Study run-a1

Study informations

119 subnetworks in total page | file

406 genes associated page | file

Enriched GO terms page

General informations

General Index page

Study Index page

Subnetwork 387-4-real

score

Dataset	Score	P-val 1	P-val 2	P-val 3
Desmedt	0.1892	1.058e-02	1.266e-02	1.034e-01
IPC-NIBC-129	0.2991	3.164e-02	3.902e-02	3.266e-01
Ivshina_GPL96-GPL97	0.2455	9.358e-02	1.153e-01	7.529e-01
Loi_GPL570	0.1361	3.124e-02	3.097e-02	1.782e-01
Loi_GPL96-GPL97	0.1380	0.000e+00	1.000e-06	0.000e+00
Parker_GPL1390	0.2913	1.142e-01	1.151e-01	5.759e-01
Parker_GPL887	0.3647	1.194e-01	1.427e-01	1.032e-01
Pawitan_GPL96-GPL97	0.3242	5.622e-02	3.746e-02	3.540e-01
Schmidt	0.3004	2.918e-03	4.385e-03	4.786e-02
Sotiriou	0.3898	1.961e-03	5.320e-04	5.222e-02
Wang	0.2473	1.573e-01	1.167e-01	4.856e-01
Zhang	0.3266	3.943e-02	2.148e-02	1.013e-01
Zhou	0.4275	8.611e-02	9.390e-02	4.960e-01

Expression data for subnetwork 387-4-real in each dataset

Desmedt | IPC-NIBC-129 | Ivshina_GPL96-GPL97 | Loi_GPL570 | Loi_GPL96-GPL97 | Parker_GPL1390 | Parker_GPL887 | Pawitan_GPL96-GPL97 | Schmidt | Sotiriou | Wang | Zhang | Zhou |

Subnetwork structure for each dataset

Desmedt IPC-NIBC-129 Ivshina_GPL96-GPL97 Loi_GPL570 Loi_GPL96-GPL97 Parker_GPL1390 Parker_GPL887 Pawitan_GPL96-GPL97 Schmidt Sotiriou Wang Zhang Zhou

Desmedt

Score for each gene in subnetwork 387-4-real in each dataset

Gene Symbol	Links	Frequency	Frequency Rank	Subnetwork score rank	Global rank	Desmedt	IPC-NIBC-129	Ivshina_GPL96-GPL97	Loi_GPL570	Loi_GPL96-GPL97	Parker_GPL1390	Parker_GPL887	Pawitan_GPL96-GPL97	Schmidt	Sotiriou	Wang	Zhang	Zhou
crmp1		2	104	1	18	0.065	0.155	-0.056	0.060	0.087	0.134	-0.257	0.009	0.138	0.086	-0.043	0.030	0.098
stmn2		29	8	1	3	0.057	0.106	0.005	0.052	0.110	0.071	-0.099	0.006	0.034	0.103	0.075	0.113	-0.039
rhoa		1	164	1	31	0.080	0.054	0.083	-0.107	0.073	0.065	-0.190	0.138	-0.177	0.077	-0.026	-0.032	0.160
bat2		1	164	1	31	0.039	0.182	-0.001	-0.013	0.062	undef	-0.335	0.109	0.186	0.099	-0.078	0.059	0.146
luc7l3		7	38	1	5	0.006	0.111	-0.046	-0.016	0.121	0.071	-0.318	-0.084	0.159	0.098	0.155	0.067	0.065
ccnd1		102	2	1	2	0.127	-0.183	0.062	0.190	0.157	-0.002	-0.190	0.105	-0.107	0.174	0.106	0.144	0.290
pkn1		1	164	1	31	-0.031	0.056	0.096	0.119	0.098	0.233	-0.317	-0.037	-0.013	0.127	-0.006	0.168	0.245
hnrnpa1		4	60	1	9	-0.021	0.209	0.088	-0.020	0.087	0.131	undef	0.082	0.036	0.089	0.077	0.083	0.195
sf3b3		7	38	1	5	0.119	0.241	0.143	-0.019	0.082	0.222	0.007	0.271	0.168	0.060	0.017	-0.077	0.372
tk1		6	43	1	7	0.109	0.149	0.190	-0.017	0.131	0.105	-0.100	0.257	0.204	0.142	0.064	0.164	0.222
cdc2		103	1	1	1	0.073	0.247	0.206	0.172	0.247	0.153	-0.131	0.282	0.226	0.221	0.067	0.297	0.336
snrpg		1	164	1	31	-0.068	0.217	0.120	0.108	0.092	0.134	-0.077	0.265	0.253	0.069	0.112	0.291	0.174
ptk2		1	164	1	31	0.035	0.139	-0.059	0.033	0.130	-0.066	-0.055	0.070	0.150	0.131	0.116	0.073	0.196
actn1		4	60	1	9	0.100	0.223	0.031	-0.052	0.053	0.156	0.031	0.019	0.024	0.027	0.124	-0.008	0.241
hnrnpc		1	164	1	31	-0.110	0.101	0.116	0.114	0.102	0.147	0.000	0.106	0.159	0.100	0.173	0.037	0.334
grb2		9	27	1	4	0.084	-0.013	0.086	-0.031	0.162	-0.038	0.003	0.065	0.158	0.127	-0.097	0.194	-0.005

GO Enrichment output for subnetwork 387-4-real in each dataset

Desmedt file

Name	Accession Number	Link	P-val	Corrected P-val
actin filament bundle formation	GO:0051017		2.465E-06	5.669E-03
hyperosmotic response	GO:0006972		3.696E-05	0.04250404
positive regulation of cyclin-dependent protein kinase activity	GO:0045737		5.169E-05	0.03963112
positive regulation of NF-kappaB import into nucleus	GO:0042346		5.169E-05	0.02972334
positive regulation of transcription factor import into nucleus	GO:0042993		1.104E-04	0.05080294
actin filament organization	GO:0007015		1.126E-04	0.04318098
cell-matrix adhesion	GO:0007160		1.244E-04	0.04088774
focal adhesion formation	GO:0048041		1.348E-04	0.03876934
cell-substrate adhesion	GO:0031589		1.574E-04	0.0402185
positive regulation of protein import into nucleus	GO:0042307		1.909E-04	0.04389846
regulation of NF-kappaB import into nucleus	GO:0042345		1.909E-04	0.03990769

IPC-NIBC-129 file

Name	Accession Number	Link	P-val	Corrected P-val
actin filament bundle formation	GO:0051017		1.853E-06	4.527E-03
hyperosmotic response	GO:0006972		2.138E-05	0.02611234
positive regulation of cyclin-dependent protein kinase activity	GO:0045737		3.984E-05	0.03244541
positive regulation of NF-kappaB import into nucleus	GO:0042346		3.984E-05	0.02433406
actin filament organization	GO:0007015		9.279E-05	0.04533721
positive regulation of transcription factor import into nucleus	GO:0042993		9.363E-05	0.0381218
focal adhesion formation	GO:0048041		9.363E-05	0.03267583
cell-matrix adhesion	GO:0007160		1.09E-04	0.0332881
cell-substrate adhesion	GO:0031589		1.366E-04	0.0370872
regulation of NF-kappaB import into nucleus	GO:0042345		1.486E-04	0.03630517
response to osmotic stress	GO:0006970		1.697E-04	0.03769068

Ivshina_GPL96-GPL97 file

Name	Accession Number	Link	P-val	Corrected P-val
actin filament bundle formation	GO:0051017		2.072E-06	4.986E-03
hyperosmotic response	GO:0006972		2.571E-05	0.03093219
positive regulation of cyclin-dependent protein kinase activity	GO:0045737		4.792E-05	0.03842868
positive regulation of NF-kappaB import into nucleus	GO:0042346		4.792E-05	0.02882151
actin filament organization	GO:0007015		9.371E-05	0.0450953
positive regulation of transcription factor import into nucleus	GO:0042993		1.126E-04	0.04513883
focal adhesion formation	GO:0048041		1.126E-04	0.03869043
cell-matrix adhesion	GO:0007160		1.371E-04	0.04124725
cell-substrate adhesion	GO:0031589		1.723E-04	0.04607155
regulation of NF-kappaB import into nucleus	GO:0042345		1.786E-04	0.04297852
response to osmotic stress	GO:0006970		2.04E-04	0.04461548

Loi_GPL570 file

Name	Accession Number	Link	P-val	Corrected P-val
actin filament bundle formation	GO:0051017		1.853E-06	4.527E-03
hyperosmotic response	GO:0006972		2.138E-05	0.02611234
positive regulation of cyclin-dependent protein kinase activity	GO:0045737		3.984E-05	0.03244541
positive regulation of NF-kappaB import into nucleus	GO:0042346		3.984E-05	0.02433406
actin filament organization	GO:0007015		9.279E-05	0.04533721
positive regulation of transcription factor import into nucleus	GO:0042993		9.363E-05	0.0381218
focal adhesion formation	GO:0048041		9.363E-05	0.03267583
cell-matrix adhesion	GO:0007160		1.09E-04	0.0332881
cell-substrate adhesion	GO:0031589		1.366E-04	0.0370872
regulation of NF-kappaB import into nucleus	GO:0042345		1.486E-04	0.03630517
response to osmotic stress	GO:0006970		1.697E-04	0.03769068

Loi_GPL96-GPL97 file

Name	Accession Number	Link	P-val	Corrected P-val
actin filament bundle formation	GO:0051017		2.072E-06	4.986E-03
hyperosmotic response	GO:0006972		2.571E-05	0.03093219
positive regulation of cyclin-dependent protein kinase activity	GO:0045737		4.792E-05	0.03842868
positive regulation of NF-kappaB import into nucleus	GO:0042346		4.792E-05	0.02882151
actin filament organization	GO:0007015		9.371E-05	0.0450953
positive regulation of transcription factor import into nucleus	GO:0042993		1.126E-04	0.04513883
focal adhesion formation	GO:0048041		1.126E-04	0.03869043
cell-matrix adhesion	GO:0007160		1.371E-04	0.04124725
cell-substrate adhesion	GO:0031589		1.723E-04	0.04607155
regulation of NF-kappaB import into nucleus	GO:0042345		1.786E-04	0.04297852
response to osmotic stress	GO:0006970		2.04E-04	0.04461548

Parker_GPL1390 file

Name	Accession Number	Link	P-val	Corrected P-val
actin filament bundle formation	GO:0051017		3.856E-07	1.377E-03
small nuclear ribonucleoprotein complex	GO:0030532		1.937E-06	3.459E-03
nucleobase. nucleoside. nucleotide kinase activity	GO:0019205		1.103E-05	0.01312478
positive regulation of cyclin-dependent protein kinase activity	GO:0045737		1.448E-05	0.01292428
insulin receptor substrate binding	GO:0043560		1.448E-05	0.01033942
vinculin binding	GO:0017166		1.448E-05	8.616E-03
superoxide-generating NADPH oxidase activity	GO:0016175		1.448E-05	7.385E-03
hyperosmotic response	GO:0006972		1.448E-05	6.462E-03
response to pH	GO:0009268		2.026E-05	8.037E-03
hydrolase activity. acting on carbon-nitrogen (but not peptide) bonds. in cyclic amides	GO:0016812		2.026E-05	7.233E-03
positive regulation of NF-kappaB import into nucleus	GO:0042346		2.026E-05	6.576E-03

Parker_GPL887 file

Name	Accession Number	Link	P-val	Corrected P-val
small nuclear ribonucleoprotein complex	GO:0030532		1.492E-06	5.442E-03
RNA polymerase II carboxy-terminal domain kinase activity	GO:0008353		8.717E-06	0.01590066
epidermal growth factor receptor binding	GO:0005154		8.717E-06	0.01060044
positive regulation of cyclin-dependent protein kinase activity	GO:0045737		1.307E-05	0.0119187
insulin receptor substrate binding	GO:0043560		1.829E-05	0.01334134
vinculin binding	GO:0017166		1.829E-05	0.01111778
hydrolase activity. acting on carbon-nitrogen (but not peptide) bonds. in cyclic amides	GO:0016812		1.829E-05	9.53E-03
positive regulation of NF-kappaB import into nucleus	GO:0042346		1.829E-05	8.338E-03
cyclin-dependent protein kinase holoenzyme complex	GO:0000307		2.437E-05	9.877E-03
focal adhesion	GO:0005925		2.725E-05	9.939E-03
cell-substrate adherens junction	GO:0005924		3.289E-05	0.01090662

Pawitan_GPL96-GPL97 file

Name	Accession Number	Link	P-val	Corrected P-val
actin filament bundle formation	GO:0051017		2.072E-06	4.986E-03
hyperosmotic response	GO:0006972		2.571E-05	0.03093219
positive regulation of cyclin-dependent protein kinase activity	GO:0045737		4.792E-05	0.03842868
positive regulation of NF-kappaB import into nucleus	GO:0042346		4.792E-05	0.02882151
actin filament organization	GO:0007015		9.371E-05	0.0450953
positive regulation of transcription factor import into nucleus	GO:0042993		1.126E-04	0.04513883
focal adhesion formation	GO:0048041		1.126E-04	0.03869043
cell-matrix adhesion	GO:0007160		1.371E-04	0.04124725
cell-substrate adhesion	GO:0031589		1.723E-04	0.04607155
regulation of NF-kappaB import into nucleus	GO:0042345		1.786E-04	0.04297852
response to osmotic stress	GO:0006970		2.04E-04	0.04461548

Schmidt file

Name	Accession Number	Link	P-val	Corrected P-val
actin filament bundle formation	GO:0051017		2.465E-06	5.669E-03
hyperosmotic response	GO:0006972		3.696E-05	0.04250404
positive regulation of cyclin-dependent protein kinase activity	GO:0045737		5.169E-05	0.03963112
positive regulation of NF-kappaB import into nucleus	GO:0042346		5.169E-05	0.02972334
positive regulation of transcription factor import into nucleus	GO:0042993		1.104E-04	0.05080294
actin filament organization	GO:0007015		1.126E-04	0.04318098
cell-matrix adhesion	GO:0007160		1.244E-04	0.04088774
focal adhesion formation	GO:0048041		1.348E-04	0.03876934
cell-substrate adhesion	GO:0031589		1.574E-04	0.0402185
positive regulation of protein import into nucleus	GO:0042307		1.909E-04	0.04389846
regulation of NF-kappaB import into nucleus	GO:0042345		1.909E-04	0.03990769

Sotiriou file

Name	Accession Number	Link	P-val	Corrected P-val
actin filament bundle formation	GO:0051017		2.465E-06	5.669E-03
hyperosmotic response	GO:0006972		3.696E-05	0.04250404
positive regulation of cyclin-dependent protein kinase activity	GO:0045737		5.169E-05	0.03963112
positive regulation of NF-kappaB import into nucleus	GO:0042346		5.169E-05	0.02972334
positive regulation of transcription factor import into nucleus	GO:0042993		1.104E-04	0.05080294
actin filament organization	GO:0007015		1.126E-04	0.04318098
cell-matrix adhesion	GO:0007160		1.244E-04	0.04088774
focal adhesion formation	GO:0048041		1.348E-04	0.03876934
cell-substrate adhesion	GO:0031589		1.574E-04	0.0402185
positive regulation of protein import into nucleus	GO:0042307		1.909E-04	0.04389846
regulation of NF-kappaB import into nucleus	GO:0042345		1.909E-04	0.03990769

Wang file

Name	Accession Number	Link	P-val	Corrected P-val
actin filament bundle formation	GO:0051017		2.465E-06	5.669E-03
hyperosmotic response	GO:0006972		3.696E-05	0.04250404
positive regulation of cyclin-dependent protein kinase activity	GO:0045737		5.169E-05	0.03963112
positive regulation of NF-kappaB import into nucleus	GO:0042346		5.169E-05	0.02972334
positive regulation of transcription factor import into nucleus	GO:0042993		1.104E-04	0.05080294
actin filament organization	GO:0007015		1.126E-04	0.04318098
cell-matrix adhesion	GO:0007160		1.244E-04	0.04088774
focal adhesion formation	GO:0048041		1.348E-04	0.03876934
cell-substrate adhesion	GO:0031589		1.574E-04	0.0402185
positive regulation of protein import into nucleus	GO:0042307		1.909E-04	0.04389846
regulation of NF-kappaB import into nucleus	GO:0042345		1.909E-04	0.03990769

Zhang file

Name	Accession Number	Link	P-val	Corrected P-val
actin filament bundle formation	GO:0051017		2.465E-06	5.669E-03
hyperosmotic response	GO:0006972		3.696E-05	0.04250404
positive regulation of cyclin-dependent protein kinase activity	GO:0045737		5.169E-05	0.03963112
positive regulation of NF-kappaB import into nucleus	GO:0042346		5.169E-05	0.02972334
positive regulation of transcription factor import into nucleus	GO:0042993		1.104E-04	0.05080294
actin filament organization	GO:0007015		1.126E-04	0.04318098
cell-matrix adhesion	GO:0007160		1.244E-04	0.04088774
focal adhesion formation	GO:0048041		1.348E-04	0.03876934
cell-substrate adhesion	GO:0031589		1.574E-04	0.0402185
positive regulation of protein import into nucleus	GO:0042307		1.909E-04	0.04389846
regulation of NF-kappaB import into nucleus	GO:0042345		1.909E-04	0.03990769

Zhou file

Name	Accession Number	Link	P-val	Corrected P-val
RNA export from nucleus	GO:0006405		5.36E-07	1.272E-03
nuclear export	GO:0051168		2.053E-06	2.436E-03
actin filament bundle formation	GO:0051017		3.037E-06	2.403E-03
nuclear import	GO:0051170		1.28E-05	7.592E-03
regulation of integrin biosynthetic process	GO:0045113		2.501E-05	0.01186774
response to pH	GO:0009268		3.747E-05	0.01481976
hyperosmotic response	GO:0006972		3.747E-05	0.01270265
positive regulation of cyclin-dependent protein kinase activity	GO:0045737		5.241E-05	0.01554511
positive regulation of NF-kappaB import into nucleus	GO:0042346		5.241E-05	0.01381787
positive regulation of transcription factor import into nucleus	GO:0042993		1.12E-04	0.02656847
positive regulation vascular endothelial growth factor production	GO:0010575		1.367E-04	0.02949086