Study run-a1
Study informations
119 subnetworks in total page | file
406 genes associated page | file
Enriched GO terms page
General informations
General Index page
Study Index page
Subnetwork 55775-6-real
score
| Dataset | Score | P-val 1 | P-val 2 | P-val 3 |
|---|
| Desmedt | 0.2484 | 4.863e-03 | 5.778e-03 | 5.707e-02 |
|---|
| IPC-NIBC-129 | 0.2579 | 7.659e-02 | 9.982e-02 | 5.865e-01 |
|---|
| Ivshina_GPL96-GPL97 | 0.2831 | 2.131e-03 | 3.834e-03 | 9.493e-02 |
|---|
| Loi_GPL570 | 0.3148 | 5.515e-02 | 5.475e-02 | 2.738e-01 |
|---|
| Loi_GPL96-GPL97 | 0.1565 | 1.050e-04 | 5.180e-04 | 2.297e-03 |
|---|
| Parker_GPL1390 | 0.2270 | 4.963e-02 | 4.633e-02 | 3.753e-01 |
|---|
| Parker_GPL887 | 0.0129 | 9.735e-01 | 9.767e-01 | 9.895e-01 |
|---|
| Pawitan_GPL96-GPL97 | 0.3420 | 3.170e-01 | 2.776e-01 | 8.795e-01 |
|---|
| Schmidt | 0.2050 | 6.971e-03 | 1.011e-02 | 9.844e-02 |
|---|
| Sotiriou | 0.3371 | 2.176e-03 | 6.070e-04 | 5.635e-02 |
|---|
| Wang | 0.1883 | 1.171e-01 | 8.272e-02 | 4.047e-01 |
|---|
| Zhang | 0.1548 | 9.295e-02 | 6.001e-02 | 2.252e-01 |
|---|
| Zhou | 0.4212 | 7.274e-02 | 7.816e-02 | 4.360e-01 |
|---|
Expression data for subnetwork 55775-6-real in each dataset
Desmedt |
IPC-NIBC-129 |
Ivshina_GPL96-GPL97 |
Loi_GPL570 |
Loi_GPL96-GPL97 |
Parker_GPL1390 |
Parker_GPL887 |
Pawitan_GPL96-GPL97 |
Schmidt |
Sotiriou |
Wang |
Zhang |
Zhou |
Subnetwork structure for each dataset
- Desmedt
Score for each gene in subnetwork 55775-6-real in each dataset
| Gene Symbol | Links | Frequency | Frequency Rank | Subnetwork score rank | Global rank |
Desmedt | IPC-NIBC-129 | Ivshina_GPL96-GPL97 | Loi_GPL570 | Loi_GPL96-GPL97 | Parker_GPL1390 | Parker_GPL887 | Pawitan_GPL96-GPL97 | Schmidt | Sotiriou | Wang | Zhang | Zhou |
|---|
| ncl |   | 1 | 164 | 325 | 329 | -0.076 | 0.184 | 0.042 | 0.136 | 0.064 | 0.160 | 0.235 | 0.069 | 0.204 | 0.011 | -0.130 | -0.142 | 0.303 |
|---|
| cdkn1a | | 70 | 3 | 73 | 51 | 0.115 | -0.020 | 0.065 | 0.082 | 0.099 | 0.124 | 0.055 | 0.087 | 0.068 | 0.144 | 0.015 | -0.201 | 0.069 |
|---|
| pttg1 | | 10 | 25 | 31 | 21 | 0.072 | 0.270 | 0.175 | 0.183 | 0.200 | 0.208 | 0.347 | 0.334 | 0.224 | 0.204 | 0.147 | 0.210 | 0.309 |
|---|
| top1 | | 1 | 164 | 325 | 329 | 0.038 | 0.073 | 0.107 | 0.079 | 0.120 | -0.036 | 0.043 | 0.051 | 0.134 | 0.108 | -0.086 | 0.000 | 0.280 |
|---|
| krt18 | | 15 | 15 | 230 | 195 | 0.112 | -0.078 | 0.147 | 0.150 | 0.161 | -0.086 | -0.204 | 0.083 | -0.099 | 0.118 | 0.086 | -0.114 | 0.222 |
|---|
| tdp1 | | 1 | 164 | 325 | 329 | 0.072 | 0.099 | 0.101 | 0.012 | 0.068 | 0.089 | 0.152 | 0.281 | 0.066 | 0.080 | 0.082 | 0.053 | 0.238 |
|---|
| hsp90aa1 | | 11 | 21 | 234 | 204 | 0.116 | 0.030 | 0.164 | 0.076 | 0.119 | 0.155 | -0.199 | 0.169 | 0.069 | 0.102 | 0.052 | -0.011 | 0.399 |
|---|
| ccnd1 | | 102 | 2 | 1 | 2 | 0.127 | -0.183 | 0.062 | 0.190 | 0.157 | -0.002 | -0.190 | 0.105 | -0.107 | 0.174 | 0.106 | 0.144 | 0.290 |
|---|
| ndrg1 | | 9 | 27 | 250 | 223 | 0.072 | 0.301 | 0.084 | 0.324 | 0.108 | 0.102 | 0.240 | 0.083 | 0.068 | 0.064 | 0.128 | 0.092 | -0.255 |
|---|
| tsc1 | | 47 | 5 | 17 | 8 | 0.049 | 0.012 | -0.055 | 0.072 | 0.055 | -0.144 | -0.242 | -0.196 | 0.006 | 0.010 | 0.043 | -0.007 | 0.207 |
|---|
| pkd1 | | 9 | 27 | 234 | 205 | -0.021 | 0.055 | 0.007 | 0.037 | 0.071 | 0.184 | 0.256 | -0.217 | -0.068 | -0.001 | 0.046 | 0.077 | 0.151 |
|---|
| cdc2 | | 103 | 1 | 1 | 1 | 0.073 | 0.247 | 0.206 | 0.172 | 0.247 | 0.153 | -0.131 | 0.282 | 0.226 | 0.221 | 0.067 | 0.297 | 0.336 |
|---|
| birc5 | | 14 | 17 | 162 | 140 | 0.101 | 0.216 | 0.190 | 0.134 | 0.223 | 0.149 | 0.166 | 0.202 | 0.236 | 0.241 | 0.124 | 0.205 | 0.400 |
|---|
| fn1 | | 3 | 79 | 234 | 222 | 0.156 | 0.240 | -0.023 | -0.035 | 0.017 | 0.089 | -0.120 | 0.077 | -0.045 | -0.063 | 0.109 | 0.067 | 0.230 |
|---|
GO Enrichment output for subnetwork 55775-6-real in each dataset
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| DNA topological change | GO:0006265 |  | 6.55E-08 | 1.507E-04 |
|---|
| DNA unwinding during replication | GO:0006268 | | 1.182E-06 | 1.36E-03 |
|---|
| DNA duplex unwinding | GO:0032508 | | 2.202E-06 | 1.688E-03 |
|---|
| G2/M transition of mitotic cell cycle | GO:0000086 | | 4.289E-06 | 2.466E-03 |
|---|
| interphase of mitotic cell cycle | GO:0051329 | | 8.787E-06 | 4.042E-03 |
|---|
| interphase | GO:0051325 | | 9.628E-06 | 3.691E-03 |
|---|
| negative regulation of protein ubiquitination | GO:0031397 | | 2.291E-05 | 7.526E-03 |
|---|
| positive regulation of Rho GTPase activity | GO:0032321 | | 2.291E-05 | 6.585E-03 |
|---|
| protein refolding | GO:0042026 | | 3.433E-05 | 8.772E-03 |
|---|
| spindle checkpoint | GO:0031577 | | 3.433E-05 | 7.895E-03 |
|---|
| establishment of chromosome localization | GO:0051303 | | 3.433E-05 | 7.177E-03 |
|---|
IPC-NIBC-129 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| embryonic cleavage | GO:0040016 | | 3.934E-12 | 9.612E-09 |
|---|
| DNA topological change | GO:0006265 | | 5.497E-11 | 6.714E-08 |
|---|
| DNA unwinding during replication | GO:0006268 | | 1.857E-09 | 1.512E-06 |
|---|
| DNA duplex unwinding | GO:0032508 | | 3.773E-09 | 2.304E-06 |
|---|
| DNA-dependent DNA replication | GO:0006261 | | 2.062E-07 | 1.007E-04 |
|---|
| response to drug | GO:0042493 | | 1.369E-06 | 5.576E-04 |
|---|
| G2/M transition of mitotic cell cycle | GO:0000086 | | 1.982E-06 | 6.917E-04 |
|---|
| interphase of mitotic cell cycle | GO:0051329 | | 2.664E-06 | 8.135E-04 |
|---|
| negative regulation of protein ubiquitination | GO:0031397 | | 9.402E-06 | 2.552E-03 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 1.29E-05 | 3.151E-03 |
|---|
| protein refolding | GO:0042026 | | 1.409E-05 | 3.13E-03 |
|---|
Ivshina_GPL96-GPL97 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| embryonic cleavage | GO:0040016 | | 5.965E-12 | 1.435E-08 |
|---|
| DNA topological change | GO:0006265 | | 8.332E-11 | 1.002E-07 |
|---|
| DNA unwinding during replication | GO:0006268 | | 2.813E-09 | 2.256E-06 |
|---|
| DNA duplex unwinding | GO:0032508 | | 5.714E-09 | 3.437E-06 |
|---|
| DNA-dependent DNA replication | GO:0006261 | | 2.443E-07 | 1.176E-04 |
|---|
| response to drug | GO:0042493 | | 1.966E-06 | 7.886E-04 |
|---|
| G2/M transition of mitotic cell cycle | GO:0000086 | | 2.712E-06 | 9.32E-04 |
|---|
| interphase of mitotic cell cycle | GO:0051329 | | 3.544E-06 | 1.066E-03 |
|---|
| interphase | GO:0051325 | | 4.012E-06 | 1.072E-03 |
|---|
| negative regulation of protein ubiquitination | GO:0031397 | | 1.162E-05 | 2.795E-03 |
|---|
| activation of Ras GTPase activity | GO:0032856 | | 1.162E-05 | 2.541E-03 |
|---|
Loi_GPL570 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| embryonic cleavage | GO:0040016 | | 3.934E-12 | 9.612E-09 |
|---|
| DNA topological change | GO:0006265 | | 5.497E-11 | 6.714E-08 |
|---|
| DNA unwinding during replication | GO:0006268 | | 1.857E-09 | 1.512E-06 |
|---|
| DNA duplex unwinding | GO:0032508 | | 3.773E-09 | 2.304E-06 |
|---|
| DNA-dependent DNA replication | GO:0006261 | | 2.062E-07 | 1.007E-04 |
|---|
| response to drug | GO:0042493 | | 1.369E-06 | 5.576E-04 |
|---|
| G2/M transition of mitotic cell cycle | GO:0000086 | | 1.982E-06 | 6.917E-04 |
|---|
| interphase of mitotic cell cycle | GO:0051329 | | 2.664E-06 | 8.135E-04 |
|---|
| negative regulation of protein ubiquitination | GO:0031397 | | 9.402E-06 | 2.552E-03 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 1.29E-05 | 3.151E-03 |
|---|
| protein refolding | GO:0042026 | | 1.409E-05 | 3.13E-03 |
|---|
Loi_GPL96-GPL97 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| embryonic cleavage | GO:0040016 | | 5.965E-12 | 1.435E-08 |
|---|
| DNA topological change | GO:0006265 | | 8.332E-11 | 1.002E-07 |
|---|
| DNA unwinding during replication | GO:0006268 | | 2.813E-09 | 2.256E-06 |
|---|
| DNA duplex unwinding | GO:0032508 | | 5.714E-09 | 3.437E-06 |
|---|
| DNA-dependent DNA replication | GO:0006261 | | 2.443E-07 | 1.176E-04 |
|---|
| response to drug | GO:0042493 | | 1.966E-06 | 7.886E-04 |
|---|
| G2/M transition of mitotic cell cycle | GO:0000086 | | 2.712E-06 | 9.32E-04 |
|---|
| interphase of mitotic cell cycle | GO:0051329 | | 3.544E-06 | 1.066E-03 |
|---|
| interphase | GO:0051325 | | 4.012E-06 | 1.072E-03 |
|---|
| negative regulation of protein ubiquitination | GO:0031397 | | 1.162E-05 | 2.795E-03 |
|---|
| activation of Ras GTPase activity | GO:0032856 | | 1.162E-05 | 2.541E-03 |
|---|
Parker_GPL1390 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| cyclin-dependent protein kinase holoenzyme complex | GO:0000307 | | 2.306E-08 | 8.235E-05 |
|---|
| cyclin-dependent protein kinase regulator activity | GO:0016538 | | 6.786E-08 | 1.212E-04 |
|---|
| regulation of Ras GTPase activity | GO:0032318 | | 3.859E-07 | 4.593E-04 |
|---|
| regulation of GTPase activity | GO:0043087 | | 8.391E-07 | 7.491E-04 |
|---|
| cysteine-type endopeptidase inhibitor activity | GO:0004869 | | 1.655E-06 | 1.182E-03 |
|---|
| regulation of Rab protein signal transduction | GO:0032483 | | 4.009E-06 | 2.386E-03 |
|---|
| Rab GTPase activator activity | GO:0005097 | | 4.324E-06 | 2.206E-03 |
|---|
| chaperone-mediated protein complex assembly | GO:0051131 | | 6.073E-06 | 2.711E-03 |
|---|
| nitric-oxide synthase regulator activity | GO:0030235 | | 6.073E-06 | 2.409E-03 |
|---|
| negative regulation of protein ubiquitination | GO:0031397 | | 6.073E-06 | 2.169E-03 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 6.143E-06 | 1.994E-03 |
|---|
Parker_GPL887 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| cyclin-dependent protein kinase holoenzyme complex | GO:0000307 | | 2.325E-08 | 8.482E-05 |
|---|
| midbody | GO:0030496 | | 9.117E-08 | 1.663E-04 |
|---|
| cyclin-dependent protein kinase regulator activity | GO:0016538 | | 1.507E-07 | 1.833E-04 |
|---|
| G2/M transition of mitotic cell cycle | GO:0000086 | | 2.316E-07 | 2.112E-04 |
|---|
| spindle microtubule | GO:0005876 | | 3.372E-07 | 2.46E-04 |
|---|
| interphase of mitotic cell cycle | GO:0051329 | | 4.282E-07 | 2.603E-04 |
|---|
| chaperone binding | GO:0051087 | | 4.706E-07 | 2.453E-04 |
|---|
| interphase | GO:0051325 | | 4.725E-07 | 2.154E-04 |
|---|
| microtubule organizing center part | GO:0044450 | | 2.036E-06 | 8.252E-04 |
|---|
| cysteine-type endopeptidase inhibitor activity | GO:0004869 | | 2.238E-06 | 8.165E-04 |
|---|
| positive regulation of cell cycle | GO:0045787 | | 5.039E-06 | 1.671E-03 |
|---|
Pawitan_GPL96-GPL97 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| embryonic cleavage | GO:0040016 | | 5.965E-12 | 1.435E-08 |
|---|
| DNA topological change | GO:0006265 | | 8.332E-11 | 1.002E-07 |
|---|
| DNA unwinding during replication | GO:0006268 | | 2.813E-09 | 2.256E-06 |
|---|
| DNA duplex unwinding | GO:0032508 | | 5.714E-09 | 3.437E-06 |
|---|
| DNA-dependent DNA replication | GO:0006261 | | 2.443E-07 | 1.176E-04 |
|---|
| response to drug | GO:0042493 | | 1.966E-06 | 7.886E-04 |
|---|
| G2/M transition of mitotic cell cycle | GO:0000086 | | 2.712E-06 | 9.32E-04 |
|---|
| interphase of mitotic cell cycle | GO:0051329 | | 3.544E-06 | 1.066E-03 |
|---|
| interphase | GO:0051325 | | 4.012E-06 | 1.072E-03 |
|---|
| negative regulation of protein ubiquitination | GO:0031397 | | 1.162E-05 | 2.795E-03 |
|---|
| activation of Ras GTPase activity | GO:0032856 | | 1.162E-05 | 2.541E-03 |
|---|
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| DNA topological change | GO:0006265 | | 6.55E-08 | 1.507E-04 |
|---|
| DNA unwinding during replication | GO:0006268 | | 1.182E-06 | 1.36E-03 |
|---|
| DNA duplex unwinding | GO:0032508 | | 2.202E-06 | 1.688E-03 |
|---|
| G2/M transition of mitotic cell cycle | GO:0000086 | | 4.289E-06 | 2.466E-03 |
|---|
| interphase of mitotic cell cycle | GO:0051329 | | 8.787E-06 | 4.042E-03 |
|---|
| interphase | GO:0051325 | | 9.628E-06 | 3.691E-03 |
|---|
| negative regulation of protein ubiquitination | GO:0031397 | | 2.291E-05 | 7.526E-03 |
|---|
| positive regulation of Rho GTPase activity | GO:0032321 | | 2.291E-05 | 6.585E-03 |
|---|
| protein refolding | GO:0042026 | | 3.433E-05 | 8.772E-03 |
|---|
| spindle checkpoint | GO:0031577 | | 3.433E-05 | 7.895E-03 |
|---|
| establishment of chromosome localization | GO:0051303 | | 3.433E-05 | 7.177E-03 |
|---|
Sotiriou file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| DNA topological change | GO:0006265 | | 6.55E-08 | 1.507E-04 |
|---|
| DNA unwinding during replication | GO:0006268 | | 1.182E-06 | 1.36E-03 |
|---|
| DNA duplex unwinding | GO:0032508 | | 2.202E-06 | 1.688E-03 |
|---|
| G2/M transition of mitotic cell cycle | GO:0000086 | | 4.289E-06 | 2.466E-03 |
|---|
| interphase of mitotic cell cycle | GO:0051329 | | 8.787E-06 | 4.042E-03 |
|---|
| interphase | GO:0051325 | | 9.628E-06 | 3.691E-03 |
|---|
| negative regulation of protein ubiquitination | GO:0031397 | | 2.291E-05 | 7.526E-03 |
|---|
| positive regulation of Rho GTPase activity | GO:0032321 | | 2.291E-05 | 6.585E-03 |
|---|
| protein refolding | GO:0042026 | | 3.433E-05 | 8.772E-03 |
|---|
| spindle checkpoint | GO:0031577 | | 3.433E-05 | 7.895E-03 |
|---|
| establishment of chromosome localization | GO:0051303 | | 3.433E-05 | 7.177E-03 |
|---|
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| DNA topological change | GO:0006265 | | 6.55E-08 | 1.507E-04 |
|---|
| DNA unwinding during replication | GO:0006268 | | 1.182E-06 | 1.36E-03 |
|---|
| DNA duplex unwinding | GO:0032508 | | 2.202E-06 | 1.688E-03 |
|---|
| G2/M transition of mitotic cell cycle | GO:0000086 | | 4.289E-06 | 2.466E-03 |
|---|
| interphase of mitotic cell cycle | GO:0051329 | | 8.787E-06 | 4.042E-03 |
|---|
| interphase | GO:0051325 | | 9.628E-06 | 3.691E-03 |
|---|
| negative regulation of protein ubiquitination | GO:0031397 | | 2.291E-05 | 7.526E-03 |
|---|
| positive regulation of Rho GTPase activity | GO:0032321 | | 2.291E-05 | 6.585E-03 |
|---|
| protein refolding | GO:0042026 | | 3.433E-05 | 8.772E-03 |
|---|
| spindle checkpoint | GO:0031577 | | 3.433E-05 | 7.895E-03 |
|---|
| establishment of chromosome localization | GO:0051303 | | 3.433E-05 | 7.177E-03 |
|---|
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| DNA topological change | GO:0006265 | | 6.55E-08 | 1.507E-04 |
|---|
| DNA unwinding during replication | GO:0006268 | | 1.182E-06 | 1.36E-03 |
|---|
| DNA duplex unwinding | GO:0032508 | | 2.202E-06 | 1.688E-03 |
|---|
| G2/M transition of mitotic cell cycle | GO:0000086 | | 4.289E-06 | 2.466E-03 |
|---|
| interphase of mitotic cell cycle | GO:0051329 | | 8.787E-06 | 4.042E-03 |
|---|
| interphase | GO:0051325 | | 9.628E-06 | 3.691E-03 |
|---|
| negative regulation of protein ubiquitination | GO:0031397 | | 2.291E-05 | 7.526E-03 |
|---|
| positive regulation of Rho GTPase activity | GO:0032321 | | 2.291E-05 | 6.585E-03 |
|---|
| protein refolding | GO:0042026 | | 3.433E-05 | 8.772E-03 |
|---|
| spindle checkpoint | GO:0031577 | | 3.433E-05 | 7.895E-03 |
|---|
| establishment of chromosome localization | GO:0051303 | | 3.433E-05 | 7.177E-03 |
|---|
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| detection of mechanical stimulus | GO:0050982 | | 3.419E-09 | 8.113E-06 |
|---|
| cartilage condensation | GO:0001502 | | 4.781E-09 | 5.673E-06 |
|---|
| protein refolding | GO:0042026 | | 6.836E-08 | 5.408E-05 |
|---|
| outer mitochondrial membrane organization | GO:0007008 | | 1.195E-07 | 7.09E-05 |
|---|
| DNA topological change | GO:0006265 | | 1.195E-07 | 5.672E-05 |
|---|
| chaperone-mediated protein complex assembly | GO:0051131 | | 1.91E-07 | 7.555E-05 |
|---|
| response to mechanical stimulus | GO:0009612 | | 2.167E-07 | 7.347E-05 |
|---|
| cell cycle arrest | GO:0007050 | | 3.096E-07 | 9.182E-05 |
|---|
| JAK-STAT cascade | GO:0007259 | | 6.276E-07 | 1.655E-04 |
|---|
| detection of abiotic stimulus | GO:0009582 | | 8.956E-07 | 2.125E-04 |
|---|
| cartilage development | GO:0051216 | | 1.676E-06 | 3.616E-04 |
|---|
