Study run-a1
Study informations
119 subnetworks in total page | file
406 genes associated page | file
Enriched GO terms page
General informations
General Index page
Study Index page
Subnetwork 3178-4-real
score
| Dataset | Score | P-val 1 | P-val 2 | P-val 3 |
|---|
| Desmedt | 0.1489 | 8.293e-03 | 9.900e-03 | 8.605e-02 |
|---|
| IPC-NIBC-129 | 0.2124 | 4.897e-02 | 6.225e-02 | 4.462e-01 |
|---|
| Ivshina_GPL96-GPL97 | 0.2574 | 8.520e-03 | 1.333e-02 | 2.390e-01 |
|---|
| Loi_GPL570 | 0.2505 | 1.022e-01 | 1.016e-01 | 4.194e-01 |
|---|
| Loi_GPL96-GPL97 | 0.1573 | 4.000e-06 | 3.100e-05 | 2.100e-05 |
|---|
| Parker_GPL1390 | 0.2598 | 1.978e-01 | 2.077e-01 | 7.269e-01 |
|---|
| Parker_GPL887 | 0.1399 | 5.157e-01 | 5.490e-01 | 5.533e-01 |
|---|
| Pawitan_GPL96-GPL97 | 0.3487 | 1.635e-01 | 1.293e-01 | 6.788e-01 |
|---|
| Schmidt | 0.2511 | 8.946e-03 | 1.284e-02 | 1.199e-01 |
|---|
| Sotiriou | 0.3220 | 1.302e-03 | 3.170e-04 | 3.859e-02 |
|---|
| Wang | 0.2069 | 1.156e-01 | 8.142e-02 | 4.012e-01 |
|---|
| Zhang | 0.2227 | 7.110e-02 | 4.354e-02 | 1.766e-01 |
|---|
| Zhou | 0.4520 | 6.826e-02 | 7.293e-02 | 4.143e-01 |
|---|
Expression data for subnetwork 3178-4-real in each dataset
Desmedt |
IPC-NIBC-129 |
Ivshina_GPL96-GPL97 |
Loi_GPL570 |
Loi_GPL96-GPL97 |
Parker_GPL1390 |
Parker_GPL887 |
Pawitan_GPL96-GPL97 |
Schmidt |
Sotiriou |
Wang |
Zhang |
Zhou |
Subnetwork structure for each dataset
- Desmedt
Score for each gene in subnetwork 3178-4-real in each dataset
| Gene Symbol | Links | Frequency | Frequency Rank | Subnetwork score rank | Global rank |
Desmedt | IPC-NIBC-129 | Ivshina_GPL96-GPL97 | Loi_GPL570 | Loi_GPL96-GPL97 | Parker_GPL1390 | Parker_GPL887 | Pawitan_GPL96-GPL97 | Schmidt | Sotiriou | Wang | Zhang | Zhou |
|---|
| pcna |   | 6 | 43 | 203 | 180 | 0.096 | 0.202 | 0.109 | 0.180 | 0.118 | 0.119 | 0.104 | 0.256 | 0.151 | 0.059 | 0.162 | 0.123 | 0.233 |
|---|
| ptplb | | 1 | 164 | 213 | 226 | 0.070 | 0.038 | 0.194 | 0.139 | 0.169 | 0.101 | -0.438 | 0.132 | 0.168 | 0.180 | 0.109 | 0.126 | 0.290 |
|---|
| dhx9 | | 1 | 164 | 213 | 226 | -0.004 | 0.165 | 0.099 | -0.094 | 0.103 | undef | -0.029 | 0.127 | 0.155 | 0.135 | 0.075 | 0.007 | 0.234 |
|---|
| casp3 | | 2 | 104 | 162 | 157 | -0.051 | 0.158 | 0.146 | 0.160 | 0.074 | 0.210 | 0.252 | 0.202 | 0.070 | 0.073 | 0.004 | 0.059 | 0.305 |
|---|
| ccnd1 | | 102 | 2 | 1 | 2 | 0.127 | -0.183 | 0.062 | 0.190 | 0.157 | -0.002 | -0.190 | 0.105 | -0.107 | 0.174 | 0.106 | 0.144 | 0.290 |
|---|
| sp1 | | 4 | 60 | 203 | 183 | 0.054 | 0.186 | 0.147 | 0.242 | 0.125 | 0.033 | -0.370 | 0.202 | 0.284 | 0.227 | 0.194 | 0.091 | -0.068 |
|---|
| hnrnpa1 | | 4 | 60 | 1 | 9 | -0.021 | 0.209 | 0.088 | -0.020 | 0.087 | 0.131 | undef | 0.082 | 0.036 | 0.089 | 0.077 | 0.083 | 0.195 |
|---|
| sfn | | 50 | 4 | 29 | 17 | 0.077 | 0.137 | 0.111 | 0.172 | 0.112 | 0.119 | 0.141 | 0.219 | 0.100 | 0.147 | 0.025 | 0.079 | 0.181 |
|---|
| bcap31 | | 1 | 164 | 213 | 226 | 0.103 | 0.079 | 0.104 | 0.144 | 0.177 | 0.184 | -0.267 | 0.132 | 0.105 | 0.198 | -0.031 | -0.086 | 0.180 |
|---|
| eif2s1 | | 14 | 17 | 73 | 57 | -0.031 | 0.151 | 0.253 | 0.182 | 0.098 | 0.167 | 0.005 | 0.270 | 0.233 | 0.038 | 0.122 | 0.239 | 0.265 |
|---|
| birc5 | | 14 | 17 | 162 | 140 | 0.101 | 0.216 | 0.190 | 0.134 | 0.223 | 0.149 | 0.166 | 0.202 | 0.236 | 0.241 | 0.124 | 0.205 | 0.400 |
|---|
GO Enrichment output for subnetwork 3178-4-real in each dataset
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| positive regulation of cell cycle | GO:0045787 |  | 1.443E-07 | 3.319E-04 |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 2.411E-07 | 2.772E-04 |
|---|
| negative regulation of caspase activity | GO:0043154 | | 3.932E-07 | 3.014E-04 |
|---|
| release of cytochrome c from mitochondria | GO:0001836 | | 3.932E-07 | 2.261E-04 |
|---|
| negative regulation of peptidase activity | GO:0010466 | | 7.33E-07 | 3.372E-04 |
|---|
| apoptotic mitochondrial changes | GO:0008637 | | 8.79E-07 | 3.37E-04 |
|---|
| positive regulation of nuclear division | GO:0051785 | | 2.466E-06 | 8.102E-04 |
|---|
| negative regulation of hydrolase activity | GO:0051346 | | 5.817E-06 | 1.672E-03 |
|---|
| cytokinesis | GO:0000910 | | 5.817E-06 | 1.487E-03 |
|---|
| keratinocyte differentiation | GO:0030216 | | 6.969E-06 | 1.603E-03 |
|---|
| induction of apoptosis by intracellular signals | GO:0008629 | | 1.048E-05 | 2.192E-03 |
|---|
IPC-NIBC-129 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| positive regulation of cell cycle | GO:0045787 | | 1.722E-08 | 4.207E-05 |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 3.484E-08 | 4.256E-05 |
|---|
| negative regulation of caspase activity | GO:0043154 | | 6.442E-08 | 5.246E-05 |
|---|
| release of cytochrome c from mitochondria | GO:0001836 | | 6.442E-08 | 3.935E-05 |
|---|
| negative regulation of peptidase activity | GO:0010466 | | 1.202E-07 | 5.873E-05 |
|---|
| apoptotic mitochondrial changes | GO:0008637 | | 2.013E-07 | 8.196E-05 |
|---|
| positive regulation of nuclear division | GO:0051785 | | 4.581E-07 | 1.599E-04 |
|---|
| negative regulation of hydrolase activity | GO:0051346 | | 1.253E-06 | 3.827E-04 |
|---|
| cytokinesis | GO:0000910 | | 2.01E-06 | 5.457E-04 |
|---|
| induction of apoptosis by intracellular signals | GO:0008629 | | 2.482E-06 | 6.063E-04 |
|---|
| keratinocyte differentiation | GO:0030216 | | 2.482E-06 | 5.512E-04 |
|---|
Ivshina_GPL96-GPL97 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| positive regulation of cell cycle | GO:0045787 | | 3.331E-08 | 8.014E-05 |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 6.735E-08 | 8.102E-05 |
|---|
| negative regulation of caspase activity | GO:0043154 | | 1.058E-07 | 8.487E-05 |
|---|
| release of cytochrome c from mitochondria | GO:0001836 | | 1.058E-07 | 6.365E-05 |
|---|
| negative regulation of peptidase activity | GO:0010466 | | 1.974E-07 | 9.5E-05 |
|---|
| apoptotic mitochondrial changes | GO:0008637 | | 3.305E-07 | 1.325E-04 |
|---|
| positive regulation of nuclear division | GO:0051785 | | 7.518E-07 | 2.584E-04 |
|---|
| negative regulation of hydrolase activity | GO:0051346 | | 1.885E-06 | 5.669E-04 |
|---|
| cytokinesis | GO:0000910 | | 2.839E-06 | 7.59E-04 |
|---|
| keratinocyte differentiation | GO:0030216 | | 3.062E-06 | 7.367E-04 |
|---|
| induction of apoptosis by intracellular signals | GO:0008629 | | 4.068E-06 | 8.899E-04 |
|---|
Loi_GPL570 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| positive regulation of cell cycle | GO:0045787 | | 1.722E-08 | 4.207E-05 |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 3.484E-08 | 4.256E-05 |
|---|
| negative regulation of caspase activity | GO:0043154 | | 6.442E-08 | 5.246E-05 |
|---|
| release of cytochrome c from mitochondria | GO:0001836 | | 6.442E-08 | 3.935E-05 |
|---|
| negative regulation of peptidase activity | GO:0010466 | | 1.202E-07 | 5.873E-05 |
|---|
| apoptotic mitochondrial changes | GO:0008637 | | 2.013E-07 | 8.196E-05 |
|---|
| positive regulation of nuclear division | GO:0051785 | | 4.581E-07 | 1.599E-04 |
|---|
| negative regulation of hydrolase activity | GO:0051346 | | 1.253E-06 | 3.827E-04 |
|---|
| cytokinesis | GO:0000910 | | 2.01E-06 | 5.457E-04 |
|---|
| induction of apoptosis by intracellular signals | GO:0008629 | | 2.482E-06 | 6.063E-04 |
|---|
| keratinocyte differentiation | GO:0030216 | | 2.482E-06 | 5.512E-04 |
|---|
Loi_GPL96-GPL97 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| positive regulation of cell cycle | GO:0045787 | | 3.331E-08 | 8.014E-05 |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 6.735E-08 | 8.102E-05 |
|---|
| negative regulation of caspase activity | GO:0043154 | | 1.058E-07 | 8.487E-05 |
|---|
| release of cytochrome c from mitochondria | GO:0001836 | | 1.058E-07 | 6.365E-05 |
|---|
| negative regulation of peptidase activity | GO:0010466 | | 1.974E-07 | 9.5E-05 |
|---|
| apoptotic mitochondrial changes | GO:0008637 | | 3.305E-07 | 1.325E-04 |
|---|
| positive regulation of nuclear division | GO:0051785 | | 7.518E-07 | 2.584E-04 |
|---|
| negative regulation of hydrolase activity | GO:0051346 | | 1.885E-06 | 5.669E-04 |
|---|
| cytokinesis | GO:0000910 | | 2.839E-06 | 7.59E-04 |
|---|
| keratinocyte differentiation | GO:0030216 | | 3.062E-06 | 7.367E-04 |
|---|
| induction of apoptosis by intracellular signals | GO:0008629 | | 4.068E-06 | 8.899E-04 |
|---|
Parker_GPL1390 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| cyclin-dependent protein kinase holoenzyme complex | GO:0000307 | | 8.812E-09 | 3.147E-05 |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 1.46E-08 | 2.607E-05 |
|---|
| cyclin-dependent protein kinase regulator activity | GO:0016538 | | 2.594E-08 | 3.088E-05 |
|---|
| protein kinase regulator activity | GO:0019887 | | 4.013E-08 | 3.582E-05 |
|---|
| protein serine/threonine kinase inhibitor activity | GO:0030291 | | 5.717E-08 | 4.083E-05 |
|---|
| release of cytochrome c from mitochondria | GO:0001836 | | 5.717E-08 | 3.403E-05 |
|---|
| kinase regulator activity | GO:0019207 | | 8.516E-08 | 4.344E-05 |
|---|
| apoptotic mitochondrial changes | GO:0008637 | | 2.085E-07 | 9.305E-05 |
|---|
| protein kinase inhibitor activity | GO:0004860 | | 5.124E-07 | 2.033E-04 |
|---|
| kinase inhibitor activity | GO:0019210 | | 6.346E-07 | 2.266E-04 |
|---|
| induction of apoptosis by intracellular signals | GO:0008629 | | 1.921E-06 | 6.237E-04 |
|---|
Parker_GPL887 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| cyclin-dependent protein kinase holoenzyme complex | GO:0000307 | | 8.439E-09 | 3.078E-05 |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 1.59E-08 | 2.899E-05 |
|---|
| negative regulation of caspase activity | GO:0043154 | | 2.484E-08 | 3.021E-05 |
|---|
| protein kinase regulator activity | GO:0019887 | | 4.564E-08 | 4.162E-05 |
|---|
| negative regulation of peptidase activity | GO:0010466 | | 5.475E-08 | 3.994E-05 |
|---|
| release of cytochrome c from mitochondria | GO:0001836 | | 5.475E-08 | 3.329E-05 |
|---|
| cyclin-dependent protein kinase regulator activity | GO:0016538 | | 5.475E-08 | 2.853E-05 |
|---|
| kinase regulator activity | GO:0019207 | | 8.1E-08 | 3.694E-05 |
|---|
| protein serine/threonine kinase inhibitor activity | GO:0030291 | | 8.417E-08 | 3.412E-05 |
|---|
| apoptotic mitochondrial changes | GO:0008637 | | 1.996E-07 | 7.281E-05 |
|---|
| negative regulation of hydrolase activity | GO:0051346 | | 8.943E-07 | 2.966E-04 |
|---|
Pawitan_GPL96-GPL97 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| positive regulation of cell cycle | GO:0045787 | | 3.331E-08 | 8.014E-05 |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 6.735E-08 | 8.102E-05 |
|---|
| negative regulation of caspase activity | GO:0043154 | | 1.058E-07 | 8.487E-05 |
|---|
| release of cytochrome c from mitochondria | GO:0001836 | | 1.058E-07 | 6.365E-05 |
|---|
| negative regulation of peptidase activity | GO:0010466 | | 1.974E-07 | 9.5E-05 |
|---|
| apoptotic mitochondrial changes | GO:0008637 | | 3.305E-07 | 1.325E-04 |
|---|
| positive regulation of nuclear division | GO:0051785 | | 7.518E-07 | 2.584E-04 |
|---|
| negative regulation of hydrolase activity | GO:0051346 | | 1.885E-06 | 5.669E-04 |
|---|
| cytokinesis | GO:0000910 | | 2.839E-06 | 7.59E-04 |
|---|
| keratinocyte differentiation | GO:0030216 | | 3.062E-06 | 7.367E-04 |
|---|
| induction of apoptosis by intracellular signals | GO:0008629 | | 4.068E-06 | 8.899E-04 |
|---|
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| positive regulation of cell cycle | GO:0045787 | | 1.443E-07 | 3.319E-04 |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 2.411E-07 | 2.772E-04 |
|---|
| negative regulation of caspase activity | GO:0043154 | | 3.932E-07 | 3.014E-04 |
|---|
| release of cytochrome c from mitochondria | GO:0001836 | | 3.932E-07 | 2.261E-04 |
|---|
| negative regulation of peptidase activity | GO:0010466 | | 7.33E-07 | 3.372E-04 |
|---|
| apoptotic mitochondrial changes | GO:0008637 | | 8.79E-07 | 3.37E-04 |
|---|
| positive regulation of nuclear division | GO:0051785 | | 2.466E-06 | 8.102E-04 |
|---|
| negative regulation of hydrolase activity | GO:0051346 | | 5.817E-06 | 1.672E-03 |
|---|
| cytokinesis | GO:0000910 | | 5.817E-06 | 1.487E-03 |
|---|
| keratinocyte differentiation | GO:0030216 | | 6.969E-06 | 1.603E-03 |
|---|
| induction of apoptosis by intracellular signals | GO:0008629 | | 1.048E-05 | 2.192E-03 |
|---|
Sotiriou file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| positive regulation of cell cycle | GO:0045787 | | 1.443E-07 | 3.319E-04 |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 2.411E-07 | 2.772E-04 |
|---|
| negative regulation of caspase activity | GO:0043154 | | 3.932E-07 | 3.014E-04 |
|---|
| release of cytochrome c from mitochondria | GO:0001836 | | 3.932E-07 | 2.261E-04 |
|---|
| negative regulation of peptidase activity | GO:0010466 | | 7.33E-07 | 3.372E-04 |
|---|
| apoptotic mitochondrial changes | GO:0008637 | | 8.79E-07 | 3.37E-04 |
|---|
| positive regulation of nuclear division | GO:0051785 | | 2.466E-06 | 8.102E-04 |
|---|
| negative regulation of hydrolase activity | GO:0051346 | | 5.817E-06 | 1.672E-03 |
|---|
| cytokinesis | GO:0000910 | | 5.817E-06 | 1.487E-03 |
|---|
| keratinocyte differentiation | GO:0030216 | | 6.969E-06 | 1.603E-03 |
|---|
| induction of apoptosis by intracellular signals | GO:0008629 | | 1.048E-05 | 2.192E-03 |
|---|
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| positive regulation of cell cycle | GO:0045787 | | 1.443E-07 | 3.319E-04 |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 2.411E-07 | 2.772E-04 |
|---|
| negative regulation of caspase activity | GO:0043154 | | 3.932E-07 | 3.014E-04 |
|---|
| release of cytochrome c from mitochondria | GO:0001836 | | 3.932E-07 | 2.261E-04 |
|---|
| negative regulation of peptidase activity | GO:0010466 | | 7.33E-07 | 3.372E-04 |
|---|
| apoptotic mitochondrial changes | GO:0008637 | | 8.79E-07 | 3.37E-04 |
|---|
| positive regulation of nuclear division | GO:0051785 | | 2.466E-06 | 8.102E-04 |
|---|
| negative regulation of hydrolase activity | GO:0051346 | | 5.817E-06 | 1.672E-03 |
|---|
| cytokinesis | GO:0000910 | | 5.817E-06 | 1.487E-03 |
|---|
| keratinocyte differentiation | GO:0030216 | | 6.969E-06 | 1.603E-03 |
|---|
| induction of apoptosis by intracellular signals | GO:0008629 | | 1.048E-05 | 2.192E-03 |
|---|
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| positive regulation of cell cycle | GO:0045787 | | 1.443E-07 | 3.319E-04 |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 2.411E-07 | 2.772E-04 |
|---|
| negative regulation of caspase activity | GO:0043154 | | 3.932E-07 | 3.014E-04 |
|---|
| release of cytochrome c from mitochondria | GO:0001836 | | 3.932E-07 | 2.261E-04 |
|---|
| negative regulation of peptidase activity | GO:0010466 | | 7.33E-07 | 3.372E-04 |
|---|
| apoptotic mitochondrial changes | GO:0008637 | | 8.79E-07 | 3.37E-04 |
|---|
| positive regulation of nuclear division | GO:0051785 | | 2.466E-06 | 8.102E-04 |
|---|
| negative regulation of hydrolase activity | GO:0051346 | | 5.817E-06 | 1.672E-03 |
|---|
| cytokinesis | GO:0000910 | | 5.817E-06 | 1.487E-03 |
|---|
| keratinocyte differentiation | GO:0030216 | | 6.969E-06 | 1.603E-03 |
|---|
| induction of apoptosis by intracellular signals | GO:0008629 | | 1.048E-05 | 2.192E-03 |
|---|
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| RNA export from nucleus | GO:0006405 | | 1.338E-07 | 3.174E-04 |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 3.833E-07 | 4.547E-04 |
|---|
| negative regulation of caspase activity | GO:0043154 | | 4.877E-07 | 3.858E-04 |
|---|
| nuclear export | GO:0051168 | | 5.154E-07 | 3.058E-04 |
|---|
| release of cytochrome c from mitochondria | GO:0001836 | | 6.092E-07 | 2.891E-04 |
|---|
| negative regulation of peptidase activity | GO:0010466 | | 9.09E-07 | 3.595E-04 |
|---|
| apoptotic mitochondrial changes | GO:0008637 | | 1.773E-06 | 6.009E-04 |
|---|
| nuclear import | GO:0051170 | | 3.251E-06 | 9.643E-04 |
|---|
| negative regulation of hydrolase activity | GO:0051346 | | 8.631E-06 | 2.276E-03 |
|---|
| keratinocyte differentiation | GO:0030216 | | 1.023E-05 | 2.428E-03 |
|---|
| induction of apoptosis by oxidative stress | GO:0008631 | | 1.277E-05 | 2.754E-03 |
|---|
