Study run-a1
Study informations
119 subnetworks in total page | file
406 genes associated page | file
Enriched GO terms page
General informations
General Index page
Study Index page
Subnetwork 90861-10-real
score
| Dataset | Score | P-val 1 | P-val 2 | P-val 3 |
|---|
| Desmedt | 0.2158 | 1.094e-02 | 1.308e-02 | 1.059e-01 |
|---|
| IPC-NIBC-129 | 0.2973 | 8.491e-02 | 1.112e-01 | 6.201e-01 |
|---|
| Ivshina_GPL96-GPL97 | 0.2439 | 1.237e-02 | 1.864e-02 | 2.983e-01 |
|---|
| Loi_GPL570 | 0.2330 | 3.203e-02 | 3.176e-02 | 1.817e-01 |
|---|
| Loi_GPL96-GPL97 | 0.1511 | 7.000e-06 | 5.000e-05 | 4.800e-05 |
|---|
| Parker_GPL1390 | 0.2194 | 7.872e-02 | 7.681e-02 | 4.803e-01 |
|---|
| Parker_GPL887 | 0.0465 | 8.539e-01 | 8.687e-01 | 9.028e-01 |
|---|
| Pawitan_GPL96-GPL97 | 0.3459 | 9.636e-02 | 7.006e-02 | 5.068e-01 |
|---|
| Schmidt | 0.2435 | 8.619e-03 | 1.239e-02 | 1.165e-01 |
|---|
| Sotiriou | 0.3242 | 2.087e-03 | 5.760e-04 | 5.467e-02 |
|---|
| Wang | 0.1681 | 1.276e-01 | 9.144e-02 | 4.272e-01 |
|---|
| Zhang | 0.2748 | 1.240e-01 | 8.475e-02 | 2.900e-01 |
|---|
| Zhou | 0.4237 | 7.011e-02 | 7.508e-02 | 4.234e-01 |
|---|
Expression data for subnetwork 90861-10-real in each dataset
Desmedt |
IPC-NIBC-129 |
Ivshina_GPL96-GPL97 |
Loi_GPL570 |
Loi_GPL96-GPL97 |
Parker_GPL1390 |
Parker_GPL887 |
Pawitan_GPL96-GPL97 |
Schmidt |
Sotiriou |
Wang |
Zhang |
Zhou |
Subnetwork structure for each dataset
- Desmedt
Score for each gene in subnetwork 90861-10-real in each dataset
| Gene Symbol | Links | Frequency | Frequency Rank | Subnetwork score rank | Global rank |
Desmedt | IPC-NIBC-129 | Ivshina_GPL96-GPL97 | Loi_GPL570 | Loi_GPL96-GPL97 | Parker_GPL1390 | Parker_GPL887 | Pawitan_GPL96-GPL97 | Schmidt | Sotiriou | Wang | Zhang | Zhou |
|---|
| cks1b |   | 2 | 104 | 262 | 250 | 0.095 | 0.222 | 0.107 | -0.008 | 0.107 | 0.077 | 0.114 | 0.277 | 0.185 | 0.132 | 0.060 | 0.128 | 0.260 |
|---|
| stmn2 | | 29 | 8 | 1 | 3 | 0.057 | 0.106 | 0.005 | 0.052 | 0.110 | 0.071 | -0.099 | 0.006 | 0.034 | 0.103 | 0.075 | 0.113 | -0.039 |
|---|
| cdkn1a | | 70 | 3 | 73 | 51 | 0.115 | -0.020 | 0.065 | 0.082 | 0.099 | 0.124 | 0.055 | 0.087 | 0.068 | 0.144 | 0.015 | -0.201 | 0.069 |
|---|
| hn1l | | 1 | 164 | 262 | 267 | 0.092 | 0.090 | 0.092 | 0.136 | 0.066 | undef | 0.065 | 0.140 | 0.042 | 0.030 | 0.085 | 0.054 | 0.328 |
|---|
| notch1 | | 1 | 164 | 262 | 267 | 0.088 | 0.293 | -0.017 | -0.179 | 0.066 | 0.172 | 0.176 | 0.061 | 0.087 | 0.030 | -0.047 | -0.062 | 0.218 |
|---|
| ccnb1 | | 36 | 7 | 78 | 59 | 0.082 | 0.246 | 0.212 | 0.224 | 0.256 | 0.099 | 0.126 | 0.351 | 0.129 | 0.249 | 0.152 | 0.167 | 0.398 |
|---|
| ccnd1 | | 102 | 2 | 1 | 2 | 0.127 | -0.183 | 0.062 | 0.190 | 0.157 | -0.002 | -0.190 | 0.105 | -0.107 | 0.174 | 0.106 | 0.144 | 0.290 |
|---|
| cks2 | | 44 | 6 | 73 | 54 | 0.050 | 0.233 | 0.170 | 0.103 | 0.186 | 0.172 | 0.093 | 0.167 | 0.263 | 0.151 | 0.145 | 0.284 | 0.383 |
|---|
| tsc1 | | 47 | 5 | 17 | 8 | 0.049 | 0.012 | -0.055 | 0.072 | 0.055 | -0.144 | -0.242 | -0.196 | 0.006 | 0.010 | 0.043 | -0.007 | 0.207 |
|---|
| cdc2 | | 103 | 1 | 1 | 1 | 0.073 | 0.247 | 0.206 | 0.172 | 0.247 | 0.153 | -0.131 | 0.282 | 0.226 | 0.221 | 0.067 | 0.297 | 0.336 |
|---|
| cdk2 | | 2 | 104 | 262 | 250 | 0.102 | 0.241 | 0.092 | 0.008 | 0.100 | 0.011 | 0.132 | 0.236 | 0.154 | 0.122 | 0.186 | 0.046 | 0.232 |
|---|
| sfn | | 50 | 4 | 29 | 17 | 0.077 | 0.137 | 0.111 | 0.172 | 0.112 | 0.119 | 0.141 | 0.219 | 0.100 | 0.147 | 0.025 | 0.079 | 0.181 |
|---|
| hoxc4 | | 1 | 164 | 262 | 267 | 0.029 | 0.008 | 0.018 | -0.017 | 0.052 | -0.155 | -0.247 | -0.149 | 0.044 | 0.031 | 0.163 | 0.228 | undef |
|---|
| xrcc6 | | 1 | 164 | 262 | 267 | -0.068 | 0.058 | 0.067 | 0.072 | 0.070 | 0.085 | 0.051 | 0.183 | 0.038 | -0.022 | -0.057 | 0.025 | 0.035 |
|---|
GO Enrichment output for subnetwork 90861-10-real in each dataset
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 |  | 5.881E-11 | 1.353E-07 |
|---|
| anterior/posterior pattern formation | GO:0009952 | | 1.386E-09 | 1.594E-06 |
|---|
| embryonic organ morphogenesis | GO:0048562 | | 1.044E-08 | 8.006E-06 |
|---|
| G2/M transition of mitotic cell cycle | GO:0000086 | | 1.609E-08 | 9.254E-06 |
|---|
| interphase of mitotic cell cycle | GO:0051329 | | 1.011E-07 | 4.652E-05 |
|---|
| interphase | GO:0051325 | | 1.136E-07 | 4.353E-05 |
|---|
| embryonic organ development | GO:0048568 | | 1.232E-07 | 4.049E-05 |
|---|
| cartilage development | GO:0051216 | | 5.553E-07 | 1.597E-04 |
|---|
| negative regulation of protein ubiquitination | GO:0031397 | | 1.802E-05 | 4.604E-03 |
|---|
| anagen | GO:0042640 | | 1.802E-05 | 4.144E-03 |
|---|
| traversing start control point of mitotic cell cycle | GO:0007089 | | 1.802E-05 | 3.767E-03 |
|---|
IPC-NIBC-129 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 5.986E-12 | 1.462E-08 |
|---|
| embryonic organ morphogenesis | GO:0048562 | | 1.373E-09 | 1.677E-06 |
|---|
| G2/M transition of mitotic cell cycle | GO:0000086 | | 4.465E-09 | 3.636E-06 |
|---|
| interphase of mitotic cell cycle | GO:0051329 | | 1.619E-08 | 9.89E-06 |
|---|
| embryonic organ development | GO:0048568 | | 2.066E-08 | 1.01E-05 |
|---|
| cartilage development | GO:0051216 | | 1.017E-07 | 4.143E-05 |
|---|
| embryonic skeletal system development | GO:0048706 | | 1.098E-07 | 3.833E-05 |
|---|
| negative regulation of protein ubiquitination | GO:0031397 | | 6.418E-06 | 1.96E-03 |
|---|
| anagen | GO:0042640 | | 6.418E-06 | 1.742E-03 |
|---|
| regulation of keratinocyte differentiation | GO:0045616 | | 6.418E-06 | 1.568E-03 |
|---|
| stem cell division | GO:0017145 | | 6.418E-06 | 1.425E-03 |
|---|
Ivshina_GPL96-GPL97 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 1.006E-11 | 2.42E-08 |
|---|
| embryonic organ morphogenesis | GO:0048562 | | 1.967E-09 | 2.366E-06 |
|---|
| G2/M transition of mitotic cell cycle | GO:0000086 | | 6.395E-09 | 5.129E-06 |
|---|
| interphase of mitotic cell cycle | GO:0051329 | | 2.145E-08 | 1.29E-05 |
|---|
| interphase | GO:0051325 | | 2.51E-08 | 1.208E-05 |
|---|
| embryonic organ development | GO:0048568 | | 2.958E-08 | 1.186E-05 |
|---|
| embryonic skeletal system development | GO:0048706 | | 1.243E-07 | 4.274E-05 |
|---|
| cartilage development | GO:0051216 | | 1.346E-07 | 4.049E-05 |
|---|
| negative regulation of protein ubiquitination | GO:0031397 | | 7.727E-06 | 2.066E-03 |
|---|
| anagen | GO:0042640 | | 7.727E-06 | 1.859E-03 |
|---|
| traversing start control point of mitotic cell cycle | GO:0007089 | | 7.727E-06 | 1.69E-03 |
|---|
Loi_GPL570 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 5.986E-12 | 1.462E-08 |
|---|
| embryonic organ morphogenesis | GO:0048562 | | 1.373E-09 | 1.677E-06 |
|---|
| G2/M transition of mitotic cell cycle | GO:0000086 | | 4.465E-09 | 3.636E-06 |
|---|
| interphase of mitotic cell cycle | GO:0051329 | | 1.619E-08 | 9.89E-06 |
|---|
| embryonic organ development | GO:0048568 | | 2.066E-08 | 1.01E-05 |
|---|
| cartilage development | GO:0051216 | | 1.017E-07 | 4.143E-05 |
|---|
| embryonic skeletal system development | GO:0048706 | | 1.098E-07 | 3.833E-05 |
|---|
| negative regulation of protein ubiquitination | GO:0031397 | | 6.418E-06 | 1.96E-03 |
|---|
| anagen | GO:0042640 | | 6.418E-06 | 1.742E-03 |
|---|
| regulation of keratinocyte differentiation | GO:0045616 | | 6.418E-06 | 1.568E-03 |
|---|
| stem cell division | GO:0017145 | | 6.418E-06 | 1.425E-03 |
|---|
Loi_GPL96-GPL97 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 1.006E-11 | 2.42E-08 |
|---|
| embryonic organ morphogenesis | GO:0048562 | | 1.967E-09 | 2.366E-06 |
|---|
| G2/M transition of mitotic cell cycle | GO:0000086 | | 6.395E-09 | 5.129E-06 |
|---|
| interphase of mitotic cell cycle | GO:0051329 | | 2.145E-08 | 1.29E-05 |
|---|
| interphase | GO:0051325 | | 2.51E-08 | 1.208E-05 |
|---|
| embryonic organ development | GO:0048568 | | 2.958E-08 | 1.186E-05 |
|---|
| embryonic skeletal system development | GO:0048706 | | 1.243E-07 | 4.274E-05 |
|---|
| cartilage development | GO:0051216 | | 1.346E-07 | 4.049E-05 |
|---|
| negative regulation of protein ubiquitination | GO:0031397 | | 7.727E-06 | 2.066E-03 |
|---|
| anagen | GO:0042640 | | 7.727E-06 | 1.859E-03 |
|---|
| traversing start control point of mitotic cell cycle | GO:0007089 | | 7.727E-06 | 1.69E-03 |
|---|
Parker_GPL1390 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| cyclin-dependent protein kinase regulator activity | GO:0016538 | | 6.313E-14 | 2.254E-10 |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 1.019E-12 | 1.819E-09 |
|---|
| protein kinase regulator activity | GO:0019887 | | 4.782E-12 | 5.692E-09 |
|---|
| kinase regulator activity | GO:0019207 | | 1.505E-11 | 1.344E-08 |
|---|
| cyclin-dependent protein kinase holoenzyme complex | GO:0000307 | | 1.762E-11 | 1.259E-08 |
|---|
| G2/M transition of mitotic cell cycle | GO:0000086 | | 5.968E-10 | 3.552E-07 |
|---|
| interphase of mitotic cell cycle | GO:0051329 | | 3.625E-09 | 1.849E-06 |
|---|
| protein serine/threonine kinase inhibitor activity | GO:0030291 | | 1.495E-07 | 6.673E-05 |
|---|
| protein kinase inhibitor activity | GO:0004860 | | 1.337E-06 | 5.304E-04 |
|---|
| kinase inhibitor activity | GO:0019210 | | 1.655E-06 | 5.911E-04 |
|---|
| induction of apoptosis by intracellular signals | GO:0008629 | | 5.001E-06 | 1.624E-03 |
|---|
Parker_GPL887 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| cyclin-dependent protein kinase regulator activity | GO:0016538 | | 3.127E-13 | 1.141E-09 |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 1.481E-12 | 2.702E-09 |
|---|
| protein kinase regulator activity | GO:0019887 | | 7.428E-12 | 9.032E-09 |
|---|
| kinase regulator activity | GO:0019207 | | 1.78E-11 | 1.623E-08 |
|---|
| cyclin-dependent protein kinase holoenzyme complex | GO:0000307 | | 1.864E-11 | 1.36E-08 |
|---|
| G2/M transition of mitotic cell cycle | GO:0000086 | | 4.829E-10 | 2.936E-07 |
|---|
| interphase of mitotic cell cycle | GO:0051329 | | 3.884E-09 | 2.024E-06 |
|---|
| interphase | GO:0051325 | | 4.398E-09 | 2.005E-06 |
|---|
| protein serine/threonine kinase inhibitor activity | GO:0030291 | | 2.316E-07 | 9.389E-05 |
|---|
| cyclin-dependent protein kinase activity | GO:0004693 | | 1.203E-06 | 4.39E-04 |
|---|
| protein kinase inhibitor activity | GO:0004860 | | 2.454E-06 | 8.138E-04 |
|---|
Pawitan_GPL96-GPL97 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 1.006E-11 | 2.42E-08 |
|---|
| embryonic organ morphogenesis | GO:0048562 | | 1.967E-09 | 2.366E-06 |
|---|
| G2/M transition of mitotic cell cycle | GO:0000086 | | 6.395E-09 | 5.129E-06 |
|---|
| interphase of mitotic cell cycle | GO:0051329 | | 2.145E-08 | 1.29E-05 |
|---|
| interphase | GO:0051325 | | 2.51E-08 | 1.208E-05 |
|---|
| embryonic organ development | GO:0048568 | | 2.958E-08 | 1.186E-05 |
|---|
| embryonic skeletal system development | GO:0048706 | | 1.243E-07 | 4.274E-05 |
|---|
| cartilage development | GO:0051216 | | 1.346E-07 | 4.049E-05 |
|---|
| negative regulation of protein ubiquitination | GO:0031397 | | 7.727E-06 | 2.066E-03 |
|---|
| anagen | GO:0042640 | | 7.727E-06 | 1.859E-03 |
|---|
| traversing start control point of mitotic cell cycle | GO:0007089 | | 7.727E-06 | 1.69E-03 |
|---|
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 5.881E-11 | 1.353E-07 |
|---|
| anterior/posterior pattern formation | GO:0009952 | | 1.386E-09 | 1.594E-06 |
|---|
| embryonic organ morphogenesis | GO:0048562 | | 1.044E-08 | 8.006E-06 |
|---|
| G2/M transition of mitotic cell cycle | GO:0000086 | | 1.609E-08 | 9.254E-06 |
|---|
| interphase of mitotic cell cycle | GO:0051329 | | 1.011E-07 | 4.652E-05 |
|---|
| interphase | GO:0051325 | | 1.136E-07 | 4.353E-05 |
|---|
| embryonic organ development | GO:0048568 | | 1.232E-07 | 4.049E-05 |
|---|
| cartilage development | GO:0051216 | | 5.553E-07 | 1.597E-04 |
|---|
| negative regulation of protein ubiquitination | GO:0031397 | | 1.802E-05 | 4.604E-03 |
|---|
| anagen | GO:0042640 | | 1.802E-05 | 4.144E-03 |
|---|
| traversing start control point of mitotic cell cycle | GO:0007089 | | 1.802E-05 | 3.767E-03 |
|---|
Sotiriou file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 5.881E-11 | 1.353E-07 |
|---|
| anterior/posterior pattern formation | GO:0009952 | | 1.386E-09 | 1.594E-06 |
|---|
| embryonic organ morphogenesis | GO:0048562 | | 1.044E-08 | 8.006E-06 |
|---|
| G2/M transition of mitotic cell cycle | GO:0000086 | | 1.609E-08 | 9.254E-06 |
|---|
| interphase of mitotic cell cycle | GO:0051329 | | 1.011E-07 | 4.652E-05 |
|---|
| interphase | GO:0051325 | | 1.136E-07 | 4.353E-05 |
|---|
| embryonic organ development | GO:0048568 | | 1.232E-07 | 4.049E-05 |
|---|
| cartilage development | GO:0051216 | | 5.553E-07 | 1.597E-04 |
|---|
| negative regulation of protein ubiquitination | GO:0031397 | | 1.802E-05 | 4.604E-03 |
|---|
| anagen | GO:0042640 | | 1.802E-05 | 4.144E-03 |
|---|
| traversing start control point of mitotic cell cycle | GO:0007089 | | 1.802E-05 | 3.767E-03 |
|---|
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 5.881E-11 | 1.353E-07 |
|---|
| anterior/posterior pattern formation | GO:0009952 | | 1.386E-09 | 1.594E-06 |
|---|
| embryonic organ morphogenesis | GO:0048562 | | 1.044E-08 | 8.006E-06 |
|---|
| G2/M transition of mitotic cell cycle | GO:0000086 | | 1.609E-08 | 9.254E-06 |
|---|
| interphase of mitotic cell cycle | GO:0051329 | | 1.011E-07 | 4.652E-05 |
|---|
| interphase | GO:0051325 | | 1.136E-07 | 4.353E-05 |
|---|
| embryonic organ development | GO:0048568 | | 1.232E-07 | 4.049E-05 |
|---|
| cartilage development | GO:0051216 | | 5.553E-07 | 1.597E-04 |
|---|
| negative regulation of protein ubiquitination | GO:0031397 | | 1.802E-05 | 4.604E-03 |
|---|
| anagen | GO:0042640 | | 1.802E-05 | 4.144E-03 |
|---|
| traversing start control point of mitotic cell cycle | GO:0007089 | | 1.802E-05 | 3.767E-03 |
|---|
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 5.881E-11 | 1.353E-07 |
|---|
| anterior/posterior pattern formation | GO:0009952 | | 1.386E-09 | 1.594E-06 |
|---|
| embryonic organ morphogenesis | GO:0048562 | | 1.044E-08 | 8.006E-06 |
|---|
| G2/M transition of mitotic cell cycle | GO:0000086 | | 1.609E-08 | 9.254E-06 |
|---|
| interphase of mitotic cell cycle | GO:0051329 | | 1.011E-07 | 4.652E-05 |
|---|
| interphase | GO:0051325 | | 1.136E-07 | 4.353E-05 |
|---|
| embryonic organ development | GO:0048568 | | 1.232E-07 | 4.049E-05 |
|---|
| cartilage development | GO:0051216 | | 5.553E-07 | 1.597E-04 |
|---|
| negative regulation of protein ubiquitination | GO:0031397 | | 1.802E-05 | 4.604E-03 |
|---|
| anagen | GO:0042640 | | 1.802E-05 | 4.144E-03 |
|---|
| traversing start control point of mitotic cell cycle | GO:0007089 | | 1.802E-05 | 3.767E-03 |
|---|
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 3.469E-11 | 8.232E-08 |
|---|
| G2/M transition of mitotic cell cycle | GO:0000086 | | 9.626E-09 | 1.142E-05 |
|---|
| interphase of mitotic cell cycle | GO:0051329 | | 5.677E-08 | 4.49E-05 |
|---|
| interphase | GO:0051325 | | 6.367E-08 | 3.777E-05 |
|---|
| negative regulation of protein ubiquitination | GO:0031397 | | 1.393E-05 | 6.609E-03 |
|---|
| anagen | GO:0042640 | | 1.393E-05 | 5.508E-03 |
|---|
| traversing start control point of mitotic cell cycle | GO:0007089 | | 1.393E-05 | 4.721E-03 |
|---|
| negative regulation of myoblast differentiation | GO:0045662 | | 1.393E-05 | 4.131E-03 |
|---|
| regulation of keratinocyte differentiation | GO:0045616 | | 1.393E-05 | 3.672E-03 |
|---|
| ectodermal gut morphogenesis | GO:0048567 | | 1.393E-05 | 3.305E-03 |
|---|
| induction of apoptosis by intracellular signals | GO:0008629 | | 1.719E-05 | 3.708E-03 |
|---|
