Study run-a2
Study informations
103 subnetworks in total page | file
306 genes associated page | file
Enriched GO terms page
General informations
General Index page
Study Index page
Subnetwork 1022-0-real
score
| Dataset | Score | P-val 1 | P-val 2 | P-val 3 |
|---|
| Desmedt | 0.1615 | 1.079e-02 | 8.164e-03 | 9.261e-02 |
|---|
| IPC-NIBC-129 | 0.2775 | 7.071e-02 | 1.001e-01 | 5.463e-01 |
|---|
| Ivshina_GPL96-GPL97 | 0.2462 | 1.743e-02 | 2.763e-02 | 3.652e-01 |
|---|
| Loi_GPL570 | 0.1970 | 1.222e-01 | 1.356e-01 | 4.246e-01 |
|---|
| Loi_GPL96-GPL97 | 0.1827 | 0.000e+00 | 5.000e-06 | 0.000e+00 |
|---|
| Parker_GPL1390 | 0.2141 | 9.969e-02 | 1.197e-01 | 5.600e-01 |
|---|
| Parker_GPL887 | 0.0077 | 4.538e-01 | 4.729e-01 | 5.075e-01 |
|---|
| Pawitan_GPL96-GPL97 | 0.3865 | 9.895e-01 | 9.868e-01 | 1.000e+00 |
|---|
| Schmidt | 0.1943 | 3.335e-02 | 3.984e-02 | 3.264e-01 |
|---|
| Sotiriou | 0.3232 | 1.010e-02 | 7.731e-03 | 1.895e-01 |
|---|
| Van-De-Vijver | 0.2315 | 1.106e-03 | 1.591e-03 | 6.277e-02 |
|---|
| Zhang | 0.2395 | 9.520e-02 | 5.713e-02 | 2.105e-01 |
|---|
| Zhou | 0.4147 | 5.212e-02 | 3.991e-02 | 3.253e-01 |
|---|
Expression data for subnetwork 1022-0-real in each dataset
Desmedt |
IPC-NIBC-129 |
Ivshina_GPL96-GPL97 |
Loi_GPL570 |
Loi_GPL96-GPL97 |
Parker_GPL1390 |
Parker_GPL887 |
Pawitan_GPL96-GPL97 |
Schmidt |
Sotiriou |
Van-De-Vijver |
Zhang |
Zhou |
Subnetwork structure for each dataset
- Desmedt
Score for each gene in subnetwork 1022-0-real in each dataset
| Gene Symbol | Links | Frequency | Frequency Rank | Subnetwork score rank | Global rank |
Desmedt | IPC-NIBC-129 | Ivshina_GPL96-GPL97 | Loi_GPL570 | Loi_GPL96-GPL97 | Parker_GPL1390 | Parker_GPL887 | Pawitan_GPL96-GPL97 | Schmidt | Sotiriou | Van-De-Vijver | Zhang | Zhou |
|---|
| cdkn3 |   | 53 | 5 | 29 | 22 | 0.114 | 0.269 | 0.199 | 0.136 | 0.193 | 0.166 | -0.009 | 0.323 | 0.186 | 0.198 | 0.201 | 0.271 | 0.372 |
|---|
| cdkn1a | | 44 | 7 | 1 | 4 | 0.115 | -0.020 | 0.065 | 0.082 | 0.099 | 0.124 | 0.055 | 0.087 | 0.068 | 0.144 | undef | -0.201 | 0.069 |
|---|
| tle1 | | 47 | 6 | 1 | 3 | 0.062 | 0.235 | -0.032 | -0.177 | 0.033 | 0.085 | 0.339 | 0.068 | 0.126 | -0.027 | 0.170 | 0.068 | 0.025 |
|---|
| ccnb1 | | 42 | 8 | 56 | 39 | 0.082 | 0.246 | 0.212 | 0.224 | 0.256 | 0.099 | 0.126 | 0.351 | 0.129 | 0.249 | undef | 0.167 | 0.398 |
|---|
| cdk7 | | 1 | 116 | 289 | 290 | -0.102 | 0.121 | 0.116 | 0.126 | 0.170 | 0.008 | -0.135 | 0.090 | -0.085 | 0.182 | -0.095 | 0.021 | 0.168 |
|---|
| ccnd1 | | 92 | 2 | 18 | 12 | 0.127 | -0.183 | 0.062 | 0.190 | 0.157 | -0.002 | -0.190 | 0.105 | -0.107 | 0.174 | undef | 0.144 | 0.290 |
|---|
| stmn1 | | 4 | 50 | 173 | 157 | 0.047 | 0.304 | 0.149 | 0.091 | 0.131 | 0.200 | 0.070 | 0.275 | 0.232 | 0.130 | 0.194 | 0.130 | 0.348 |
|---|
| tsc1 | | 58 | 4 | 18 | 13 | 0.049 | 0.012 | -0.055 | 0.072 | 0.055 | -0.144 | -0.242 | -0.196 | 0.006 | 0.010 | 0.095 | -0.007 | 0.207 |
|---|
| cdc2 | | 96 | 1 | 1 | 1 | 0.073 | 0.247 | 0.206 | 0.172 | 0.247 | 0.153 | -0.131 | 0.282 | 0.226 | 0.221 | 0.162 | 0.297 | 0.336 |
|---|
GO Enrichment output for subnetwork 1022-0-real in each dataset
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 |  | 5.074E-10 | 1.167E-06 |
|---|
| interphase of mitotic cell cycle | GO:0051329 | | 7.398E-09 | 8.508E-06 |
|---|
| interphase | GO:0051325 | | 8.314E-09 | 6.374E-06 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 4.246E-08 | 2.441E-05 |
|---|
| G2/M transition of mitotic cell cycle | GO:0000086 | | 6.734E-07 | 3.098E-04 |
|---|
| negative regulation of protein ubiquitination | GO:0031397 | | 6.861E-06 | 2.63E-03 |
|---|
| positive regulation of Rho GTPase activity | GO:0032321 | | 6.861E-06 | 2.254E-03 |
|---|
| response to UV | GO:0009411 | | 7.588E-06 | 2.181E-03 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 1.439E-05 | 3.679E-03 |
|---|
| regulation of focal adhesion formation | GO:0051893 | | 1.439E-05 | 3.311E-03 |
|---|
| anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process | GO:0031145 | | 1.785E-05 | 3.733E-03 |
|---|
IPC-NIBC-129 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 1.013E-10 | 2.474E-07 |
|---|
| interphase of mitotic cell cycle | GO:0051329 | | 1.62E-09 | 1.979E-06 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 9.378E-09 | 7.637E-06 |
|---|
| G2/M transition of mitotic cell cycle | GO:0000086 | | 2.956E-07 | 1.805E-04 |
|---|
| negative regulation of protein ubiquitination | GO:0031397 | | 2.705E-06 | 1.321E-03 |
|---|
| response to UV | GO:0009411 | | 3.338E-06 | 1.359E-03 |
|---|
| activation of Ras GTPase activity | GO:0032856 | | 4.055E-06 | 1.415E-03 |
|---|
| anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process | GO:0031145 | | 6.348E-06 | 1.939E-03 |
|---|
| positive regulation of ubiquitin-protein ligase activity during mitotic cell cycle | GO:0051437 | | 6.635E-06 | 1.801E-03 |
|---|
| positive regulation of ubiquitin-protein ligase activity | GO:0051443 | | 7.545E-06 | 1.843E-03 |
|---|
| regulation of ubiquitin-protein ligase activity during mitotic cell cycle | GO:0051439 | | 7.545E-06 | 1.676E-03 |
|---|
Ivshina_GPL96-GPL97 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 1.706E-10 | 4.104E-07 |
|---|
| interphase of mitotic cell cycle | GO:0051329 | | 2.328E-09 | 2.801E-06 |
|---|
| interphase | GO:0051325 | | 2.726E-09 | 2.186E-06 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 1.434E-08 | 8.628E-06 |
|---|
| G2/M transition of mitotic cell cycle | GO:0000086 | | 4.089E-07 | 1.968E-04 |
|---|
| negative regulation of protein ubiquitination | GO:0031397 | | 3.37E-06 | 1.351E-03 |
|---|
| activation of Ras GTPase activity | GO:0032856 | | 3.37E-06 | 1.158E-03 |
|---|
| response to UV | GO:0009411 | | 4.121E-06 | 1.239E-03 |
|---|
| anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process | GO:0031145 | | 8.768E-06 | 2.344E-03 |
|---|
| positive regulation of ubiquitin-protein ligase activity during mitotic cell cycle | GO:0051437 | | 9.163E-06 | 2.205E-03 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 9.426E-06 | 2.062E-03 |
|---|
Loi_GPL570 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 1.013E-10 | 2.474E-07 |
|---|
| interphase of mitotic cell cycle | GO:0051329 | | 1.62E-09 | 1.979E-06 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 9.378E-09 | 7.637E-06 |
|---|
| G2/M transition of mitotic cell cycle | GO:0000086 | | 2.956E-07 | 1.805E-04 |
|---|
| negative regulation of protein ubiquitination | GO:0031397 | | 2.705E-06 | 1.321E-03 |
|---|
| response to UV | GO:0009411 | | 3.338E-06 | 1.359E-03 |
|---|
| activation of Ras GTPase activity | GO:0032856 | | 4.055E-06 | 1.415E-03 |
|---|
| anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process | GO:0031145 | | 6.348E-06 | 1.939E-03 |
|---|
| positive regulation of ubiquitin-protein ligase activity during mitotic cell cycle | GO:0051437 | | 6.635E-06 | 1.801E-03 |
|---|
| positive regulation of ubiquitin-protein ligase activity | GO:0051443 | | 7.545E-06 | 1.843E-03 |
|---|
| regulation of ubiquitin-protein ligase activity during mitotic cell cycle | GO:0051439 | | 7.545E-06 | 1.676E-03 |
|---|
Loi_GPL96-GPL97 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 1.706E-10 | 4.104E-07 |
|---|
| interphase of mitotic cell cycle | GO:0051329 | | 2.328E-09 | 2.801E-06 |
|---|
| interphase | GO:0051325 | | 2.726E-09 | 2.186E-06 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 1.434E-08 | 8.628E-06 |
|---|
| G2/M transition of mitotic cell cycle | GO:0000086 | | 4.089E-07 | 1.968E-04 |
|---|
| negative regulation of protein ubiquitination | GO:0031397 | | 3.37E-06 | 1.351E-03 |
|---|
| activation of Ras GTPase activity | GO:0032856 | | 3.37E-06 | 1.158E-03 |
|---|
| response to UV | GO:0009411 | | 4.121E-06 | 1.239E-03 |
|---|
| anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process | GO:0031145 | | 8.768E-06 | 2.344E-03 |
|---|
| positive regulation of ubiquitin-protein ligase activity during mitotic cell cycle | GO:0051437 | | 9.163E-06 | 2.205E-03 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 9.426E-06 | 2.062E-03 |
|---|
Parker_GPL1390 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 2.036E-11 | 7.271E-08 |
|---|
| interphase of mitotic cell cycle | GO:0051329 | | 2.608E-10 | 4.657E-07 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 5.767E-09 | 6.864E-06 |
|---|
| cyclin-dependent protein kinase holoenzyme complex | GO:0000307 | | 5.876E-09 | 5.246E-06 |
|---|
| cyclin-dependent protein kinase regulator activity | GO:0016538 | | 1.73E-08 | 1.236E-05 |
|---|
| G2/M transition of mitotic cell cycle | GO:0000086 | | 7.119E-08 | 4.237E-05 |
|---|
| response to UV | GO:0009411 | | 1.913E-06 | 9.76E-04 |
|---|
| negative regulation of protein ubiquitination | GO:0031397 | | 2.578E-06 | 1.151E-03 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 3.865E-06 | 1.534E-03 |
|---|
| protein kinase regulator activity | GO:0019887 | | 4.31E-06 | 1.539E-03 |
|---|
| regulation of phosphoprotein phosphatase activity | GO:0043666 | | 5.41E-06 | 1.756E-03 |
|---|
Parker_GPL887 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 1.533E-11 | 5.593E-08 |
|---|
| interphase of mitotic cell cycle | GO:0051329 | | 1.663E-10 | 3.034E-07 |
|---|
| interphase | GO:0051325 | | 1.884E-10 | 2.291E-07 |
|---|
| RNA polymerase II carboxy-terminal domain kinase activity | GO:0008353 | | 7.68E-10 | 7.004E-07 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 3.015E-09 | 2.199E-06 |
|---|
| cyclin-dependent protein kinase holoenzyme complex | GO:0000307 | | 4.298E-09 | 2.613E-06 |
|---|
| cyclin-dependent protein kinase regulator activity | GO:0016538 | | 2.79E-08 | 1.454E-05 |
|---|
| G2/M transition of mitotic cell cycle | GO:0000086 | | 4.29E-08 | 1.956E-05 |
|---|
| cyclin-dependent protein kinase activity | GO:0004693 | | 2.235E-07 | 9.058E-05 |
|---|
| response to UV | GO:0009411 | | 1.079E-06 | 3.938E-04 |
|---|
| positive regulation of cell-matrix adhesion | GO:0001954 | | 2.053E-06 | 6.809E-04 |
|---|
Pawitan_GPL96-GPL97 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 1.706E-10 | 4.104E-07 |
|---|
| interphase of mitotic cell cycle | GO:0051329 | | 2.328E-09 | 2.801E-06 |
|---|
| interphase | GO:0051325 | | 2.726E-09 | 2.186E-06 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 1.434E-08 | 8.628E-06 |
|---|
| G2/M transition of mitotic cell cycle | GO:0000086 | | 4.089E-07 | 1.968E-04 |
|---|
| negative regulation of protein ubiquitination | GO:0031397 | | 3.37E-06 | 1.351E-03 |
|---|
| activation of Ras GTPase activity | GO:0032856 | | 3.37E-06 | 1.158E-03 |
|---|
| response to UV | GO:0009411 | | 4.121E-06 | 1.239E-03 |
|---|
| anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process | GO:0031145 | | 8.768E-06 | 2.344E-03 |
|---|
| positive regulation of ubiquitin-protein ligase activity during mitotic cell cycle | GO:0051437 | | 9.163E-06 | 2.205E-03 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 9.426E-06 | 2.062E-03 |
|---|
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 5.074E-10 | 1.167E-06 |
|---|
| interphase of mitotic cell cycle | GO:0051329 | | 7.398E-09 | 8.508E-06 |
|---|
| interphase | GO:0051325 | | 8.314E-09 | 6.374E-06 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 4.246E-08 | 2.441E-05 |
|---|
| G2/M transition of mitotic cell cycle | GO:0000086 | | 6.734E-07 | 3.098E-04 |
|---|
| negative regulation of protein ubiquitination | GO:0031397 | | 6.861E-06 | 2.63E-03 |
|---|
| positive regulation of Rho GTPase activity | GO:0032321 | | 6.861E-06 | 2.254E-03 |
|---|
| response to UV | GO:0009411 | | 7.588E-06 | 2.181E-03 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 1.439E-05 | 3.679E-03 |
|---|
| regulation of focal adhesion formation | GO:0051893 | | 1.439E-05 | 3.311E-03 |
|---|
| anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process | GO:0031145 | | 1.785E-05 | 3.733E-03 |
|---|
Sotiriou file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 5.074E-10 | 1.167E-06 |
|---|
| interphase of mitotic cell cycle | GO:0051329 | | 7.398E-09 | 8.508E-06 |
|---|
| interphase | GO:0051325 | | 8.314E-09 | 6.374E-06 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 4.246E-08 | 2.441E-05 |
|---|
| G2/M transition of mitotic cell cycle | GO:0000086 | | 6.734E-07 | 3.098E-04 |
|---|
| negative regulation of protein ubiquitination | GO:0031397 | | 6.861E-06 | 2.63E-03 |
|---|
| positive regulation of Rho GTPase activity | GO:0032321 | | 6.861E-06 | 2.254E-03 |
|---|
| response to UV | GO:0009411 | | 7.588E-06 | 2.181E-03 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 1.439E-05 | 3.679E-03 |
|---|
| regulation of focal adhesion formation | GO:0051893 | | 1.439E-05 | 3.311E-03 |
|---|
| anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process | GO:0031145 | | 1.785E-05 | 3.733E-03 |
|---|
Van-De-Vijver file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of focal adhesion formation | GO:0051893 | | 6.331E-06 | 0.01166884 |
|---|
| regulation of Rho GTPase activity | GO:0032319 | | 6.331E-06 | 5.834E-03 |
|---|
| positive regulation of Ras GTPase activity | GO:0032320 | | 6.331E-06 | 3.89E-03 |
|---|
| positive regulation of GTPase activity | GO:0043547 | | 8.861E-06 | 4.083E-03 |
|---|
| cellular protein complex disassembly | GO:0043624 | | 8.861E-06 | 3.266E-03 |
|---|
| negative regulation of signal transduction | GO:0009968 | | 1.038E-05 | 3.188E-03 |
|---|
| regulation of stress fiber formation | GO:0051492 | | 1.181E-05 | 3.11E-03 |
|---|
| negative regulation of cell communication | GO:0010648 | | 1.275E-05 | 2.938E-03 |
|---|
| regulation of dephosphorylation | GO:0035303 | | 1.518E-05 | 3.109E-03 |
|---|
| regulation of actin filament bundle formation | GO:0032231 | | 1.518E-05 | 2.798E-03 |
|---|
| regulation of protein ubiquitination | GO:0031396 | | 1.897E-05 | 3.179E-03 |
|---|
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 5.074E-10 | 1.167E-06 |
|---|
| interphase of mitotic cell cycle | GO:0051329 | | 7.398E-09 | 8.508E-06 |
|---|
| interphase | GO:0051325 | | 8.314E-09 | 6.374E-06 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 4.246E-08 | 2.441E-05 |
|---|
| G2/M transition of mitotic cell cycle | GO:0000086 | | 6.734E-07 | 3.098E-04 |
|---|
| negative regulation of protein ubiquitination | GO:0031397 | | 6.861E-06 | 2.63E-03 |
|---|
| positive regulation of Rho GTPase activity | GO:0032321 | | 6.861E-06 | 2.254E-03 |
|---|
| response to UV | GO:0009411 | | 7.588E-06 | 2.181E-03 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 1.439E-05 | 3.679E-03 |
|---|
| regulation of focal adhesion formation | GO:0051893 | | 1.439E-05 | 3.311E-03 |
|---|
| anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process | GO:0031145 | | 1.785E-05 | 3.733E-03 |
|---|
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 3.259E-10 | 7.734E-07 |
|---|
| interphase of mitotic cell cycle | GO:0051329 | | 4.137E-09 | 4.908E-06 |
|---|
| interphase | GO:0051325 | | 4.643E-09 | 3.673E-06 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 2.794E-08 | 1.657E-05 |
|---|
| G2/M transition of mitotic cell cycle | GO:0000086 | | 4.579E-07 | 2.173E-04 |
|---|
| negative regulation of protein ubiquitination | GO:0031397 | | 5.303E-06 | 2.097E-03 |
|---|
| response to UV | GO:0009411 | | 5.517E-06 | 1.87E-03 |
|---|
| positive regulation of Rho GTPase activity | GO:0032321 | | 7.95E-06 | 2.358E-03 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 1.113E-05 | 2.934E-03 |
|---|
| negative regulation of cyclin-dependent protein kinase activity | GO:0045736 | | 1.483E-05 | 3.519E-03 |
|---|
| regulation of focal adhesion formation | GO:0051893 | | 1.483E-05 | 3.199E-03 |
|---|
