Study run-a1
Study informations
119 subnetworks in total page | file
406 genes associated page | file
Enriched GO terms page
General informations
General Index page
Study Index page
Subnetwork 4931-5-real
score
| Dataset | Score | P-val 1 | P-val 2 | P-val 3 |
|---|
| Desmedt | 0.1823 | 9.843e-03 | 1.176e-02 | 9.792e-02 |
|---|
| IPC-NIBC-129 | 0.2806 | 2.579e-02 | 3.131e-02 | 2.784e-01 |
|---|
| Ivshina_GPL96-GPL97 | 0.2491 | 6.088e-02 | 7.824e-02 | 6.483e-01 |
|---|
| Loi_GPL570 | 0.1571 | 4.036e-02 | 4.004e-02 | 2.171e-01 |
|---|
| Loi_GPL96-GPL97 | 0.1571 | 2.800e-05 | 1.610e-04 | 3.560e-04 |
|---|
| Parker_GPL1390 | 0.3060 | 1.255e-01 | 1.275e-01 | 6.012e-01 |
|---|
| Parker_GPL887 | 0.0502 | 8.397e-01 | 8.556e-01 | 8.904e-01 |
|---|
| Pawitan_GPL96-GPL97 | 0.3945 | 2.945e-01 | 2.551e-01 | 8.603e-01 |
|---|
| Schmidt | 0.2243 | 2.330e-02 | 3.203e-02 | 2.437e-01 |
|---|
| Sotiriou | 0.2633 | 2.064e-03 | 5.680e-04 | 5.423e-02 |
|---|
| Wang | 0.1902 | 1.160e-01 | 8.182e-02 | 4.023e-01 |
|---|
| Zhang | 0.1626 | 9.047e-02 | 5.810e-02 | 2.198e-01 |
|---|
| Zhou | 0.4244 | 4.405e-02 | 4.509e-02 | 2.822e-01 |
|---|
Expression data for subnetwork 4931-5-real in each dataset
Desmedt |
IPC-NIBC-129 |
Ivshina_GPL96-GPL97 |
Loi_GPL570 |
Loi_GPL96-GPL97 |
Parker_GPL1390 |
Parker_GPL887 |
Pawitan_GPL96-GPL97 |
Schmidt |
Sotiriou |
Wang |
Zhang |
Zhou |
Subnetwork structure for each dataset
- Desmedt
Score for each gene in subnetwork 4931-5-real in each dataset
| Gene Symbol | Links | Frequency | Frequency Rank | Subnetwork score rank | Global rank |
Desmedt | IPC-NIBC-129 | Ivshina_GPL96-GPL97 | Loi_GPL570 | Loi_GPL96-GPL97 | Parker_GPL1390 | Parker_GPL887 | Pawitan_GPL96-GPL97 | Schmidt | Sotiriou | Wang | Zhang | Zhou |
|---|
| pfn1 |   | 2 | 104 | 78 | 83 | 0.107 | 0.097 | 0.121 | -0.002 | 0.068 | 0.134 | 0.079 | 0.183 | -0.002 | -0.018 | -0.009 | -0.082 | 0.256 |
|---|
| ccnb2 | | 16 | 13 | 153 | 125 | 0.164 | 0.176 | 0.204 | 0.123 | 0.172 | 0.178 | 0.090 | 0.366 | 0.240 | 0.169 | 0.144 | 0.211 | 0.463 |
|---|
| crmp1 | | 2 | 104 | 1 | 18 | 0.065 | 0.155 | -0.056 | 0.060 | 0.087 | 0.134 | -0.257 | 0.009 | 0.138 | 0.086 | -0.043 | 0.030 | 0.098 |
|---|
| nvl | | 1 | 164 | 383 | 383 | -0.054 | 0.159 | 0.176 | 0.009 | 0.117 | 0.042 | 0.149 | 0.103 | 0.063 | 0.118 | 0.174 | -0.018 | 0.217 |
|---|
| cdkn1a | | 70 | 3 | 73 | 51 | 0.115 | -0.020 | 0.065 | 0.082 | 0.099 | 0.124 | 0.055 | 0.087 | 0.068 | 0.144 | 0.015 | -0.201 | 0.069 |
|---|
| ccnd1 | | 102 | 2 | 1 | 2 | 0.127 | -0.183 | 0.062 | 0.190 | 0.157 | -0.002 | -0.190 | 0.105 | -0.107 | 0.174 | 0.106 | 0.144 | 0.290 |
|---|
| cks2 | | 44 | 6 | 73 | 54 | 0.050 | 0.233 | 0.170 | 0.103 | 0.186 | 0.172 | 0.093 | 0.167 | 0.263 | 0.151 | 0.145 | 0.284 | 0.383 |
|---|
| pfkp | | 1 | 164 | 383 | 383 | 0.086 | 0.311 | 0.084 | -0.091 | 0.076 | 0.195 | -0.019 | 0.261 | 0.069 | 0.065 | 0.048 | -0.022 | 0.343 |
|---|
| ndufa4l2 | | 1 | 164 | 383 | 383 | 0.039 | 0.271 | 0.157 | 0.052 | 0.136 | -0.099 | 0.072 | 0.281 | 0.142 | 0.177 | 0.108 | 0.139 | -0.139 |
|---|
| cdc2 | | 103 | 1 | 1 | 1 | 0.073 | 0.247 | 0.206 | 0.172 | 0.247 | 0.153 | -0.131 | 0.282 | 0.226 | 0.221 | 0.067 | 0.297 | 0.336 |
|---|
| dnm2 | | 6 | 43 | 93 | 81 | 0.089 | 0.127 | 0.114 | -0.049 | 0.065 | 0.251 | 0.291 | 0.177 | -0.039 | -0.048 | -0.099 | -0.044 | 0.262 |
|---|
| mdh2 | | 1 | 164 | 383 | 383 | 0.139 | 0.243 | 0.029 | -0.050 | 0.095 | 0.157 | 0.218 | 0.310 | 0.122 | 0.107 | 0.007 | -0.078 | 0.130 |
|---|
| dynll1 | | 5 | 50 | 93 | 82 | -0.012 | 0.108 | 0.088 | 0.087 | 0.098 | 0.124 | 0.134 | 0.128 | 0.113 | 0.093 | 0.158 | 0.074 | 0.360 |
|---|
GO Enrichment output for subnetwork 4931-5-real in each dataset
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 |  | 1.907E-07 | 4.387E-04 |
|---|
| G2/M transition of mitotic cell cycle | GO:0000086 | | 1.205E-06 | 1.386E-03 |
|---|
| interphase of mitotic cell cycle | GO:0051329 | | 1.585E-06 | 1.215E-03 |
|---|
| negative regulation of phosphorylation | GO:0042326 | | 1.602E-06 | 9.214E-04 |
|---|
| interphase | GO:0051325 | | 1.738E-06 | 7.994E-04 |
|---|
| negative regulation of phosphorus metabolic process | GO:0010563 | | 2.078E-06 | 7.967E-04 |
|---|
| malate metabolic process | GO:0006108 | | 9.995E-06 | 3.284E-03 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 1.102E-05 | 3.169E-03 |
|---|
| glycolysis | GO:0006096 | | 1.182E-05 | 3.021E-03 |
|---|
| response to UV | GO:0009411 | | 1.353E-05 | 3.113E-03 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 2.096E-05 | 4.383E-03 |
|---|
IPC-NIBC-129 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 2.824E-08 | 6.898E-05 |
|---|
| interphase of mitotic cell cycle | GO:0051329 | | 2.544E-07 | 3.108E-04 |
|---|
| negative regulation of phosphorylation | GO:0042326 | | 3.06E-07 | 2.492E-04 |
|---|
| G2/M transition of mitotic cell cycle | GO:0000086 | | 3.476E-07 | 2.123E-04 |
|---|
| negative regulation of phosphorus metabolic process | GO:0010563 | | 3.928E-07 | 1.919E-04 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 2.277E-06 | 9.271E-04 |
|---|
| glycolysis | GO:0006096 | | 2.277E-06 | 7.947E-04 |
|---|
| response to UV | GO:0009411 | | 3.923E-06 | 1.198E-03 |
|---|
| glucose catabolic process | GO:0006007 | | 4.143E-06 | 1.125E-03 |
|---|
| malate metabolic process | GO:0006108 | | 4.506E-06 | 1.101E-03 |
|---|
| hexose catabolic process | GO:0019320 | | 7.458E-06 | 1.656E-03 |
|---|
Ivshina_GPL96-GPL97 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 4.374E-08 | 1.052E-04 |
|---|
| interphase of mitotic cell cycle | GO:0051329 | | 3.472E-07 | 4.177E-04 |
|---|
| interphase | GO:0051325 | | 3.935E-07 | 3.156E-04 |
|---|
| negative regulation of phosphorylation | GO:0042326 | | 4.272E-07 | 2.57E-04 |
|---|
| G2/M transition of mitotic cell cycle | GO:0000086 | | 4.853E-07 | 2.335E-04 |
|---|
| negative regulation of phosphorus metabolic process | GO:0010563 | | 5.484E-07 | 2.199E-04 |
|---|
| glycolysis | GO:0006096 | | 2.97E-06 | 1.021E-03 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 3.176E-06 | 9.553E-04 |
|---|
| response to UV | GO:0009411 | | 4.888E-06 | 1.307E-03 |
|---|
| glucose catabolic process | GO:0006007 | | 5.47E-06 | 1.316E-03 |
|---|
| malate metabolic process | GO:0006108 | | 5.647E-06 | 1.235E-03 |
|---|
Loi_GPL570 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 2.824E-08 | 6.898E-05 |
|---|
| interphase of mitotic cell cycle | GO:0051329 | | 2.544E-07 | 3.108E-04 |
|---|
| negative regulation of phosphorylation | GO:0042326 | | 3.06E-07 | 2.492E-04 |
|---|
| G2/M transition of mitotic cell cycle | GO:0000086 | | 3.476E-07 | 2.123E-04 |
|---|
| negative regulation of phosphorus metabolic process | GO:0010563 | | 3.928E-07 | 1.919E-04 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 2.277E-06 | 9.271E-04 |
|---|
| glycolysis | GO:0006096 | | 2.277E-06 | 7.947E-04 |
|---|
| response to UV | GO:0009411 | | 3.923E-06 | 1.198E-03 |
|---|
| glucose catabolic process | GO:0006007 | | 4.143E-06 | 1.125E-03 |
|---|
| malate metabolic process | GO:0006108 | | 4.506E-06 | 1.101E-03 |
|---|
| hexose catabolic process | GO:0019320 | | 7.458E-06 | 1.656E-03 |
|---|
Loi_GPL96-GPL97 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 4.374E-08 | 1.052E-04 |
|---|
| interphase of mitotic cell cycle | GO:0051329 | | 3.472E-07 | 4.177E-04 |
|---|
| interphase | GO:0051325 | | 3.935E-07 | 3.156E-04 |
|---|
| negative regulation of phosphorylation | GO:0042326 | | 4.272E-07 | 2.57E-04 |
|---|
| G2/M transition of mitotic cell cycle | GO:0000086 | | 4.853E-07 | 2.335E-04 |
|---|
| negative regulation of phosphorus metabolic process | GO:0010563 | | 5.484E-07 | 2.199E-04 |
|---|
| glycolysis | GO:0006096 | | 2.97E-06 | 1.021E-03 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 3.176E-06 | 9.553E-04 |
|---|
| response to UV | GO:0009411 | | 4.888E-06 | 1.307E-03 |
|---|
| glucose catabolic process | GO:0006007 | | 5.47E-06 | 1.316E-03 |
|---|
| malate metabolic process | GO:0006108 | | 5.647E-06 | 1.235E-03 |
|---|
Parker_GPL1390 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| cyclin-dependent protein kinase regulator activity | GO:0016538 | | 8.297E-11 | 2.963E-07 |
|---|
| cyclin-dependent protein kinase holoenzyme complex | GO:0000307 | | 2.306E-08 | 4.118E-05 |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 5.693E-08 | 6.776E-05 |
|---|
| protein kinase regulator activity | GO:0019887 | | 1.561E-07 | 1.394E-04 |
|---|
| G2/M transition of mitotic cell cycle | GO:0000086 | | 2.789E-07 | 1.992E-04 |
|---|
| kinase regulator activity | GO:0019207 | | 3.306E-07 | 1.968E-04 |
|---|
| interphase of mitotic cell cycle | GO:0051329 | | 4.264E-07 | 2.175E-04 |
|---|
| negative regulation of phosphorylation | GO:0042326 | | 6.301E-07 | 2.813E-04 |
|---|
| negative regulation of phosphorus metabolic process | GO:0010563 | | 7.243E-07 | 2.874E-04 |
|---|
| glycolysis | GO:0006096 | | 4.655E-06 | 1.662E-03 |
|---|
| cytoplasmic dynein complex | GO:0005868 | | 6.073E-06 | 1.971E-03 |
|---|
Parker_GPL887 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| cyclin-dependent protein kinase regulator activity | GO:0016538 | | 1.95E-10 | 7.115E-07 |
|---|
| cyclin-dependent protein kinase holoenzyme complex | GO:0000307 | | 1.861E-08 | 3.394E-05 |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 4.793E-08 | 5.828E-05 |
|---|
| protein kinase regulator activity | GO:0019887 | | 1.373E-07 | 1.253E-04 |
|---|
| G2/M transition of mitotic cell cycle | GO:0000086 | | 1.854E-07 | 1.353E-04 |
|---|
| kinase regulator activity | GO:0019207 | | 2.434E-07 | 1.48E-04 |
|---|
| interphase of mitotic cell cycle | GO:0051329 | | 3.15E-07 | 1.642E-04 |
|---|
| interphase | GO:0051325 | | 3.476E-07 | 1.585E-04 |
|---|
| negative regulation of phosphorylation | GO:0042326 | | 1.079E-06 | 4.373E-04 |
|---|
| negative regulation of phosphorus metabolic process | GO:0010563 | | 1.478E-06 | 5.393E-04 |
|---|
| glycolysis | GO:0006096 | | 3.49E-06 | 1.158E-03 |
|---|
Pawitan_GPL96-GPL97 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 4.374E-08 | 1.052E-04 |
|---|
| interphase of mitotic cell cycle | GO:0051329 | | 3.472E-07 | 4.177E-04 |
|---|
| interphase | GO:0051325 | | 3.935E-07 | 3.156E-04 |
|---|
| negative regulation of phosphorylation | GO:0042326 | | 4.272E-07 | 2.57E-04 |
|---|
| G2/M transition of mitotic cell cycle | GO:0000086 | | 4.853E-07 | 2.335E-04 |
|---|
| negative regulation of phosphorus metabolic process | GO:0010563 | | 5.484E-07 | 2.199E-04 |
|---|
| glycolysis | GO:0006096 | | 2.97E-06 | 1.021E-03 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 3.176E-06 | 9.553E-04 |
|---|
| response to UV | GO:0009411 | | 4.888E-06 | 1.307E-03 |
|---|
| glucose catabolic process | GO:0006007 | | 5.47E-06 | 1.316E-03 |
|---|
| malate metabolic process | GO:0006108 | | 5.647E-06 | 1.235E-03 |
|---|
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 1.907E-07 | 4.387E-04 |
|---|
| G2/M transition of mitotic cell cycle | GO:0000086 | | 1.205E-06 | 1.386E-03 |
|---|
| interphase of mitotic cell cycle | GO:0051329 | | 1.585E-06 | 1.215E-03 |
|---|
| negative regulation of phosphorylation | GO:0042326 | | 1.602E-06 | 9.214E-04 |
|---|
| interphase | GO:0051325 | | 1.738E-06 | 7.994E-04 |
|---|
| negative regulation of phosphorus metabolic process | GO:0010563 | | 2.078E-06 | 7.967E-04 |
|---|
| malate metabolic process | GO:0006108 | | 9.995E-06 | 3.284E-03 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 1.102E-05 | 3.169E-03 |
|---|
| glycolysis | GO:0006096 | | 1.182E-05 | 3.021E-03 |
|---|
| response to UV | GO:0009411 | | 1.353E-05 | 3.113E-03 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 2.096E-05 | 4.383E-03 |
|---|
Sotiriou file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 1.907E-07 | 4.387E-04 |
|---|
| G2/M transition of mitotic cell cycle | GO:0000086 | | 1.205E-06 | 1.386E-03 |
|---|
| interphase of mitotic cell cycle | GO:0051329 | | 1.585E-06 | 1.215E-03 |
|---|
| negative regulation of phosphorylation | GO:0042326 | | 1.602E-06 | 9.214E-04 |
|---|
| interphase | GO:0051325 | | 1.738E-06 | 7.994E-04 |
|---|
| negative regulation of phosphorus metabolic process | GO:0010563 | | 2.078E-06 | 7.967E-04 |
|---|
| malate metabolic process | GO:0006108 | | 9.995E-06 | 3.284E-03 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 1.102E-05 | 3.169E-03 |
|---|
| glycolysis | GO:0006096 | | 1.182E-05 | 3.021E-03 |
|---|
| response to UV | GO:0009411 | | 1.353E-05 | 3.113E-03 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 2.096E-05 | 4.383E-03 |
|---|
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 1.907E-07 | 4.387E-04 |
|---|
| G2/M transition of mitotic cell cycle | GO:0000086 | | 1.205E-06 | 1.386E-03 |
|---|
| interphase of mitotic cell cycle | GO:0051329 | | 1.585E-06 | 1.215E-03 |
|---|
| negative regulation of phosphorylation | GO:0042326 | | 1.602E-06 | 9.214E-04 |
|---|
| interphase | GO:0051325 | | 1.738E-06 | 7.994E-04 |
|---|
| negative regulation of phosphorus metabolic process | GO:0010563 | | 2.078E-06 | 7.967E-04 |
|---|
| malate metabolic process | GO:0006108 | | 9.995E-06 | 3.284E-03 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 1.102E-05 | 3.169E-03 |
|---|
| glycolysis | GO:0006096 | | 1.182E-05 | 3.021E-03 |
|---|
| response to UV | GO:0009411 | | 1.353E-05 | 3.113E-03 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 2.096E-05 | 4.383E-03 |
|---|
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 1.907E-07 | 4.387E-04 |
|---|
| G2/M transition of mitotic cell cycle | GO:0000086 | | 1.205E-06 | 1.386E-03 |
|---|
| interphase of mitotic cell cycle | GO:0051329 | | 1.585E-06 | 1.215E-03 |
|---|
| negative regulation of phosphorylation | GO:0042326 | | 1.602E-06 | 9.214E-04 |
|---|
| interphase | GO:0051325 | | 1.738E-06 | 7.994E-04 |
|---|
| negative regulation of phosphorus metabolic process | GO:0010563 | | 2.078E-06 | 7.967E-04 |
|---|
| malate metabolic process | GO:0006108 | | 9.995E-06 | 3.284E-03 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 1.102E-05 | 3.169E-03 |
|---|
| glycolysis | GO:0006096 | | 1.182E-05 | 3.021E-03 |
|---|
| response to UV | GO:0009411 | | 1.353E-05 | 3.113E-03 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 2.096E-05 | 4.383E-03 |
|---|
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 7.987E-08 | 1.895E-04 |
|---|
| G2/M transition of mitotic cell cycle | GO:0000086 | | 5.632E-07 | 6.682E-04 |
|---|
| interphase of mitotic cell cycle | GO:0051329 | | 5.972E-07 | 4.724E-04 |
|---|
| interphase | GO:0051325 | | 6.545E-07 | 3.883E-04 |
|---|
| negative regulation of phosphorylation | GO:0042326 | | 9.72E-07 | 4.613E-04 |
|---|
| negative regulation of phosphorus metabolic process | GO:0010563 | | 1.235E-06 | 4.884E-04 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 5.545E-06 | 1.88E-03 |
|---|
| malate metabolic process | GO:0006108 | | 6.06E-06 | 1.797E-03 |
|---|
| response to UV | GO:0009411 | | 6.779E-06 | 1.787E-03 |
|---|
| glycolysis | GO:0006096 | | 7.695E-06 | 1.826E-03 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 1.271E-05 | 2.743E-03 |
|---|
