Study run-a1

Study informations

119 subnetworks in total page | file

406 genes associated page | file

Enriched GO terms page

General informations

General Index page

Study Index page

Subnetwork 6628-8-real

score

Dataset	Score	P-val 1	P-val 2	P-val 3
Desmedt	0.2291	7.709e-03	9.197e-03	8.141e-02
IPC-NIBC-129	0.2484	4.442e-02	5.612e-02	4.177e-01
Ivshina_GPL96-GPL97	0.2609	7.351e-03	1.167e-02	2.182e-01
Loi_GPL570	0.2574	6.286e-02	6.243e-02	3.009e-01
Loi_GPL96-GPL97	0.1638	2.300e-05	1.360e-04	2.670e-04
Parker_GPL1390	0.2669	6.534e-02	6.265e-02	4.359e-01
Parker_GPL887	0.0227	9.423e-01	9.489e-01	9.710e-01
Pawitan_GPL96-GPL97	0.3682	9.471e-01	9.492e-01	1.000e+00
Schmidt	0.2272	1.286e-02	1.817e-02	1.584e-01
Sotiriou	0.2998	4.626e-03	1.572e-03	9.644e-02
Wang	0.1651	1.042e-01	7.215e-02	3.754e-01
Zhang	0.0171	1.294e-01	8.919e-02	3.009e-01
Zhou	0.3757	5.672e-02	5.955e-02	3.546e-01

Expression data for subnetwork 6628-8-real in each dataset

Desmedt | IPC-NIBC-129 | Ivshina_GPL96-GPL97 | Loi_GPL570 | Loi_GPL96-GPL97 | Parker_GPL1390 | Parker_GPL887 | Pawitan_GPL96-GPL97 | Schmidt | Sotiriou | Wang | Zhang | Zhou |

Subnetwork structure for each dataset

Desmedt IPC-NIBC-129 Ivshina_GPL96-GPL97 Loi_GPL570 Loi_GPL96-GPL97 Parker_GPL1390 Parker_GPL887 Pawitan_GPL96-GPL97 Schmidt Sotiriou Wang Zhang Zhou

Desmedt

Score for each gene in subnetwork 6628-8-real in each dataset

Gene Symbol	Links	Frequency	Frequency Rank	Subnetwork score rank	Global rank	Desmedt	IPC-NIBC-129	Ivshina_GPL96-GPL97	Loi_GPL570	Loi_GPL96-GPL97	Parker_GPL1390	Parker_GPL887	Pawitan_GPL96-GPL97	Schmidt	Sotiriou	Wang	Zhang	Zhou
hspb1		19	11	17	11	0.190	-0.050	0.184	0.212	0.231	-0.026	-0.065	0.289	-0.021	0.201	0.125	-0.077	0.290
snrpb		1	164	401	401	0.141	0.077	0.167	0.250	0.139	0.089	0.155	0.281	0.120	0.161	0.045	0.010	0.153
sf3b3		7	38	1	5	0.119	0.241	0.143	-0.019	0.082	0.222	0.007	0.271	0.168	0.060	0.017	-0.077	0.372
rrm2		21	10	44	26	0.131	0.207	0.227	0.187	0.161	0.178	0.137	0.303	0.190	0.219	0.117	0.129	0.302
snrpd1		2	104	337	327	-0.026	0.257	0.128	0.254	0.106	0.174	0.255	0.155	0.190	0.111	0.076	0.011	0.205
luc7l3		7	38	1	5	0.006	0.111	-0.046	-0.016	0.121	0.071	-0.318	-0.084	0.159	0.098	0.155	0.067	0.065
eif4g1		5	50	153	142	0.123	0.262	0.043	0.013	0.098	0.189	0.016	0.194	0.076	0.147	-0.154	-0.028	0.268

GO Enrichment output for subnetwork 6628-8-real in each dataset

Desmedt file

Name	Accession Number	Link	P-val	Corrected P-val
deoxyribonucleotide biosynthetic process	GO:0009263		4.936E-09	1.135E-05
nucleoside diphosphate metabolic process	GO:0009132		8.635E-09	9.93E-06
deoxyribonucleotide metabolic process	GO:0009262		3.264E-07	2.502E-04
spliceosomal snRNP biogenesis	GO:0000387		3.778E-07	2.172E-04
regulation of translational initiation	GO:0006446		3.45E-06	1.587E-03
protein oligomerization	GO:0051259		1.054E-05	4.04E-03
regulation of translation	GO:0006417		3.849E-05	0.01264526
spliceosome assembly	GO:0000245		1.859E-04	0.05344478
response to heat	GO:0009408		1.859E-04	0.04750647
ribonucleoprotein complex assembly	GO:0022618		4.021E-04	0.09248648
response to temperature stimulus	GO:0009266		4.787E-04	0.10010159

IPC-NIBC-129 file

Name	Accession Number	Link	P-val	Corrected P-val
spliceosomal snRNP biogenesis	GO:0000387		1.245E-07	3.043E-04
regulation of translational initiation	GO:0006446		9.378E-07	1.145E-03
deoxyribonucleotide biosynthetic process	GO:0009263		2.59E-06	2.109E-03
nucleoside diphosphate metabolic process	GO:0009132		4.439E-06	2.711E-03
deoxyribonucleotide metabolic process	GO:0009262		3.111E-05	0.01519835
response to heat	GO:0009408		5.708E-05	0.02323971
spliceosome assembly	GO:0000245		6.882E-05	0.02401734
response to temperature stimulus	GO:0009266		1.559E-04	0.04759454
ribonucleoprotein complex assembly	GO:0022618		1.621E-04	0.04398944
protein oligomerization	GO:0051259		3.745E-04	0.09147873
response to unfolded protein	GO:0006986		4.856E-04	0.10785813

Ivshina_GPL96-GPL97 file

Name	Accession Number	Link	P-val	Corrected P-val
deoxyribonucleotide biosynthetic process	GO:0009263		2.795E-09	6.726E-06
nucleoside diphosphate metabolic process	GO:0009132		6.705E-09	8.067E-06
deoxyribonucleotide metabolic process	GO:0009262		1.225E-07	9.824E-05
spliceosomal snRNP biogenesis	GO:0000387		2.323E-07	1.398E-04
regulation of translational initiation	GO:0006446		1.848E-06	8.891E-04
protein oligomerization	GO:0051259		5.959E-06	2.39E-03
response to heat	GO:0009408		8.664E-05	0.0297796
spliceosome assembly	GO:0000245		9.874E-05	0.02969536
response to temperature stimulus	GO:0009266		2.33E-04	0.06230183
ribonucleoprotein complex assembly	GO:0022618		2.33E-04	0.05607164
response to unfolded protein	GO:0006986		7.007E-04	0.15327097

Loi_GPL570 file

Name	Accession Number	Link	P-val	Corrected P-val
spliceosomal snRNP biogenesis	GO:0000387		1.245E-07	3.043E-04
regulation of translational initiation	GO:0006446		9.378E-07	1.145E-03
deoxyribonucleotide biosynthetic process	GO:0009263		2.59E-06	2.109E-03
nucleoside diphosphate metabolic process	GO:0009132		4.439E-06	2.711E-03
deoxyribonucleotide metabolic process	GO:0009262		3.111E-05	0.01519835
response to heat	GO:0009408		5.708E-05	0.02323971
spliceosome assembly	GO:0000245		6.882E-05	0.02401734
response to temperature stimulus	GO:0009266		1.559E-04	0.04759454
ribonucleoprotein complex assembly	GO:0022618		1.621E-04	0.04398944
protein oligomerization	GO:0051259		3.745E-04	0.09147873
response to unfolded protein	GO:0006986		4.856E-04	0.10785813

Loi_GPL96-GPL97 file

Name	Accession Number	Link	P-val	Corrected P-val
deoxyribonucleotide biosynthetic process	GO:0009263		2.795E-09	6.726E-06
nucleoside diphosphate metabolic process	GO:0009132		6.705E-09	8.067E-06
deoxyribonucleotide metabolic process	GO:0009262		1.225E-07	9.824E-05
spliceosomal snRNP biogenesis	GO:0000387		2.323E-07	1.398E-04
regulation of translational initiation	GO:0006446		1.848E-06	8.891E-04
protein oligomerization	GO:0051259		5.959E-06	2.39E-03
response to heat	GO:0009408		8.664E-05	0.0297796
spliceosome assembly	GO:0000245		9.874E-05	0.02969536
response to temperature stimulus	GO:0009266		2.33E-04	0.06230183
ribonucleoprotein complex assembly	GO:0022618		2.33E-04	0.05607164
response to unfolded protein	GO:0006986		7.007E-04	0.15327097

Parker_GPL1390 file

Name	Accession Number	Link	P-val	Corrected P-val
small nuclear ribonucleoprotein complex	GO:0030532		2.248E-10	8.027E-07
spliceosomal snRNP biogenesis	GO:0000387		2.387E-07	4.262E-04
regulation of translational initiation	GO:0006446		6.946E-07	8.268E-04
oxidoreductase activity. acting on CH or CH2 groups	GO:0016725		4.058E-06	3.623E-03
deoxyribonucleotide biosynthetic process	GO:0009263		4.058E-06	2.899E-03
nucleoside diphosphate metabolic process	GO:0009132		6.954E-06	4.139E-03
eukaryotic translation initiation factor 4F complex	GO:0016281		1.756E-05	8.958E-03
small nucleolar ribonucleoprotein complex	GO:0005732		2.622E-05	0.01170582
deoxyribonucleotide metabolic process	GO:0009262		2.95E-05	0.01170317
RNA splicing factor activity. transesterification mechanism	GO:0031202		5.314E-05	0.01897465
response to heat	GO:0009408		6.254E-05	0.02030293

Parker_GPL887 file

Name	Accession Number	Link	P-val	Corrected P-val
small nuclear ribonucleoprotein complex	GO:0030532		1.449E-10	5.286E-07
spliceosomal snRNP biogenesis	GO:0000387		1.491E-07	2.72E-04
regulation of translational initiation	GO:0006446		4.291E-07	5.218E-04
deoxyribonucleotide biosynthetic process	GO:0009263		2.395E-06	2.184E-03
oxidoreductase activity. acting on CH or CH2 groups	GO:0016725		3.352E-06	2.446E-03
nucleoside diphosphate metabolic process	GO:0009132		4.469E-06	2.717E-03
eukaryotic translation initiation factor 4F complex	GO:0016281		4.469E-06	2.329E-03
deoxyribonucleotide metabolic process	GO:0009262		2.723E-05	0.01241602
RNA splicing factor activity. transesterification mechanism	GO:0031202		4.39E-05	0.01779421
response to heat	GO:0009408		6.007E-05	0.02191455
spliceosome assembly	GO:0000245		6.91E-05	0.02291667

Pawitan_GPL96-GPL97 file

Name	Accession Number	Link	P-val	Corrected P-val
deoxyribonucleotide biosynthetic process	GO:0009263		2.795E-09	6.726E-06
nucleoside diphosphate metabolic process	GO:0009132		6.705E-09	8.067E-06
deoxyribonucleotide metabolic process	GO:0009262		1.225E-07	9.824E-05
spliceosomal snRNP biogenesis	GO:0000387		2.323E-07	1.398E-04
regulation of translational initiation	GO:0006446		1.848E-06	8.891E-04
protein oligomerization	GO:0051259		5.959E-06	2.39E-03
response to heat	GO:0009408		8.664E-05	0.0297796
spliceosome assembly	GO:0000245		9.874E-05	0.02969536
response to temperature stimulus	GO:0009266		2.33E-04	0.06230183
ribonucleoprotein complex assembly	GO:0022618		2.33E-04	0.05607164
response to unfolded protein	GO:0006986		7.007E-04	0.15327097

Schmidt file

Name	Accession Number	Link	P-val	Corrected P-val
deoxyribonucleotide biosynthetic process	GO:0009263		4.936E-09	1.135E-05
nucleoside diphosphate metabolic process	GO:0009132		8.635E-09	9.93E-06
deoxyribonucleotide metabolic process	GO:0009262		3.264E-07	2.502E-04
spliceosomal snRNP biogenesis	GO:0000387		3.778E-07	2.172E-04
regulation of translational initiation	GO:0006446		3.45E-06	1.587E-03
protein oligomerization	GO:0051259		1.054E-05	4.04E-03
regulation of translation	GO:0006417		3.849E-05	0.01264526
spliceosome assembly	GO:0000245		1.859E-04	0.05344478
response to heat	GO:0009408		1.859E-04	0.04750647
ribonucleoprotein complex assembly	GO:0022618		4.021E-04	0.09248648
response to temperature stimulus	GO:0009266		4.787E-04	0.10010159

Sotiriou file

Name	Accession Number	Link	P-val	Corrected P-val
deoxyribonucleotide biosynthetic process	GO:0009263		4.936E-09	1.135E-05
nucleoside diphosphate metabolic process	GO:0009132		8.635E-09	9.93E-06
deoxyribonucleotide metabolic process	GO:0009262		3.264E-07	2.502E-04
spliceosomal snRNP biogenesis	GO:0000387		3.778E-07	2.172E-04
regulation of translational initiation	GO:0006446		3.45E-06	1.587E-03
protein oligomerization	GO:0051259		1.054E-05	4.04E-03
regulation of translation	GO:0006417		3.849E-05	0.01264526
spliceosome assembly	GO:0000245		1.859E-04	0.05344478
response to heat	GO:0009408		1.859E-04	0.04750647
ribonucleoprotein complex assembly	GO:0022618		4.021E-04	0.09248648
response to temperature stimulus	GO:0009266		4.787E-04	0.10010159

Wang file

Name	Accession Number	Link	P-val	Corrected P-val
deoxyribonucleotide biosynthetic process	GO:0009263		4.936E-09	1.135E-05
nucleoside diphosphate metabolic process	GO:0009132		8.635E-09	9.93E-06
deoxyribonucleotide metabolic process	GO:0009262		3.264E-07	2.502E-04
spliceosomal snRNP biogenesis	GO:0000387		3.778E-07	2.172E-04
regulation of translational initiation	GO:0006446		3.45E-06	1.587E-03
protein oligomerization	GO:0051259		1.054E-05	4.04E-03
regulation of translation	GO:0006417		3.849E-05	0.01264526
spliceosome assembly	GO:0000245		1.859E-04	0.05344478
response to heat	GO:0009408		1.859E-04	0.04750647
ribonucleoprotein complex assembly	GO:0022618		4.021E-04	0.09248648
response to temperature stimulus	GO:0009266		4.787E-04	0.10010159

Zhang file

Name	Accession Number	Link	P-val	Corrected P-val
deoxyribonucleotide biosynthetic process	GO:0009263		4.936E-09	1.135E-05
nucleoside diphosphate metabolic process	GO:0009132		8.635E-09	9.93E-06
deoxyribonucleotide metabolic process	GO:0009262		3.264E-07	2.502E-04
spliceosomal snRNP biogenesis	GO:0000387		3.778E-07	2.172E-04
regulation of translational initiation	GO:0006446		3.45E-06	1.587E-03
protein oligomerization	GO:0051259		1.054E-05	4.04E-03
regulation of translation	GO:0006417		3.849E-05	0.01264526
spliceosome assembly	GO:0000245		1.859E-04	0.05344478
response to heat	GO:0009408		1.859E-04	0.04750647
ribonucleoprotein complex assembly	GO:0022618		4.021E-04	0.09248648
response to temperature stimulus	GO:0009266		4.787E-04	0.10010159

Zhou file

Name	Accession Number	Link	P-val	Corrected P-val
spliceosomal snRNP biogenesis	GO:0000387		1.91E-09	4.531E-06
deoxyribonucleotide biosynthetic process	GO:0009263		7.625E-09	9.047E-06
nucleoside diphosphate metabolic process	GO:0009132		1.219E-08	9.646E-06
deoxyribonucleotide metabolic process	GO:0009262		3.336E-07	1.979E-04
regulation of translational initiation	GO:0006446		3.259E-06	1.547E-03
protein oligomerization	GO:0051259		9.749E-06	3.856E-03
response to heat	GO:0009408		1.698E-04	0.05756633
spliceosome assembly	GO:0000245		2.454E-04	0.07278921
response to temperature stimulus	GO:0009266		4.559E-04	0.12019865
ribonucleoprotein complex assembly	GO:0022618		5.537E-04	0.13139349
response to unfolded protein	GO:0006986		1.211E-03	0.26125594