organization	GO:0010639		7.741E-08	1.978E-05
positive regulation of NF-kappaB transcription factor activity	GO:0051092		1.203E-07	2.767E-05
interphase of mitotic cell cycle	GO:0051329		1.899E-07	3.97E-05

Zhou file

Name	Accession Number	Link	P-val	Corrected P-val
regulation of centrosome duplication	GO:0010824		2.101E-11	4.984E-08
regulation of centrosome cycle	GO:0046605		6.295E-11	7.469E-08
regulation of microtubule cytoskeleton organization	GO:0070507		6.368E-10	5.037E-07
regulation of microtubule-based process	GO:0032886		1.267E-09	7.518E-07
ribosome assembly	GO:0042255		5.675E-09	2.693E-06
centrosome cycle	GO:0007098		7.558E-09	2.989E-06
regulation of cyclin-dependent protein kinase activity	GO:0000079		1.501E-08	5.087E-06
microtubule organizing center organization	GO:0031023		3.651E-08	1.083E-05
cell aging	GO:0007569		4.376E-08	1.154E-05
negative regulation of organelle organization	GO:0010639		1.222E-07	2.9E-05
positive regulation of NF-kappaB transcription factor activity	GO:0051092		1.469E-07	3.168E-05