Study run-a1

Study informations

119 subnetworks in total page | file

406 genes associated page | file

Enriched GO terms page

General informations

General Index page

Study Index page

Subnetwork 3251-4-real

score

Dataset	Score	P-val 1	P-val 2	P-val 3
Desmedt	0.1961	1.065e-02	1.273e-02	1.039e-01
IPC-NIBC-129	0.1985	2.850e-02	3.488e-02	3.014e-01
Ivshina_GPL96-GPL97	0.2452	5.775e-03	9.395e-03	1.872e-01
Loi_GPL570	0.2686	1.229e-01	1.222e-01	4.717e-01
Loi_GPL96-GPL97	0.1555	9.000e-06	6.300e-05	7.200e-05
Parker_GPL1390	0.2988	1.037e-01	1.037e-01	5.504e-01
Parker_GPL887	0.2586	2.438e-01	2.758e-01	2.394e-01
Pawitan_GPL96-GPL97	0.3316	7.642e-02	5.352e-02	4.372e-01
Schmidt	0.2398	1.293e-02	1.826e-02	1.590e-01
Sotiriou	0.2995	3.002e-03	9.110e-04	7.108e-02
Wang	0.1841	1.190e-01	8.423e-02	4.087e-01
Zhang	0.2972	9.869e-02	6.447e-02	2.375e-01
Zhou	0.4019	8.029e-02	8.703e-02	4.707e-01

Expression data for subnetwork 3251-4-real in each dataset

Desmedt | IPC-NIBC-129 | Ivshina_GPL96-GPL97 | Loi_GPL570 | Loi_GPL96-GPL97 | Parker_GPL1390 | Parker_GPL887 | Pawitan_GPL96-GPL97 | Schmidt | Sotiriou | Wang | Zhang | Zhou |

Subnetwork structure for each dataset

Desmedt IPC-NIBC-129 Ivshina_GPL96-GPL97 Loi_GPL570 Loi_GPL96-GPL97 Parker_GPL1390 Parker_GPL887 Pawitan_GPL96-GPL97 Schmidt Sotiriou Wang Zhang Zhou

Desmedt

Score for each gene in subnetwork 3251-4-real in each dataset

Gene Symbol	Links	Frequency	Frequency Rank	Subnetwork score rank	Global rank	Desmedt	IPC-NIBC-129	Ivshina_GPL96-GPL97	Loi_GPL570	Loi_GPL96-GPL97	Parker_GPL1390	Parker_GPL887	Pawitan_GPL96-GPL97	Schmidt	Sotiriou	Wang	Zhang	Zhou
cttn		9	27	44	37	0.067	0.065	0.123	0.238	0.126	0.263	-0.172	0.216	0.069	0.115	0.129	0.025	0.279
tubb		8	33	93	80	0.107	0.221	0.070	0.090	0.095	0.278	-0.325	0.185	0.139	0.202	-0.061	-0.142	0.101
hprt1		1	164	93	111	0.022	0.159	0.088	0.172	0.150	0.302	-0.126	0.203	0.112	0.106	0.137	0.179	0.207
ccnd1		102	2	1	2	0.127	-0.183	0.062	0.190	0.157	-0.002	-0.190	0.105	-0.107	0.174	0.106	0.144	0.290
tsc1		47	5	17	8	0.049	0.012	-0.055	0.072	0.055	-0.144	-0.242	-0.196	0.006	0.010	0.043	-0.007	0.207
cdc2		103	1	1	1	0.073	0.247	0.206	0.172	0.247	0.153	-0.131	0.282	0.226	0.221	0.067	0.297	0.336
dync1i1		2	104	93	97	-0.058	0.102	0.055	0.124	0.054	0.147	-0.008	0.056	0.082	0.036	0.119	0.166	-0.245
cblb		2	104	93	97	0.066	0.051	0.077	0.055	0.058	-0.023	-0.391	-0.166	-0.005	0.045	0.089	0.041	0.101
dnm2		6	43	93	81	0.089	0.127	0.114	-0.049	0.065	0.251	0.291	0.177	-0.039	-0.048	-0.099	-0.044	0.262
top2a		11	21	93	76	0.147	0.183	0.185	0.100	0.206	0.014	0.035	0.309	0.261	0.183	0.072	0.234	0.273
grb2		9	27	1	4	0.084	-0.013	0.086	-0.031	0.162	-0.038	0.003	0.065	0.158	0.127	-0.097	0.194	-0.005
dynll1		5	50	93	82	-0.012	0.108	0.088	0.087	0.098	0.124	0.134	0.128	0.113	0.093	0.158	0.074	0.360

GO Enrichment output for subnetwork 3251-4-real in each dataset

Desmedt file

Name	Accession Number	Link	P-val	Corrected P-val
spindle assembly	GO:0051225		7.686E-12	1.768E-08
natural killer cell mediated immunity	GO:0002228		1.931E-10	2.22E-07
leukocyte mediated cytotoxicity	GO:0001909		5.049E-10	3.871E-07
cell killing	GO:0001906		1.528E-09	8.786E-07
spindle organization	GO:0007051		4.131E-08	1.9E-05
lymphocyte mediated immunity	GO:0002449		8.203E-07	3.144E-04
leukocyte mediated immunity	GO:0002443		1.419E-06	4.662E-04
microtubule cytoskeleton organization	GO:0000226		2.789E-06	8.018E-04
negative regulation of protein ubiquitination	GO:0031397		1.371E-05	3.505E-03
positive regulation of viral genome replication	GO:0045070		1.371E-05	3.154E-03
regulation of retroviral genome replication	GO:0045091		1.371E-05	2.867E-03

IPC-NIBC-129 file

Name	Accession Number	Link	P-val	Corrected P-val
spindle assembly	GO:0051225		1.539E-12	3.759E-09
natural killer cell mediated immunity	GO:0002228		6.445E-11	7.873E-08
leukocyte mediated cytotoxicity	GO:0001909		1.518E-10	1.236E-07
cell killing	GO:0001906		4.178E-10	2.552E-07
spindle organization	GO:0007051		1.091E-08	5.329E-06
lymphocyte mediated immunity	GO:0002449		2.017E-07	8.213E-05
leukocyte mediated immunity	GO:0002443		3.602E-07	1.257E-04
negative regulation of protein ubiquitination	GO:0031397		5.975E-06	1.825E-03
positive regulation of viral genome replication	GO:0045070		5.975E-06	1.622E-03
response to insulin stimulus	GO:0032868		6.935E-06	1.694E-03
regulation of retroviral genome replication	GO:0045091		8.959E-06	1.99E-03

Ivshina_GPL96-GPL97 file

Name	Accession Number	Link	P-val	Corrected P-val
spindle assembly	GO:0051225		2.18E-12	5.244E-09
natural killer cell mediated immunity	GO:0002228		9.128E-11	1.098E-07
leukocyte mediated cytotoxicity	GO:0001909		2.149E-10	1.724E-07
cell killing	GO:0001906		5.916E-10	3.559E-07
spindle organization	GO:0007051		1.543E-08	7.426E-06
lymphocyte mediated immunity	GO:0002449		2.676E-07	1.073E-04
leukocyte mediated immunity	GO:0002443		4.818E-07	1.656E-04
negative regulation of protein ubiquitination	GO:0031397		7.155E-06	2.152E-03
positive regulation of viral genome replication	GO:0045070		7.155E-06	1.913E-03
regulation of retroviral genome replication	GO:0045091		7.155E-06	1.722E-03
activation of Ras GTPase activity	GO:0032856		7.155E-06	1.565E-03

Loi_GPL570 file

Name	Accession Number	Link	P-val	Corrected P-val
spindle assembly	GO:0051225		1.539E-12	3.759E-09
natural killer cell mediated immunity	GO:0002228		6.445E-11	7.873E-08
leukocyte mediated cytotoxicity	GO:0001909		1.518E-10	1.236E-07
cell killing	GO:0001906		4.178E-10	2.552E-07
spindle organization	GO:0007051		1.091E-08	5.329E-06
lymphocyte mediated immunity	GO:0002449		2.017E-07	8.213E-05
leukocyte mediated immunity	GO:0002443		3.602E-07	1.257E-04
negative regulation of protein ubiquitination	GO:0031397		5.975E-06	1.825E-03
positive regulation of viral genome replication	GO:0045070		5.975E-06	1.622E-03
response to insulin stimulus	GO:0032868		6.935E-06	1.694E-03
regulation of retroviral genome replication	GO:0045091		8.959E-06	1.99E-03

Loi_GPL96-GPL97 file

Name	Accession Number	Link	P-val	Corrected P-val
spindle assembly	GO:0051225		2.18E-12	5.244E-09
natural killer cell mediated immunity	GO:0002228		9.128E-11	1.098E-07
leukocyte mediated cytotoxicity	GO:0001909		2.149E-10	1.724E-07
cell killing	GO:0001906		5.916E-10	3.559E-07
spindle organization	GO:0007051		1.543E-08	7.426E-06
lymphocyte mediated immunity	GO:0002449		2.676E-07	1.073E-04
leukocyte mediated immunity	GO:0002443		4.818E-07	1.656E-04
negative regulation of protein ubiquitination	GO:0031397		7.155E-06	2.152E-03
positive regulation of viral genome replication	GO:0045070		7.155E-06	1.913E-03
regulation of retroviral genome replication	GO:0045091		7.155E-06	1.722E-03
activation of Ras GTPase activity	GO:0032856		7.155E-06	1.565E-03

Parker_GPL1390 file

Name	Accession Number	Link	P-val	Corrected P-val
cytoplasmic dynein complex	GO:0005868		4.124E-09	1.473E-05
dynein complex	GO:0030286		1.337E-06	2.387E-03
response to insulin stimulus	GO:0032868		4.009E-06	4.773E-03
regulation of retroviral genome replication	GO:0045091		6.073E-06	5.421E-03
spindle assembly	GO:0051225		6.073E-06	4.337E-03
negative regulation of protein ubiquitination	GO:0031397		6.073E-06	3.614E-03
DNA topoisomerase activity	GO:0003916		6.073E-06	3.098E-03
nucleoside salvage	GO:0043174		6.073E-06	2.711E-03
microtubule binding	GO:0008017		6.143E-06	2.438E-03
lamellipodium	GO:0030027		7.446E-06	2.659E-03
positive regulation of cyclin-dependent protein kinase activity	GO:0045737		9.105E-06	2.956E-03

Parker_GPL887 file

Name	Accession Number	Link	P-val	Corrected P-val
cytoplasmic dynein complex	GO:0005868		8.312E-09	3.032E-05
dynein complex	GO:0030286		9.472E-07	1.728E-03
lamellipodium	GO:0030027		4.356E-06	5.297E-03
positive regulation of viral reproduction	GO:0048524		5.984E-06	5.458E-03
grooming behavior	GO:0007625		5.984E-06	4.366E-03
positive regulation of cell-matrix adhesion	GO:0001954		5.984E-06	3.639E-03
purine salvage	GO:0043101		5.984E-06	3.119E-03
RNA polymerase II carboxy-terminal domain kinase activity	GO:0008353		5.984E-06	2.729E-03
epidermal growth factor receptor binding	GO:0005154		5.984E-06	2.426E-03
microtubule binding	GO:0008017		6.608E-06	2.41E-03
response to insulin stimulus	GO:0032868		6.608E-06	2.191E-03

Pawitan_GPL96-GPL97 file

Name	Accession Number	Link	P-val	Corrected P-val
spindle assembly	GO:0051225		2.18E-12	5.244E-09
natural killer cell mediated immunity	GO:0002228		9.128E-11	1.098E-07
leukocyte mediated cytotoxicity	GO:0001909		2.149E-10	1.724E-07
cell killing	GO:0001906		5.916E-10	3.559E-07
spindle organization	GO:0007051		1.543E-08	7.426E-06
lymphocyte mediated immunity	GO:0002449		2.676E-07	1.073E-04
leukocyte mediated immunity	GO:0002443		4.818E-07	1.656E-04
negative regulation of protein ubiquitination	GO:0031397		7.155E-06	2.152E-03
positive regulation of viral genome replication	GO:0045070		7.155E-06	1.913E-03
regulation of retroviral genome replication	GO:0045091		7.155E-06	1.722E-03
activation of Ras GTPase activity	GO:0032856		7.155E-06	1.565E-03

Schmidt file

Name	Accession Number	Link	P-val	Corrected P-val
spindle assembly	GO:0051225		7.686E-12	1.768E-08
natural killer cell mediated immunity	GO:0002228		1.931E-10	2.22E-07
leukocyte mediated cytotoxicity	GO:0001909		5.049E-10	3.871E-07
cell killing	GO:0001906		1.528E-09	8.786E-07
spindle organization	GO:0007051		4.131E-08	1.9E-05
lymphocyte mediated immunity	GO:0002449		8.203E-07	3.144E-04
leukocyte mediated immunity	GO:0002443		1.419E-06	4.662E-04
microtubule cytoskeleton organization	GO:0000226		2.789E-06	8.018E-04
negative regulation of protein ubiquitination	GO:0031397		1.371E-05	3.505E-03
positive regulation of viral genome replication	GO:0045070		1.371E-05	3.154E-03
regulation of retroviral genome replication	GO:0045091		1.371E-05	2.867E-03

Sotiriou file

Name	Accession Number	Link	P-val	Corrected P-val
spindle assembly	GO:0051225		7.686E-12	1.768E-08
natural killer cell mediated immunity	GO:0002228		1.931E-10	2.22E-07
leukocyte mediated cytotoxicity	GO:0001909		5.049E-10	3.871E-07
cell killing	GO:0001906		1.528E-09	8.786E-07
spindle organization	GO:0007051		4.131E-08	1.9E-05
lymphocyte mediated immunity	GO:0002449		8.203E-07	3.144E-04
leukocyte mediated immunity	GO:0002443		1.419E-06	4.662E-04
microtubule cytoskeleton organization	GO:0000226		2.789E-06	8.018E-04
negative regulation of protein ubiquitination	GO:0031397		1.371E-05	3.505E-03
positive regulation of viral genome replication	GO:0045070		1.371E-05	3.154E-03
regulation of retroviral genome replication	GO:0045091		1.371E-05	2.867E-03

Wang file

Name	Accession Number	Link	P-val	Corrected P-val
spindle assembly	GO:0051225		7.686E-12	1.768E-08
natural killer cell mediated immunity	GO:0002228		1.931E-10	2.22E-07
leukocyte mediated cytotoxicity	GO:0001909		5.049E-10	3.871E-07
cell killing	GO:0001906		1.528E-09	8.786E-07
spindle organization	GO:0007051		4.131E-08	1.9E-05
lymphocyte mediated immunity	GO:0002449		8.203E-07	3.144E-04
leukocyte mediated immunity	GO:0002443		1.419E-06	4.662E-04
microtubule cytoskeleton organization	GO:0000226		2.789E-06	8.018E-04
negative regulation of protein ubiquitination	GO:0031397		1.371E-05	3.505E-03
positive regulation of viral genome replication	GO:0045070		1.371E-05	3.154E-03
regulation of retroviral genome replication	GO:0045091		1.371E-05	2.867E-03

Zhang file

Name	Accession Number	Link	P-val	Corrected P-val
spindle assembly	GO:0051225		7.686E-12	1.768E-08
natural killer cell mediated immunity	GO:0002228		1.931E-10	2.22E-07
leukocyte mediated cytotoxicity	GO:0001909		5.049E-10	3.871E-07
cell killing	GO:0001906		1.528E-09	8.786E-07
spindle organization	GO:0007051		4.131E-08	1.9E-05
lymphocyte mediated immunity	GO:0002449		8.203E-07	3.144E-04
leukocyte mediated immunity	GO:0002443		1.419E-06	4.662E-04
microtubule cytoskeleton organization	GO:0000226		2.789E-06	8.018E-04
negative regulation of protein ubiquitination	GO:0031397		1.371E-05	3.505E-03
positive regulation of viral genome replication	GO:0045070		1.371E-05	3.154E-03
regulation of retroviral genome replication	GO:0045091		1.371E-05	2.867E-03

Zhou file

Name	Accession Number	Link	P-val	Corrected P-val
spindle assembly	GO:0051225		1.681E-11	3.99E-08
natural killer cell mediated immunity	GO:0002228		1.409E-10	1.672E-07
leukocyte mediated cytotoxicity	GO:0001909		3.686E-10	2.915E-07
cell killing	GO:0001906		1.116E-09	6.618E-07
spindle organization	GO:0007051		4.498E-08	2.135E-05
lymphocyte mediated immunity	GO:0002449		7.735E-07	3.059E-04
leukocyte mediated immunity	GO:0002443		1.296E-06	4.393E-04
microtubule cytoskeleton organization	GO:0000226		2.695E-06	7.994E-04
negative regulation of protein ubiquitination	GO:0031397		1.166E-05	3.074E-03
positive regulation of viral genome replication	GO:0045070		1.166E-05	2.766E-03
regulation of retroviral genome replication	GO:0045091		1.166E-05	2.515E-03