Study run-a1

Study informations

119 subnetworks in total page | file

406 genes associated page | file

Enriched GO terms page

General informations

General Index page

Study Index page

Subnetwork 51022-5-real

score

Dataset	Score	P-val 1	P-val 2	P-val 3
Desmedt	0.2208	4.322e-03	5.129e-03	5.204e-02
IPC-NIBC-129	0.2780	3.528e-02	4.387e-02	3.544e-01
Ivshina_GPL96-GPL97	0.2888	1.672e-02	2.445e-02	3.535e-01
Loi_GPL570	0.2188	4.187e-02	4.154e-02	2.232e-01
Loi_GPL96-GPL97	0.1650	9.000e-06	6.000e-05	6.600e-05
Parker_GPL1390	0.2835	7.343e-02	7.119e-02	4.634e-01
Parker_GPL887	0.1630	4.485e-01	4.831e-01	4.762e-01
Pawitan_GPL96-GPL97	0.3435	6.129e-01	5.889e-01	9.884e-01
Schmidt	0.2405	7.262e-03	1.052e-02	1.017e-01
Sotiriou	0.3346	3.943e-03	1.286e-03	8.626e-02
Wang	0.2061	1.021e-01	7.049e-02	3.706e-01
Zhang	0.0806	7.192e-02	4.414e-02	1.785e-01
Zhou	0.3854	7.175e-02	7.700e-02	4.312e-01

Expression data for subnetwork 51022-5-real in each dataset

Desmedt | IPC-NIBC-129 | Ivshina_GPL96-GPL97 | Loi_GPL570 | Loi_GPL96-GPL97 | Parker_GPL1390 | Parker_GPL887 | Pawitan_GPL96-GPL97 | Schmidt | Sotiriou | Wang | Zhang | Zhou |

Subnetwork structure for each dataset

Desmedt IPC-NIBC-129 Ivshina_GPL96-GPL97 Loi_GPL570 Loi_GPL96-GPL97 Parker_GPL1390 Parker_GPL887 Pawitan_GPL96-GPL97 Schmidt Sotiriou Wang Zhang Zhou

Desmedt

Score for each gene in subnetwork 51022-5-real in each dataset

Gene Symbol	Links	Frequency	Frequency Rank	Subnetwork score rank	Global rank	Desmedt	IPC-NIBC-129	Ivshina_GPL96-GPL97	Loi_GPL570	Loi_GPL96-GPL97	Parker_GPL1390	Parker_GPL887	Pawitan_GPL96-GPL97	Schmidt	Sotiriou	Wang	Zhang	Zhou
rrm2		21	10	44	26	0.131	0.207	0.227	0.187	0.161	0.178	0.137	0.303	0.190	0.219	0.117	0.129	0.302
luc7l3		7	38	1	5	0.006	0.111	-0.046	-0.016	0.121	0.071	-0.318	-0.084	0.159	0.098	0.155	0.067	0.065
eif4g1		5	50	153	142	0.123	0.262	0.043	0.013	0.098	0.189	0.016	0.194	0.076	0.147	-0.154	-0.028	0.268
hspb1		19	11	17	11	0.190	-0.050	0.184	0.212	0.231	-0.026	-0.065	0.289	-0.021	0.201	0.125	-0.077	0.290
txn		1	164	244	247	0.052	0.168	0.117	0.209	0.171	0.155	0.166	0.246	0.161	0.168	0.115	0.132	0.324
sf3b3		7	38	1	5	0.119	0.241	0.143	-0.019	0.082	0.222	0.007	0.271	0.168	0.060	0.017	-0.077	0.372
txnrd1		1	164	244	247	0.090	0.133	0.124	0.256	0.156	0.162	0.204	0.101	0.169	0.142	0.155	0.118	0.215
clec11a		17	12	44	27	0.013	0.101	0.071	-0.085	0.066	0.082	0.209	-0.126	-0.034	-0.001	0.191	0.059	-0.075
glrx2		1	164	244	247	0.038	0.231	0.122	0.021	0.152	-0.160	0.135	0.284	0.131	0.171	0.127	0.070	0.130

GO Enrichment output for subnetwork 51022-5-real in each dataset

Desmedt file

Name	Accession Number	Link	P-val	Corrected P-val
deoxyribonucleotide biosynthetic process	GO:0009263		1.256E-08	2.888E-05
nucleoside diphosphate metabolic process	GO:0009132		2.197E-08	2.526E-05
cell redox homeostasis	GO:0045454		7.46E-08	5.719E-05
protein oligomerization	GO:0051259		3.063E-07	1.761E-04
deoxyribonucleotide metabolic process	GO:0009262		8.282E-07	3.81E-04
electron transport chain	GO:0022900		1.358E-06	5.204E-04
response to hydrogen peroxide	GO:0042542		2.265E-06	7.443E-04
response to reactive oxygen species	GO:0000302		4.409E-06	1.268E-03
protein thiol-disulfide exchange	GO:0006467		7.841E-06	2.004E-03
regulation of translational initiation	GO:0006446		8.719E-06	2.005E-03
response to temperature stimulus	GO:0009266		1.061E-05	2.218E-03

IPC-NIBC-129 file

Name	Accession Number	Link	P-val	Corrected P-val
cell redox homeostasis	GO:0045454		1.245E-12	3.043E-09
response to hydrogen peroxide	GO:0042542		6.781E-12	8.283E-09
response to reactive oxygen species	GO:0000302		2.638E-11	2.148E-08
cellular response to hydrogen peroxide	GO:0070301		2.248E-10	1.373E-07
cellular response to reactive oxygen species	GO:0034614		5.129E-10	2.506E-07
hydrogen peroxide metabolic process	GO:0042743		8.65E-10	3.522E-07
cellular response to oxidative stress	GO:0034599		1.015E-09	3.543E-07
mesoderm formation	GO:0001707		2.076E-09	6.341E-07
formation of primary germ layer	GO:0001704		2.676E-09	7.264E-07
mesoderm morphogenesis	GO:0048332		3.02E-09	7.379E-07
gastrulation	GO:0007369		2.428E-08	5.393E-06

Ivshina_GPL96-GPL97 file

Name	Accession Number	Link	P-val	Corrected P-val
cell redox homeostasis	GO:0045454		4.198E-10	1.01E-06
response to hydrogen peroxide	GO:0042542		4.022E-09	4.838E-06
deoxyribonucleotide biosynthetic process	GO:0009263		7.438E-09	5.965E-06
response to reactive oxygen species	GO:0000302		1.247E-08	7.5E-06
nucleoside diphosphate metabolic process	GO:0009132		1.784E-08	8.583E-06
protein oligomerization	GO:0051259		1.566E-07	6.281E-05
cellular response to hydrogen peroxide	GO:0070301		1.727E-07	5.934E-05
deoxyribonucleotide metabolic process	GO:0009262		3.253E-07	9.784E-05
cellular response to reactive oxygen species	GO:0034614		3.253E-07	8.697E-05
hydrogen peroxide metabolic process	GO:0042743		4.853E-07	1.168E-04
cellular response to oxidative stress	GO:0034599		5.484E-07	1.199E-04

Loi_GPL570 file

Name	Accession Number	Link	P-val	Corrected P-val
cell redox homeostasis	GO:0045454		1.245E-12	3.043E-09
response to hydrogen peroxide	GO:0042542		6.781E-12	8.283E-09
response to reactive oxygen species	GO:0000302		2.638E-11	2.148E-08
cellular response to hydrogen peroxide	GO:0070301		2.248E-10	1.373E-07
cellular response to reactive oxygen species	GO:0034614		5.129E-10	2.506E-07
hydrogen peroxide metabolic process	GO:0042743		8.65E-10	3.522E-07
cellular response to oxidative stress	GO:0034599		1.015E-09	3.543E-07
mesoderm formation	GO:0001707		2.076E-09	6.341E-07
formation of primary germ layer	GO:0001704		2.676E-09	7.264E-07
mesoderm morphogenesis	GO:0048332		3.02E-09	7.379E-07
gastrulation	GO:0007369		2.428E-08	5.393E-06

Loi_GPL96-GPL97 file

Name	Accession Number	Link	P-val	Corrected P-val
cell redox homeostasis	GO:0045454		4.198E-10	1.01E-06
response to hydrogen peroxide	GO:0042542		4.022E-09	4.838E-06
deoxyribonucleotide biosynthetic process	GO:0009263		7.438E-09	5.965E-06
response to reactive oxygen species	GO:0000302		1.247E-08	7.5E-06
nucleoside diphosphate metabolic process	GO:0009132		1.784E-08	8.583E-06
protein oligomerization	GO:0051259		1.566E-07	6.281E-05
cellular response to hydrogen peroxide	GO:0070301		1.727E-07	5.934E-05
deoxyribonucleotide metabolic process	GO:0009262		3.253E-07	9.784E-05
cellular response to reactive oxygen species	GO:0034614		3.253E-07	8.697E-05
hydrogen peroxide metabolic process	GO:0042743		4.853E-07	1.168E-04
cellular response to oxidative stress	GO:0034599		5.484E-07	1.199E-04

Parker_GPL1390 file

Name	Accession Number	Link	P-val	Corrected P-val
cell redox homeostasis	GO:0045454		1.46E-08	5.213E-05
protein disulfide oxidoreductase activity	GO:0015035		3.458E-08	6.174E-05
disulfide oxidoreductase activity	GO:0015036		7.145E-08	8.504E-05
electron transport chain	GO:0022900		2.452E-07	2.189E-04
response to hydrogen peroxide	GO:0042542		7.748E-07	5.534E-04
oxidoreductase activity. acting on sulfur group of donors	GO:0016667		9.342E-07	5.56E-04
response to reactive oxygen species	GO:0000302		1.661E-06	8.472E-04
regulation of translational initiation	GO:0006446		1.661E-06	7.413E-04
response to temperature stimulus	GO:0009266		2.208E-06	8.76E-04
protein thiol-disulfide exchange	GO:0006467		4.969E-06	1.774E-03
thioredoxin-disulfide reductase activity	GO:0004791		4.969E-06	1.613E-03

Parker_GPL887 file

Name	Accession Number	Link	P-val	Corrected P-val
cell redox homeostasis	GO:0045454		1.098E-08	4.005E-05
protein disulfide oxidoreductase activity	GO:0015035		1.807E-08	3.296E-05
disulfide oxidoreductase activity	GO:0015036		4.978E-08	6.053E-05
electron transport chain	GO:0022900		1.389E-07	1.267E-04
oxidoreductase activity. acting on sulfur group of donors	GO:0016667		5.939E-07	4.333E-04
regulation of translational initiation	GO:0006446		9.17E-07	5.575E-04
response to temperature stimulus	GO:0009266		1.996E-06	1.04E-03
protein thiol-disulfide exchange	GO:0006467		3.848E-06	1.755E-03
deoxyribonucleotide biosynthetic process	GO:0009263		3.848E-06	1.56E-03
oxidoreductase activity. acting on CH or CH2 groups	GO:0016725		5.386E-06	1.965E-03
response to redox state	GO:0051775		5.386E-06	1.786E-03

Pawitan_GPL96-GPL97 file

Name	Accession Number	Link	P-val	Corrected P-val
cell redox homeostasis	GO:0045454		4.198E-10	1.01E-06
response to hydrogen peroxide	GO:0042542		4.022E-09	4.838E-06
deoxyribonucleotide biosynthetic process	GO:0009263		7.438E-09	5.965E-06
response to reactive oxygen species	GO:0000302		1.247E-08	7.5E-06
nucleoside diphosphate metabolic process	GO:0009132		1.784E-08	8.583E-06
protein oligomerization	GO:0051259		1.566E-07	6.281E-05
cellular response to hydrogen peroxide	GO:0070301		1.727E-07	5.934E-05
deoxyribonucleotide metabolic process	GO:0009262		3.253E-07	9.784E-05
cellular response to reactive oxygen species	GO:0034614		3.253E-07	8.697E-05
hydrogen peroxide metabolic process	GO:0042743		4.853E-07	1.168E-04
cellular response to oxidative stress	GO:0034599		5.484E-07	1.199E-04

Schmidt file

Name	Accession Number	Link	P-val	Corrected P-val
deoxyribonucleotide biosynthetic process	GO:0009263		1.256E-08	2.888E-05
nucleoside diphosphate metabolic process	GO:0009132		2.197E-08	2.526E-05
cell redox homeostasis	GO:0045454		7.46E-08	5.719E-05
protein oligomerization	GO:0051259		3.063E-07	1.761E-04
deoxyribonucleotide metabolic process	GO:0009262		8.282E-07	3.81E-04
electron transport chain	GO:0022900		1.358E-06	5.204E-04
response to hydrogen peroxide	GO:0042542		2.265E-06	7.443E-04
response to reactive oxygen species	GO:0000302		4.409E-06	1.268E-03
protein thiol-disulfide exchange	GO:0006467		7.841E-06	2.004E-03
regulation of translational initiation	GO:0006446		8.719E-06	2.005E-03
response to temperature stimulus	GO:0009266		1.061E-05	2.218E-03

Sotiriou file

Name	Accession Number	Link	P-val	Corrected P-val
deoxyribonucleotide biosynthetic process	GO:0009263		1.256E-08	2.888E-05
nucleoside diphosphate metabolic process	GO:0009132		2.197E-08	2.526E-05
cell redox homeostasis	GO:0045454		7.46E-08	5.719E-05
protein oligomerization	GO:0051259		3.063E-07	1.761E-04
deoxyribonucleotide metabolic process	GO:0009262		8.282E-07	3.81E-04
electron transport chain	GO:0022900		1.358E-06	5.204E-04
response to hydrogen peroxide	GO:0042542		2.265E-06	7.443E-04
response to reactive oxygen species	GO:0000302		4.409E-06	1.268E-03
protein thiol-disulfide exchange	GO:0006467		7.841E-06	2.004E-03
regulation of translational initiation	GO:0006446		8.719E-06	2.005E-03
response to temperature stimulus	GO:0009266		1.061E-05	2.218E-03

Wang file

Name	Accession Number	Link	P-val	Corrected P-val
deoxyribonucleotide biosynthetic process	GO:0009263		1.256E-08	2.888E-05
nucleoside diphosphate metabolic process	GO:0009132		2.197E-08	2.526E-05
cell redox homeostasis	GO:0045454		7.46E-08	5.719E-05
protein oligomerization	GO:0051259		3.063E-07	1.761E-04
deoxyribonucleotide metabolic process	GO:0009262		8.282E-07	3.81E-04
electron transport chain	GO:0022900		1.358E-06	5.204E-04
response to hydrogen peroxide	GO:0042542		2.265E-06	7.443E-04
response to reactive oxygen species	GO:0000302		4.409E-06	1.268E-03
protein thiol-disulfide exchange	GO:0006467		7.841E-06	2.004E-03
regulation of translational initiation	GO:0006446		8.719E-06	2.005E-03
response to temperature stimulus	GO:0009266		1.061E-05	2.218E-03

Zhang file

Name	Accession Number	Link	P-val	Corrected P-val
deoxyribonucleotide biosynthetic process	GO:0009263		1.256E-08	2.888E-05
nucleoside diphosphate metabolic process	GO:0009132		2.197E-08	2.526E-05
cell redox homeostasis	GO:0045454		7.46E-08	5.719E-05
protein oligomerization	GO:0051259		3.063E-07	1.761E-04
deoxyribonucleotide metabolic process	GO:0009262		8.282E-07	3.81E-04
electron transport chain	GO:0022900		1.358E-06	5.204E-04
response to hydrogen peroxide	GO:0042542		2.265E-06	7.443E-04
response to reactive oxygen species	GO:0000302		4.409E-06	1.268E-03
protein thiol-disulfide exchange	GO:0006467		7.841E-06	2.004E-03
regulation of translational initiation	GO:0006446		8.719E-06	2.005E-03
response to temperature stimulus	GO:0009266		1.061E-05	2.218E-03

Zhou file

Name	Accession Number	Link	P-val	Corrected P-val
deoxyribonucleotide biosynthetic process	GO:0009263		1.492E-08	3.541E-05
nucleoside diphosphate metabolic process	GO:0009132		2.386E-08	2.832E-05
cell redox homeostasis	GO:0045454		6.291E-08	4.976E-05
protein oligomerization	GO:0051259		1.953E-07	1.159E-04
deoxyribonucleotide metabolic process	GO:0009262		6.518E-07	3.093E-04
electron transport chain	GO:0022900		1.004E-06	3.971E-04
response to hydrogen peroxide	GO:0042542		1.894E-06	6.421E-04
response to reactive oxygen species	GO:0000302		3.836E-06	1.138E-03
protein thiol-disulfide exchange	GO:0006467		6.06E-06	1.598E-03
regulation of translational initiation	GO:0006446		6.35E-06	1.507E-03
response to temperature stimulus	GO:0009266		7.695E-06	1.66E-03