Study run-a1
Study informations
119 subnetworks in total page | file
406 genes associated page | file
Enriched GO terms page
General informations
General Index page
Study Index page
Subnetwork 5339-6-real
score
| Dataset | Score | P-val 1 | P-val 2 | P-val 3 |
|---|
| Desmedt | 0.2192 | 4.452e-03 | 5.285e-03 | 5.326e-02 |
|---|
| IPC-NIBC-129 | 0.2659 | 3.659e-02 | 4.561e-02 | 3.640e-01 |
|---|
| Ivshina_GPL96-GPL97 | 0.2874 | 1.154e-02 | 1.751e-02 | 2.866e-01 |
|---|
| Loi_GPL570 | 0.2362 | 4.944e-02 | 4.907e-02 | 2.527e-01 |
|---|
| Loi_GPL96-GPL97 | 0.1561 | 9.000e-06 | 5.900e-05 | 6.400e-05 |
|---|
| Parker_GPL1390 | 0.2809 | 7.510e-02 | 7.296e-02 | 4.688e-01 |
|---|
| Parker_GPL887 | 0.1101 | 6.134e-01 | 6.433e-01 | 6.626e-01 |
|---|
| Pawitan_GPL96-GPL97 | 0.3223 | 9.127e-02 | 6.578e-02 | 4.900e-01 |
|---|
| Schmidt | 0.2408 | 8.768e-03 | 1.260e-02 | 1.180e-01 |
|---|
| Sotiriou | 0.3232 | 2.163e-03 | 6.020e-04 | 5.611e-02 |
|---|
| Wang | 0.2273 | 1.179e-01 | 8.335e-02 | 4.064e-01 |
|---|
| Zhang | 0.2800 | 5.281e-02 | 3.049e-02 | 1.339e-01 |
|---|
| Zhou | 0.4216 | 8.765e-02 | 9.572e-02 | 5.025e-01 |
|---|
Expression data for subnetwork 5339-6-real in each dataset
Desmedt |
IPC-NIBC-129 |
Ivshina_GPL96-GPL97 |
Loi_GPL570 |
Loi_GPL96-GPL97 |
Parker_GPL1390 |
Parker_GPL887 |
Pawitan_GPL96-GPL97 |
Schmidt |
Sotiriou |
Wang |
Zhang |
Zhou |
Subnetwork structure for each dataset
- Desmedt
Score for each gene in subnetwork 5339-6-real in each dataset
| Gene Symbol | Links | Frequency | Frequency Rank | Subnetwork score rank | Global rank |
Desmedt | IPC-NIBC-129 | Ivshina_GPL96-GPL97 | Loi_GPL570 | Loi_GPL96-GPL97 | Parker_GPL1390 | Parker_GPL887 | Pawitan_GPL96-GPL97 | Schmidt | Sotiriou | Wang | Zhang | Zhou |
|---|
| rrm2 |   | 21 | 10 | 44 | 26 | 0.131 | 0.207 | 0.227 | 0.187 | 0.161 | 0.178 | 0.137 | 0.303 | 0.190 | 0.219 | 0.117 | 0.129 | 0.302 |
|---|
| cdkn1a | | 70 | 3 | 73 | 51 | 0.115 | -0.020 | 0.065 | 0.082 | 0.099 | 0.124 | 0.055 | 0.087 | 0.068 | 0.144 | 0.015 | -0.201 | 0.069 |
|---|
| ccnd1 | | 102 | 2 | 1 | 2 | 0.127 | -0.183 | 0.062 | 0.190 | 0.157 | -0.002 | -0.190 | 0.105 | -0.107 | 0.174 | 0.106 | 0.144 | 0.290 |
|---|
| cks2 | | 44 | 6 | 73 | 54 | 0.050 | 0.233 | 0.170 | 0.103 | 0.186 | 0.172 | 0.093 | 0.167 | 0.263 | 0.151 | 0.145 | 0.284 | 0.383 |
|---|
| tsc1 | | 47 | 5 | 17 | 8 | 0.049 | 0.012 | -0.055 | 0.072 | 0.055 | -0.144 | -0.242 | -0.196 | 0.006 | 0.010 | 0.043 | -0.007 | 0.207 |
|---|
| orc6l | | 8 | 33 | 73 | 61 | 0.094 | 0.270 | 0.084 | 0.114 | 0.106 | 0.240 | 0.256 | 0.234 | 0.192 | 0.105 | 0.086 | 0.175 | 0.160 |
|---|
| cdc2 | | 103 | 1 | 1 | 1 | 0.073 | 0.247 | 0.206 | 0.172 | 0.247 | 0.153 | -0.131 | 0.282 | 0.226 | 0.221 | 0.067 | 0.297 | 0.336 |
|---|
| plec1 | | 1 | 164 | 107 | 123 | 0.148 | -0.022 | 0.001 | -0.039 | 0.061 | -0.005 | 0.052 | 0.051 | -0.074 | 0.075 | 0.079 | -0.069 | 0.243 |
|---|
| sfn | | 50 | 4 | 29 | 17 | 0.077 | 0.137 | 0.111 | 0.172 | 0.112 | 0.119 | 0.141 | 0.219 | 0.100 | 0.147 | 0.025 | 0.079 | 0.181 |
|---|
| clec11a | | 17 | 12 | 44 | 27 | 0.013 | 0.101 | 0.071 | -0.085 | 0.066 | 0.082 | 0.209 | -0.126 | -0.034 | -0.001 | 0.191 | 0.059 | -0.075 |
|---|
| eif2s1 | | 14 | 17 | 73 | 57 | -0.031 | 0.151 | 0.253 | 0.182 | 0.098 | 0.167 | 0.005 | 0.270 | 0.233 | 0.038 | 0.122 | 0.239 | 0.265 |
|---|
GO Enrichment output for subnetwork 5339-6-real in each dataset
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 |  | 1.948E-09 | 4.48E-06 |
|---|
| deoxyribonucleotide biosynthetic process | GO:0009263 | | 2.172E-08 | 2.498E-05 |
|---|
| nucleoside diphosphate metabolic process | GO:0009132 | | 3.799E-08 | 2.912E-05 |
|---|
| deoxyribonucleotide metabolic process | GO:0009262 | | 1.43E-06 | 8.221E-04 |
|---|
| induction of apoptosis by intracellular signals | GO:0008629 | | 1.048E-05 | 4.822E-03 |
|---|
| negative regulation of protein ubiquitination | GO:0031397 | | 1.117E-05 | 4.282E-03 |
|---|
| positive regulation of Rho GTPase activity | GO:0032321 | | 1.117E-05 | 3.67E-03 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 1.307E-05 | 3.757E-03 |
|---|
| response to UV | GO:0009411 | | 1.604E-05 | 4.099E-03 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 2.343E-05 | 5.388E-03 |
|---|
| regulation of focal adhesion formation | GO:0051893 | | 2.343E-05 | 4.898E-03 |
|---|
IPC-NIBC-129 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 1.349E-10 | 3.295E-07 |
|---|
| induction of apoptosis by intracellular signals | GO:0008629 | | 2.129E-06 | 2.601E-03 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 2.277E-06 | 1.854E-03 |
|---|
| negative regulation of protein ubiquitination | GO:0031397 | | 3.005E-06 | 1.835E-03 |
|---|
| response to UV | GO:0009411 | | 3.923E-06 | 1.917E-03 |
|---|
| activation of Ras GTPase activity | GO:0032856 | | 4.506E-06 | 1.835E-03 |
|---|
| deoxyribonucleotide biosynthetic process | GO:0009263 | | 6.306E-06 | 2.201E-03 |
|---|
| negative regulation of protein kinase activity | GO:0006469 | | 7.795E-06 | 2.38E-03 |
|---|
| negative regulation of kinase activity | GO:0033673 | | 8.141E-06 | 2.21E-03 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 8.405E-06 | 2.053E-03 |
|---|
| regulation of focal adhesion formation | GO:0051893 | | 8.405E-06 | 1.867E-03 |
|---|
Ivshina_GPL96-GPL97 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 3.078E-10 | 7.405E-07 |
|---|
| deoxyribonucleotide biosynthetic process | GO:0009263 | | 8.75E-09 | 1.053E-05 |
|---|
| nucleoside diphosphate metabolic process | GO:0009132 | | 2.098E-08 | 1.683E-05 |
|---|
| deoxyribonucleotide metabolic process | GO:0009262 | | 3.826E-07 | 2.301E-04 |
|---|
| induction of apoptosis by intracellular signals | GO:0008629 | | 3.491E-06 | 1.68E-03 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 3.733E-06 | 1.497E-03 |
|---|
| negative regulation of protein ubiquitination | GO:0031397 | | 4.185E-06 | 1.438E-03 |
|---|
| activation of Ras GTPase activity | GO:0032856 | | 4.185E-06 | 1.259E-03 |
|---|
| response to UV | GO:0009411 | | 5.743E-06 | 1.535E-03 |
|---|
| negative regulation of protein kinase activity | GO:0006469 | | 1.168E-05 | 2.809E-03 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 1.17E-05 | 2.56E-03 |
|---|
Loi_GPL570 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 1.349E-10 | 3.295E-07 |
|---|
| induction of apoptosis by intracellular signals | GO:0008629 | | 2.129E-06 | 2.601E-03 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 2.277E-06 | 1.854E-03 |
|---|
| negative regulation of protein ubiquitination | GO:0031397 | | 3.005E-06 | 1.835E-03 |
|---|
| response to UV | GO:0009411 | | 3.923E-06 | 1.917E-03 |
|---|
| activation of Ras GTPase activity | GO:0032856 | | 4.506E-06 | 1.835E-03 |
|---|
| deoxyribonucleotide biosynthetic process | GO:0009263 | | 6.306E-06 | 2.201E-03 |
|---|
| negative regulation of protein kinase activity | GO:0006469 | | 7.795E-06 | 2.38E-03 |
|---|
| negative regulation of kinase activity | GO:0033673 | | 8.141E-06 | 2.21E-03 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 8.405E-06 | 2.053E-03 |
|---|
| regulation of focal adhesion formation | GO:0051893 | | 8.405E-06 | 1.867E-03 |
|---|
Loi_GPL96-GPL97 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 3.078E-10 | 7.405E-07 |
|---|
| deoxyribonucleotide biosynthetic process | GO:0009263 | | 8.75E-09 | 1.053E-05 |
|---|
| nucleoside diphosphate metabolic process | GO:0009132 | | 2.098E-08 | 1.683E-05 |
|---|
| deoxyribonucleotide metabolic process | GO:0009262 | | 3.826E-07 | 2.301E-04 |
|---|
| induction of apoptosis by intracellular signals | GO:0008629 | | 3.491E-06 | 1.68E-03 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 3.733E-06 | 1.497E-03 |
|---|
| negative regulation of protein ubiquitination | GO:0031397 | | 4.185E-06 | 1.438E-03 |
|---|
| activation of Ras GTPase activity | GO:0032856 | | 4.185E-06 | 1.259E-03 |
|---|
| response to UV | GO:0009411 | | 5.743E-06 | 1.535E-03 |
|---|
| negative regulation of protein kinase activity | GO:0006469 | | 1.168E-05 | 2.809E-03 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 1.17E-05 | 2.56E-03 |
|---|
Parker_GPL1390 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| cyclin-dependent protein kinase regulator activity | GO:0016538 | | 3.522E-11 | 1.258E-07 |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 9.116E-11 | 1.628E-07 |
|---|
| protein kinase regulator activity | GO:0019887 | | 3.268E-10 | 3.889E-07 |
|---|
| kinase regulator activity | GO:0019207 | | 8.436E-10 | 7.531E-07 |
|---|
| cyclin-dependent protein kinase holoenzyme complex | GO:0000307 | | 1.259E-08 | 8.989E-06 |
|---|
| protein serine/threonine kinase inhibitor activity | GO:0030291 | | 8.163E-08 | 4.858E-05 |
|---|
| protein kinase inhibitor activity | GO:0004860 | | 7.31E-07 | 3.729E-04 |
|---|
| kinase inhibitor activity | GO:0019210 | | 9.053E-07 | 4.041E-04 |
|---|
| induction of apoptosis by intracellular signals | GO:0008629 | | 2.739E-06 | 1.087E-03 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 3.366E-06 | 1.202E-03 |
|---|
| response to UV | GO:0009411 | | 4.081E-06 | 1.325E-03 |
|---|
Parker_GPL887 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 5.599E-11 | 2.042E-07 |
|---|
| cyclin-dependent protein kinase regulator activity | GO:0016538 | | 6.438E-11 | 1.174E-07 |
|---|
| protein kinase regulator activity | GO:0019887 | | 2.121E-10 | 2.58E-07 |
|---|
| kinase regulator activity | GO:0019207 | | 4.374E-10 | 3.989E-07 |
|---|
| cyclin-dependent protein kinase holoenzyme complex | GO:0000307 | | 8.439E-09 | 6.157E-06 |
|---|
| protein serine/threonine kinase inhibitor activity | GO:0030291 | | 8.417E-08 | 5.118E-05 |
|---|
| protein kinase inhibitor activity | GO:0004860 | | 8.943E-07 | 4.66E-04 |
|---|
| kinase inhibitor activity | GO:0019210 | | 9.778E-07 | 4.459E-04 |
|---|
| induction of apoptosis by intracellular signals | GO:0008629 | | 1.589E-06 | 6.443E-04 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 1.839E-06 | 6.708E-04 |
|---|
| response to UV | GO:0009411 | | 2.113E-06 | 7.008E-04 |
|---|
Pawitan_GPL96-GPL97 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 3.078E-10 | 7.405E-07 |
|---|
| deoxyribonucleotide biosynthetic process | GO:0009263 | | 8.75E-09 | 1.053E-05 |
|---|
| nucleoside diphosphate metabolic process | GO:0009132 | | 2.098E-08 | 1.683E-05 |
|---|
| deoxyribonucleotide metabolic process | GO:0009262 | | 3.826E-07 | 2.301E-04 |
|---|
| induction of apoptosis by intracellular signals | GO:0008629 | | 3.491E-06 | 1.68E-03 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 3.733E-06 | 1.497E-03 |
|---|
| negative regulation of protein ubiquitination | GO:0031397 | | 4.185E-06 | 1.438E-03 |
|---|
| activation of Ras GTPase activity | GO:0032856 | | 4.185E-06 | 1.259E-03 |
|---|
| response to UV | GO:0009411 | | 5.743E-06 | 1.535E-03 |
|---|
| negative regulation of protein kinase activity | GO:0006469 | | 1.168E-05 | 2.809E-03 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 1.17E-05 | 2.56E-03 |
|---|
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 1.948E-09 | 4.48E-06 |
|---|
| deoxyribonucleotide biosynthetic process | GO:0009263 | | 2.172E-08 | 2.498E-05 |
|---|
| nucleoside diphosphate metabolic process | GO:0009132 | | 3.799E-08 | 2.912E-05 |
|---|
| deoxyribonucleotide metabolic process | GO:0009262 | | 1.43E-06 | 8.221E-04 |
|---|
| induction of apoptosis by intracellular signals | GO:0008629 | | 1.048E-05 | 4.822E-03 |
|---|
| negative regulation of protein ubiquitination | GO:0031397 | | 1.117E-05 | 4.282E-03 |
|---|
| positive regulation of Rho GTPase activity | GO:0032321 | | 1.117E-05 | 3.67E-03 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 1.307E-05 | 3.757E-03 |
|---|
| response to UV | GO:0009411 | | 1.604E-05 | 4.099E-03 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 2.343E-05 | 5.388E-03 |
|---|
| regulation of focal adhesion formation | GO:0051893 | | 2.343E-05 | 4.898E-03 |
|---|
Sotiriou file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 1.948E-09 | 4.48E-06 |
|---|
| deoxyribonucleotide biosynthetic process | GO:0009263 | | 2.172E-08 | 2.498E-05 |
|---|
| nucleoside diphosphate metabolic process | GO:0009132 | | 3.799E-08 | 2.912E-05 |
|---|
| deoxyribonucleotide metabolic process | GO:0009262 | | 1.43E-06 | 8.221E-04 |
|---|
| induction of apoptosis by intracellular signals | GO:0008629 | | 1.048E-05 | 4.822E-03 |
|---|
| negative regulation of protein ubiquitination | GO:0031397 | | 1.117E-05 | 4.282E-03 |
|---|
| positive regulation of Rho GTPase activity | GO:0032321 | | 1.117E-05 | 3.67E-03 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 1.307E-05 | 3.757E-03 |
|---|
| response to UV | GO:0009411 | | 1.604E-05 | 4.099E-03 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 2.343E-05 | 5.388E-03 |
|---|
| regulation of focal adhesion formation | GO:0051893 | | 2.343E-05 | 4.898E-03 |
|---|
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 1.948E-09 | 4.48E-06 |
|---|
| deoxyribonucleotide biosynthetic process | GO:0009263 | | 2.172E-08 | 2.498E-05 |
|---|
| nucleoside diphosphate metabolic process | GO:0009132 | | 3.799E-08 | 2.912E-05 |
|---|
| deoxyribonucleotide metabolic process | GO:0009262 | | 1.43E-06 | 8.221E-04 |
|---|
| induction of apoptosis by intracellular signals | GO:0008629 | | 1.048E-05 | 4.822E-03 |
|---|
| negative regulation of protein ubiquitination | GO:0031397 | | 1.117E-05 | 4.282E-03 |
|---|
| positive regulation of Rho GTPase activity | GO:0032321 | | 1.117E-05 | 3.67E-03 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 1.307E-05 | 3.757E-03 |
|---|
| response to UV | GO:0009411 | | 1.604E-05 | 4.099E-03 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 2.343E-05 | 5.388E-03 |
|---|
| regulation of focal adhesion formation | GO:0051893 | | 2.343E-05 | 4.898E-03 |
|---|
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 1.948E-09 | 4.48E-06 |
|---|
| deoxyribonucleotide biosynthetic process | GO:0009263 | | 2.172E-08 | 2.498E-05 |
|---|
| nucleoside diphosphate metabolic process | GO:0009132 | | 3.799E-08 | 2.912E-05 |
|---|
| deoxyribonucleotide metabolic process | GO:0009262 | | 1.43E-06 | 8.221E-04 |
|---|
| induction of apoptosis by intracellular signals | GO:0008629 | | 1.048E-05 | 4.822E-03 |
|---|
| negative regulation of protein ubiquitination | GO:0031397 | | 1.117E-05 | 4.282E-03 |
|---|
| positive regulation of Rho GTPase activity | GO:0032321 | | 1.117E-05 | 3.67E-03 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 1.307E-05 | 3.757E-03 |
|---|
| response to UV | GO:0009411 | | 1.604E-05 | 4.099E-03 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 2.343E-05 | 5.388E-03 |
|---|
| regulation of focal adhesion formation | GO:0051893 | | 2.343E-05 | 4.898E-03 |
|---|
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 2.818E-09 | 6.687E-06 |
|---|
| deoxyribonucleotide biosynthetic process | GO:0009263 | | 4.1E-08 | 4.865E-05 |
|---|
| nucleoside diphosphate metabolic process | GO:0009132 | | 6.555E-08 | 5.185E-05 |
|---|
| deoxyribonucleotide metabolic process | GO:0009262 | | 1.785E-06 | 1.059E-03 |
|---|
| negative regulation of protein ubiquitination | GO:0031397 | | 1.166E-05 | 5.533E-03 |
|---|
| induction of apoptosis by intracellular signals | GO:0008629 | | 1.311E-05 | 5.187E-03 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 1.511E-05 | 5.122E-03 |
|---|
| positive regulation of Rho GTPase activity | GO:0032321 | | 1.747E-05 | 5.183E-03 |
|---|
| response to UV | GO:0009411 | | 1.846E-05 | 4.867E-03 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 2.445E-05 | 5.802E-03 |
|---|
| negative regulation of cyclin-dependent protein kinase activity | GO:0045736 | | 3.258E-05 | 7.027E-03 |
|---|
