Study run-a1
Study informations
119 subnetworks in total page | file
406 genes associated page | file
Enriched GO terms page
General informations
General Index page
Study Index page
Subnetwork 26973-3-real
score
| Dataset | Score | P-val 1 | P-val 2 | P-val 3 |
|---|
| Desmedt | 0.2118 | 9.831e-03 | 1.175e-02 | 9.783e-02 |
|---|
| IPC-NIBC-129 | 0.2586 | 7.820e-02 | 1.020e-01 | 5.933e-01 |
|---|
| Ivshina_GPL96-GPL97 | 0.2491 | 1.786e-02 | 2.594e-02 | 3.664e-01 |
|---|
| Loi_GPL570 | 0.2157 | 5.464e-02 | 5.424e-02 | 2.720e-01 |
|---|
| Loi_GPL96-GPL97 | 0.1623 | 1.130e-04 | 5.500e-04 | 2.517e-03 |
|---|
| Parker_GPL1390 | 0.2255 | 8.328e-02 | 8.167e-02 | 4.942e-01 |
|---|
| Parker_GPL887 | 0.0154 | 9.660e-01 | 9.701e-01 | 9.855e-01 |
|---|
| Pawitan_GPL96-GPL97 | 0.3211 | 2.056e-01 | 1.685e-01 | 7.535e-01 |
|---|
| Schmidt | 0.2040 | 6.764e-03 | 9.825e-03 | 9.609e-02 |
|---|
| Sotiriou | 0.3390 | 2.310e-03 | 6.550e-04 | 5.886e-02 |
|---|
| Wang | 0.0164 | 1.068e-01 | 7.427e-02 | 3.815e-01 |
|---|
| Zhang | 0.1996 | 8.866e-01 | 8.757e-01 | 9.910e-01 |
|---|
| Zhou | 0.4176 | 8.861e-02 | 9.687e-02 | 5.065e-01 |
|---|
Expression data for subnetwork 26973-3-real in each dataset
Desmedt |
IPC-NIBC-129 |
Ivshina_GPL96-GPL97 |
Loi_GPL570 |
Loi_GPL96-GPL97 |
Parker_GPL1390 |
Parker_GPL887 |
Pawitan_GPL96-GPL97 |
Schmidt |
Sotiriou |
Wang |
Zhang |
Zhou |
Subnetwork structure for each dataset
- Desmedt
Score for each gene in subnetwork 26973-3-real in each dataset
| Gene Symbol | Links | Frequency | Frequency Rank | Subnetwork score rank | Global rank |
Desmedt | IPC-NIBC-129 | Ivshina_GPL96-GPL97 | Loi_GPL570 | Loi_GPL96-GPL97 | Parker_GPL1390 | Parker_GPL887 | Pawitan_GPL96-GPL97 | Schmidt | Sotiriou | Wang | Zhang | Zhou |
|---|
| cdkn3 |   | 15 | 15 | 128 | 104 | 0.114 | 0.269 | 0.199 | 0.136 | 0.193 | 0.166 | -0.009 | 0.323 | 0.186 | 0.198 | 0.134 | 0.271 | 0.372 |
|---|
| chordc1 | | 1 | 164 | 402 | 402 | 0.012 | 0.273 | 0.007 | -0.076 | 0.084 | 0.055 | -0.057 | -0.027 | 0.124 | 0.057 | 0.033 | 0.104 | 0.133 |
|---|
| cdc37 | | 1 | 164 | 402 | 402 | 0.052 | 0.006 | 0.106 | 0.235 | 0.082 | 0.274 | -0.369 | 0.103 | -0.125 | 0.008 | -0.048 | -0.070 | 0.293 |
|---|
| stmn2 | | 29 | 8 | 1 | 3 | 0.057 | 0.106 | 0.005 | 0.052 | 0.110 | 0.071 | -0.099 | 0.006 | 0.034 | 0.103 | 0.075 | 0.113 | -0.039 |
|---|
| cdkn1a | | 70 | 3 | 73 | 51 | 0.115 | -0.020 | 0.065 | 0.082 | 0.099 | 0.124 | 0.055 | 0.087 | 0.068 | 0.144 | 0.015 | -0.201 | 0.069 |
|---|
| hsp90ab1 | | 1 | 164 | 402 | 402 | 0.148 | 0.102 | 0.119 | 0.274 | 0.162 | 0.121 | 0.104 | 0.283 | 0.001 | 0.159 | -0.082 | -0.081 | 0.223 |
|---|
| brca1 | | 8 | 33 | 175 | 150 | 0.192 | 0.052 | 0.112 | 0.022 | 0.125 | -0.124 | 0.305 | 0.113 | 0.077 | 0.168 | 0.155 | 0.064 | 0.209 |
|---|
| ccnd1 | | 102 | 2 | 1 | 2 | 0.127 | -0.183 | 0.062 | 0.190 | 0.157 | -0.002 | -0.190 | 0.105 | -0.107 | 0.174 | 0.106 | 0.144 | 0.290 |
|---|
| tsc1 | | 47 | 5 | 17 | 8 | 0.049 | 0.012 | -0.055 | 0.072 | 0.055 | -0.144 | -0.242 | -0.196 | 0.006 | 0.010 | 0.043 | -0.007 | 0.207 |
|---|
| cdc2 | | 103 | 1 | 1 | 1 | 0.073 | 0.247 | 0.206 | 0.172 | 0.247 | 0.153 | -0.131 | 0.282 | 0.226 | 0.221 | 0.067 | 0.297 | 0.336 |
|---|
| cdk2 | | 2 | 104 | 262 | 250 | 0.102 | 0.241 | 0.092 | 0.008 | 0.100 | 0.011 | 0.132 | 0.236 | 0.154 | 0.122 | 0.186 | 0.046 | 0.232 |
|---|
| birc5 | | 14 | 17 | 162 | 140 | 0.101 | 0.216 | 0.190 | 0.134 | 0.223 | 0.149 | 0.166 | 0.202 | 0.236 | 0.241 | 0.124 | 0.205 | 0.400 |
|---|
GO Enrichment output for subnetwork 26973-3-real in each dataset
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| interphase of mitotic cell cycle | GO:0051329 |  | 4.354E-10 | 1.001E-06 |
|---|
| interphase | GO:0051325 | | 5.012E-10 | 5.764E-07 |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 2.591E-09 | 1.987E-06 |
|---|
| G2/M transition of mitotic cell cycle | GO:0000086 | | 7.361E-09 | 4.233E-06 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 1.494E-07 | 6.87E-05 |
|---|
| regulation of protein ubiquitination | GO:0031396 | | 5.775E-07 | 2.214E-04 |
|---|
| positive regulation of nitric oxide biosynthetic process | GO:0045429 | | 8.618E-07 | 2.832E-04 |
|---|
| regulation of nitric oxide biosynthetic process | GO:0045428 | | 1.442E-06 | 4.145E-04 |
|---|
| response to unfolded protein | GO:0006986 | | 1.516E-06 | 3.873E-04 |
|---|
| response to protein stimulus | GO:0051789 | | 1.958E-06 | 4.504E-04 |
|---|
| placenta development | GO:0001890 | | 4.119E-06 | 8.612E-04 |
|---|
IPC-NIBC-129 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| interphase of mitotic cell cycle | GO:0051329 | | 4.862E-11 | 1.188E-07 |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 3.679E-10 | 4.494E-07 |
|---|
| positive regulation of nitric oxide biosynthetic process | GO:0045429 | | 4.859E-10 | 3.957E-07 |
|---|
| regulation of nitric oxide biosynthetic process | GO:0045428 | | 9.491E-10 | 5.797E-07 |
|---|
| G2/M transition of mitotic cell cycle | GO:0000086 | | 2.003E-09 | 9.784E-07 |
|---|
| response to unfolded protein | GO:0006986 | | 3.805E-09 | 1.549E-06 |
|---|
| response to protein stimulus | GO:0051789 | | 5.278E-09 | 1.842E-06 |
|---|
| placenta development | GO:0001890 | | 8.251E-09 | 2.52E-06 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 2.559E-08 | 6.946E-06 |
|---|
| regulation of protein ubiquitination | GO:0031396 | | 1.506E-07 | 3.679E-05 |
|---|
| induction of apoptosis by intracellular signals | GO:0008629 | | 3.767E-06 | 8.366E-04 |
|---|
Ivshina_GPL96-GPL97 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| interphase of mitotic cell cycle | GO:0051329 | | 6.011E-11 | 1.446E-07 |
|---|
| interphase | GO:0051325 | | 7.27E-11 | 8.746E-08 |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 5.213E-10 | 4.181E-07 |
|---|
| G2/M transition of mitotic cell cycle | GO:0000086 | | 2.673E-09 | 1.608E-06 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 3.414E-08 | 1.643E-05 |
|---|
| regulation of protein ubiquitination | GO:0031396 | | 1.883E-07 | 7.55E-05 |
|---|
| positive regulation of nitric oxide biosynthetic process | GO:0045429 | | 2.285E-07 | 7.854E-05 |
|---|
| regulation of nitric oxide biosynthetic process | GO:0045428 | | 3.826E-07 | 1.151E-04 |
|---|
| response to unfolded protein | GO:0006986 | | 4.157E-07 | 1.111E-04 |
|---|
| response to protein stimulus | GO:0051789 | | 5.472E-07 | 1.317E-04 |
|---|
| placenta development | GO:0001890 | | 1.995E-06 | 4.363E-04 |
|---|
Loi_GPL570 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| interphase of mitotic cell cycle | GO:0051329 | | 4.862E-11 | 1.188E-07 |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 3.679E-10 | 4.494E-07 |
|---|
| positive regulation of nitric oxide biosynthetic process | GO:0045429 | | 4.859E-10 | 3.957E-07 |
|---|
| regulation of nitric oxide biosynthetic process | GO:0045428 | | 9.491E-10 | 5.797E-07 |
|---|
| G2/M transition of mitotic cell cycle | GO:0000086 | | 2.003E-09 | 9.784E-07 |
|---|
| response to unfolded protein | GO:0006986 | | 3.805E-09 | 1.549E-06 |
|---|
| response to protein stimulus | GO:0051789 | | 5.278E-09 | 1.842E-06 |
|---|
| placenta development | GO:0001890 | | 8.251E-09 | 2.52E-06 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 2.559E-08 | 6.946E-06 |
|---|
| regulation of protein ubiquitination | GO:0031396 | | 1.506E-07 | 3.679E-05 |
|---|
| induction of apoptosis by intracellular signals | GO:0008629 | | 3.767E-06 | 8.366E-04 |
|---|
Loi_GPL96-GPL97 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| interphase of mitotic cell cycle | GO:0051329 | | 6.011E-11 | 1.446E-07 |
|---|
| interphase | GO:0051325 | | 7.27E-11 | 8.746E-08 |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 5.213E-10 | 4.181E-07 |
|---|
| G2/M transition of mitotic cell cycle | GO:0000086 | | 2.673E-09 | 1.608E-06 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 3.414E-08 | 1.643E-05 |
|---|
| regulation of protein ubiquitination | GO:0031396 | | 1.883E-07 | 7.55E-05 |
|---|
| positive regulation of nitric oxide biosynthetic process | GO:0045429 | | 2.285E-07 | 7.854E-05 |
|---|
| regulation of nitric oxide biosynthetic process | GO:0045428 | | 3.826E-07 | 1.151E-04 |
|---|
| response to unfolded protein | GO:0006986 | | 4.157E-07 | 1.111E-04 |
|---|
| response to protein stimulus | GO:0051789 | | 5.472E-07 | 1.317E-04 |
|---|
| placenta development | GO:0001890 | | 1.995E-06 | 4.363E-04 |
|---|
Parker_GPL1390 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| cyclin-dependent protein kinase holoenzyme complex | GO:0000307 | | 7.479E-12 | 2.671E-08 |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 9.116E-11 | 1.628E-07 |
|---|
| interphase of mitotic cell cycle | GO:0051329 | | 1.163E-09 | 1.385E-06 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 1.722E-08 | 1.537E-05 |
|---|
| cyclin-dependent protein kinase regulator activity | GO:0016538 | | 3.704E-08 | 2.646E-05 |
|---|
| regulation of protein ubiquitination | GO:0031396 | | 6.416E-08 | 3.819E-05 |
|---|
| G2/M transition of mitotic cell cycle | GO:0000086 | | 1.523E-07 | 7.771E-05 |
|---|
| induction of apoptosis by intracellular signals | GO:0008629 | | 2.739E-06 | 1.223E-03 |
|---|
| response to UV | GO:0009411 | | 4.081E-06 | 1.619E-03 |
|---|
| nitric-oxide synthase regulator activity | GO:0030235 | | 4.142E-06 | 1.479E-03 |
|---|
| negative regulation of protein ubiquitination | GO:0031397 | | 4.142E-06 | 1.344E-03 |
|---|
Parker_GPL887 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| cyclin-dependent protein kinase holoenzyme complex | GO:0000307 | | 9.979E-11 | 3.64E-07 |
|---|
| interphase of mitotic cell cycle | GO:0051329 | | 3.837E-10 | 6.999E-07 |
|---|
| interphase | GO:0051325 | | 4.456E-10 | 5.419E-07 |
|---|
| G2/M transition of mitotic cell cycle | GO:0000086 | | 2.579E-09 | 2.352E-06 |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 3.12E-09 | 2.276E-06 |
|---|
| regulation of cytokine-mediated signaling pathway | GO:0001959 | | 2.811E-08 | 1.709E-05 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 1.713E-07 | 8.925E-05 |
|---|
| midbody | GO:0030496 | | 3.078E-07 | 1.404E-04 |
|---|
| cyclin-dependent protein kinase regulator activity | GO:0016538 | | 5.085E-07 | 2.061E-04 |
|---|
| regulation of protein ubiquitination | GO:0031396 | | 7.811E-07 | 2.849E-04 |
|---|
| spindle microtubule | GO:0005876 | | 1.136E-06 | 3.769E-04 |
|---|
Pawitan_GPL96-GPL97 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| interphase of mitotic cell cycle | GO:0051329 | | 6.011E-11 | 1.446E-07 |
|---|
| interphase | GO:0051325 | | 7.27E-11 | 8.746E-08 |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 5.213E-10 | 4.181E-07 |
|---|
| G2/M transition of mitotic cell cycle | GO:0000086 | | 2.673E-09 | 1.608E-06 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 3.414E-08 | 1.643E-05 |
|---|
| regulation of protein ubiquitination | GO:0031396 | | 1.883E-07 | 7.55E-05 |
|---|
| positive regulation of nitric oxide biosynthetic process | GO:0045429 | | 2.285E-07 | 7.854E-05 |
|---|
| regulation of nitric oxide biosynthetic process | GO:0045428 | | 3.826E-07 | 1.151E-04 |
|---|
| response to unfolded protein | GO:0006986 | | 4.157E-07 | 1.111E-04 |
|---|
| response to protein stimulus | GO:0051789 | | 5.472E-07 | 1.317E-04 |
|---|
| placenta development | GO:0001890 | | 1.995E-06 | 4.363E-04 |
|---|
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| interphase of mitotic cell cycle | GO:0051329 | | 4.354E-10 | 1.001E-06 |
|---|
| interphase | GO:0051325 | | 5.012E-10 | 5.764E-07 |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 2.591E-09 | 1.987E-06 |
|---|
| G2/M transition of mitotic cell cycle | GO:0000086 | | 7.361E-09 | 4.233E-06 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 1.494E-07 | 6.87E-05 |
|---|
| regulation of protein ubiquitination | GO:0031396 | | 5.775E-07 | 2.214E-04 |
|---|
| positive regulation of nitric oxide biosynthetic process | GO:0045429 | | 8.618E-07 | 2.832E-04 |
|---|
| regulation of nitric oxide biosynthetic process | GO:0045428 | | 1.442E-06 | 4.145E-04 |
|---|
| response to unfolded protein | GO:0006986 | | 1.516E-06 | 3.873E-04 |
|---|
| response to protein stimulus | GO:0051789 | | 1.958E-06 | 4.504E-04 |
|---|
| placenta development | GO:0001890 | | 4.119E-06 | 8.612E-04 |
|---|
Sotiriou file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| interphase of mitotic cell cycle | GO:0051329 | | 4.354E-10 | 1.001E-06 |
|---|
| interphase | GO:0051325 | | 5.012E-10 | 5.764E-07 |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 2.591E-09 | 1.987E-06 |
|---|
| G2/M transition of mitotic cell cycle | GO:0000086 | | 7.361E-09 | 4.233E-06 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 1.494E-07 | 6.87E-05 |
|---|
| regulation of protein ubiquitination | GO:0031396 | | 5.775E-07 | 2.214E-04 |
|---|
| positive regulation of nitric oxide biosynthetic process | GO:0045429 | | 8.618E-07 | 2.832E-04 |
|---|
| regulation of nitric oxide biosynthetic process | GO:0045428 | | 1.442E-06 | 4.145E-04 |
|---|
| response to unfolded protein | GO:0006986 | | 1.516E-06 | 3.873E-04 |
|---|
| response to protein stimulus | GO:0051789 | | 1.958E-06 | 4.504E-04 |
|---|
| placenta development | GO:0001890 | | 4.119E-06 | 8.612E-04 |
|---|
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| interphase of mitotic cell cycle | GO:0051329 | | 4.354E-10 | 1.001E-06 |
|---|
| interphase | GO:0051325 | | 5.012E-10 | 5.764E-07 |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 2.591E-09 | 1.987E-06 |
|---|
| G2/M transition of mitotic cell cycle | GO:0000086 | | 7.361E-09 | 4.233E-06 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 1.494E-07 | 6.87E-05 |
|---|
| regulation of protein ubiquitination | GO:0031396 | | 5.775E-07 | 2.214E-04 |
|---|
| positive regulation of nitric oxide biosynthetic process | GO:0045429 | | 8.618E-07 | 2.832E-04 |
|---|
| regulation of nitric oxide biosynthetic process | GO:0045428 | | 1.442E-06 | 4.145E-04 |
|---|
| response to unfolded protein | GO:0006986 | | 1.516E-06 | 3.873E-04 |
|---|
| response to protein stimulus | GO:0051789 | | 1.958E-06 | 4.504E-04 |
|---|
| placenta development | GO:0001890 | | 4.119E-06 | 8.612E-04 |
|---|
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| interphase of mitotic cell cycle | GO:0051329 | | 4.354E-10 | 1.001E-06 |
|---|
| interphase | GO:0051325 | | 5.012E-10 | 5.764E-07 |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 2.591E-09 | 1.987E-06 |
|---|
| G2/M transition of mitotic cell cycle | GO:0000086 | | 7.361E-09 | 4.233E-06 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 1.494E-07 | 6.87E-05 |
|---|
| regulation of protein ubiquitination | GO:0031396 | | 5.775E-07 | 2.214E-04 |
|---|
| positive regulation of nitric oxide biosynthetic process | GO:0045429 | | 8.618E-07 | 2.832E-04 |
|---|
| regulation of nitric oxide biosynthetic process | GO:0045428 | | 1.442E-06 | 4.145E-04 |
|---|
| response to unfolded protein | GO:0006986 | | 1.516E-06 | 3.873E-04 |
|---|
| response to protein stimulus | GO:0051789 | | 1.958E-06 | 4.504E-04 |
|---|
| placenta development | GO:0001890 | | 4.119E-06 | 8.612E-04 |
|---|
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| interphase of mitotic cell cycle | GO:0051329 | | 3.028E-10 | 7.185E-07 |
|---|
| interphase | GO:0051325 | | 3.48E-10 | 4.129E-07 |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 2.182E-09 | 1.726E-06 |
|---|
| G2/M transition of mitotic cell cycle | GO:0000086 | | 5.433E-09 | 3.223E-06 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 1.213E-07 | 5.757E-05 |
|---|
| regulation of protein ubiquitination | GO:0031396 | | 3.666E-07 | 1.45E-04 |
|---|
| positive regulation of nitric oxide biosynthetic process | GO:0045429 | | 1.143E-06 | 3.876E-04 |
|---|
| response to unfolded protein | GO:0006986 | | 1.379E-06 | 4.09E-04 |
|---|
| response to protein stimulus | GO:0051789 | | 1.759E-06 | 4.639E-04 |
|---|
| regulation of nitric oxide biosynthetic process | GO:0045428 | | 2.024E-06 | 4.804E-04 |
|---|
| placenta development | GO:0001890 | | 4.934E-06 | 1.064E-03 |
|---|
