Study run-a1
Study informations
119 subnetworks in total page | file
406 genes associated page | file
Enriched GO terms page
General informations
General Index page
Study Index page
Subnetwork 23512-2-real
score
| Dataset | Score | P-val 1 | P-val 2 | P-val 3 |
|---|
| Desmedt | 0.1420 | 1.035e-02 | 1.237e-02 | 1.016e-01 |
|---|
| IPC-NIBC-129 | 0.2379 | 4.032e-02 | 5.060e-02 | 3.903e-01 |
|---|
| Ivshina_GPL96-GPL97 | 0.2466 | 1.300e-02 | 1.949e-02 | 3.071e-01 |
|---|
| Loi_GPL570 | 0.2306 | 7.249e-02 | 7.202e-02 | 3.328e-01 |
|---|
| Loi_GPL96-GPL97 | 0.1615 | 3.600e-05 | 2.050e-04 | 5.260e-04 |
|---|
| Parker_GPL1390 | 0.2739 | 2.166e-01 | 2.288e-01 | 7.520e-01 |
|---|
| Parker_GPL887 | 0.0629 | 7.899e-01 | 8.096e-01 | 8.447e-01 |
|---|
| Pawitan_GPL96-GPL97 | 0.3304 | 1.838e-01 | 1.481e-01 | 7.173e-01 |
|---|
| Schmidt | 0.2204 | 2.966e-02 | 4.030e-02 | 2.874e-01 |
|---|
| Sotiriou | 0.2484 | 4.108e-03 | 1.354e-03 | 8.877e-02 |
|---|
| Wang | 0.1946 | 1.080e-01 | 7.527e-02 | 3.843e-01 |
|---|
| Zhang | 0.2110 | 8.488e-02 | 5.383e-02 | 2.076e-01 |
|---|
| Zhou | 0.3829 | 8.120e-02 | 8.810e-02 | 4.747e-01 |
|---|
Expression data for subnetwork 23512-2-real in each dataset
Desmedt |
IPC-NIBC-129 |
Ivshina_GPL96-GPL97 |
Loi_GPL570 |
Loi_GPL96-GPL97 |
Parker_GPL1390 |
Parker_GPL887 |
Pawitan_GPL96-GPL97 |
Schmidt |
Sotiriou |
Wang |
Zhang |
Zhou |
Subnetwork structure for each dataset
- Desmedt
Score for each gene in subnetwork 23512-2-real in each dataset
| Gene Symbol | Links | Frequency | Frequency Rank | Subnetwork score rank | Global rank |
Desmedt | IPC-NIBC-129 | Ivshina_GPL96-GPL97 | Loi_GPL570 | Loi_GPL96-GPL97 | Parker_GPL1390 | Parker_GPL887 | Pawitan_GPL96-GPL97 | Schmidt | Sotiriou | Wang | Zhang | Zhou |
|---|
| akt1 |   | 1 | 164 | 391 | 391 | -0.034 | 0.048 | 0.133 | 0.127 | 0.087 | 0.236 | -0.303 | 0.084 | -0.111 | 0.004 | -0.022 | 0.023 | 0.273 |
|---|
| pcna | | 6 | 43 | 203 | 180 | 0.096 | 0.202 | 0.109 | 0.180 | 0.118 | 0.119 | 0.104 | 0.256 | 0.151 | 0.059 | 0.162 | 0.123 | 0.233 |
|---|
| fen1 | | 3 | 79 | 292 | 272 | 0.045 | 0.194 | 0.169 | 0.196 | 0.136 | 0.252 | 0.033 | 0.332 | 0.221 | 0.144 | 0.106 | 0.056 | 0.114 |
|---|
| suz12 | | 1 | 164 | 391 | 391 | 0.057 | 0.166 | 0.080 | -0.025 | 0.072 | -0.046 | -0.127 | 0.042 | 0.120 | -0.026 | 0.061 | 0.052 | 0.083 |
|---|
| cdkn1a | | 70 | 3 | 73 | 51 | 0.115 | -0.020 | 0.065 | 0.082 | 0.099 | 0.124 | 0.055 | 0.087 | 0.068 | 0.144 | 0.015 | -0.201 | 0.069 |
|---|
| ccnd1 | | 102 | 2 | 1 | 2 | 0.127 | -0.183 | 0.062 | 0.190 | 0.157 | -0.002 | -0.190 | 0.105 | -0.107 | 0.174 | 0.106 | 0.144 | 0.290 |
|---|
| cks2 | | 44 | 6 | 73 | 54 | 0.050 | 0.233 | 0.170 | 0.103 | 0.186 | 0.172 | 0.093 | 0.167 | 0.263 | 0.151 | 0.145 | 0.284 | 0.383 |
|---|
| cdc2 | | 103 | 1 | 1 | 1 | 0.073 | 0.247 | 0.206 | 0.172 | 0.247 | 0.153 | -0.131 | 0.282 | 0.226 | 0.221 | 0.067 | 0.297 | 0.336 |
|---|
| sfn | | 50 | 4 | 29 | 17 | 0.077 | 0.137 | 0.111 | 0.172 | 0.112 | 0.119 | 0.141 | 0.219 | 0.100 | 0.147 | 0.025 | 0.079 | 0.181 |
|---|
| ezh2 | | 2 | 104 | 328 | 316 | 0.058 | 0.253 | 0.191 | 0.110 | 0.106 | 0.142 | 0.054 | 0.250 | 0.218 | 0.172 | 0.123 | 0.126 | 0.374 |
|---|
GO Enrichment output for subnetwork 23512-2-real in each dataset
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 |  | 2.231E-12 | 5.13E-09 |
|---|
| response to UV | GO:0009411 | | 2.968E-10 | 3.413E-07 |
|---|
| response to light stimulus | GO:0009416 | | 1.292E-08 | 9.908E-06 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 1.785E-08 | 1.026E-05 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 4.246E-08 | 1.953E-05 |
|---|
| phosphoinositide-mediated signaling | GO:0048015 | | 3.296E-07 | 1.263E-04 |
|---|
| apoptotic mitochondrial changes | GO:0008637 | | 4.138E-07 | 1.36E-04 |
|---|
| interphase of mitotic cell cycle | GO:0051329 | | 7.149E-07 | 2.055E-04 |
|---|
| interphase | GO:0051325 | | 7.842E-07 | 2.004E-04 |
|---|
| induction of apoptosis by intracellular signals | GO:0008629 | | 4.954E-06 | 1.139E-03 |
|---|
| anagen | GO:0042640 | | 6.861E-06 | 1.435E-03 |
|---|
IPC-NIBC-129 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 6.416E-14 | 1.567E-10 |
|---|
| response to UV | GO:0009411 | | 2.185E-11 | 2.668E-08 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 3.315E-09 | 2.7E-06 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 3.4E-09 | 2.077E-06 |
|---|
| phosphoinositide-mediated signaling | GO:0048015 | | 2.452E-08 | 1.198E-05 |
|---|
| apoptotic mitochondrial changes | GO:0008637 | | 6.901E-08 | 2.81E-05 |
|---|
| interphase of mitotic cell cycle | GO:0051329 | | 7.245E-08 | 2.528E-05 |
|---|
| induction of apoptosis by intracellular signals | GO:0008629 | | 8.536E-07 | 2.607E-04 |
|---|
| positive regulation of cell cycle | GO:0045787 | | 1.04E-06 | 2.822E-04 |
|---|
| positive regulation of growth | GO:0045927 | | 1.406E-06 | 3.436E-04 |
|---|
| anagen | GO:0042640 | | 1.661E-06 | 3.689E-04 |
|---|
Ivshina_GPL96-GPL97 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 1.73E-13 | 4.164E-10 |
|---|
| response to UV | GO:0009411 | | 4.12E-11 | 4.956E-08 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 5.589E-09 | 4.482E-06 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 6.42E-09 | 3.862E-06 |
|---|
| phosphoinositide-mediated signaling | GO:0048015 | | 4.741E-08 | 2.282E-05 |
|---|
| apoptotic mitochondrial changes | GO:0008637 | | 1.134E-07 | 4.546E-05 |
|---|
| interphase of mitotic cell cycle | GO:0051329 | | 1.235E-07 | 4.244E-05 |
|---|
| interphase | GO:0051325 | | 1.4E-07 | 4.209E-05 |
|---|
| induction of apoptosis by intracellular signals | GO:0008629 | | 1.401E-06 | 3.744E-04 |
|---|
| positive regulation of cell cycle | GO:0045787 | | 1.706E-06 | 4.104E-04 |
|---|
| positive regulation of growth | GO:0045927 | | 2.177E-06 | 4.761E-04 |
|---|
Loi_GPL570 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 6.416E-14 | 1.567E-10 |
|---|
| response to UV | GO:0009411 | | 2.185E-11 | 2.668E-08 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 3.315E-09 | 2.7E-06 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 3.4E-09 | 2.077E-06 |
|---|
| phosphoinositide-mediated signaling | GO:0048015 | | 2.452E-08 | 1.198E-05 |
|---|
| apoptotic mitochondrial changes | GO:0008637 | | 6.901E-08 | 2.81E-05 |
|---|
| interphase of mitotic cell cycle | GO:0051329 | | 7.245E-08 | 2.528E-05 |
|---|
| induction of apoptosis by intracellular signals | GO:0008629 | | 8.536E-07 | 2.607E-04 |
|---|
| positive regulation of cell cycle | GO:0045787 | | 1.04E-06 | 2.822E-04 |
|---|
| positive regulation of growth | GO:0045927 | | 1.406E-06 | 3.436E-04 |
|---|
| anagen | GO:0042640 | | 1.661E-06 | 3.689E-04 |
|---|
Loi_GPL96-GPL97 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 1.73E-13 | 4.164E-10 |
|---|
| response to UV | GO:0009411 | | 4.12E-11 | 4.956E-08 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 5.589E-09 | 4.482E-06 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 6.42E-09 | 3.862E-06 |
|---|
| phosphoinositide-mediated signaling | GO:0048015 | | 4.741E-08 | 2.282E-05 |
|---|
| apoptotic mitochondrial changes | GO:0008637 | | 1.134E-07 | 4.546E-05 |
|---|
| interphase of mitotic cell cycle | GO:0051329 | | 1.235E-07 | 4.244E-05 |
|---|
| interphase | GO:0051325 | | 1.4E-07 | 4.209E-05 |
|---|
| induction of apoptosis by intracellular signals | GO:0008629 | | 1.401E-06 | 3.744E-04 |
|---|
| positive regulation of cell cycle | GO:0045787 | | 1.706E-06 | 4.104E-04 |
|---|
| positive regulation of growth | GO:0045927 | | 2.177E-06 | 4.761E-04 |
|---|
Parker_GPL1390 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 9.331E-14 | 3.332E-10 |
|---|
| cyclin-dependent protein kinase holoenzyme complex | GO:0000307 | | 4.489E-12 | 8.014E-09 |
|---|
| cyclin-dependent protein kinase regulator activity | GO:0016538 | | 2.114E-11 | 2.517E-08 |
|---|
| response to UV | GO:0009411 | | 4.114E-11 | 3.673E-08 |
|---|
| protein kinase regulator activity | GO:0019887 | | 1.639E-10 | 1.171E-07 |
|---|
| kinase regulator activity | GO:0019207 | | 4.235E-10 | 2.521E-07 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 3.149E-09 | 1.606E-06 |
|---|
| methyltransferase complex | GO:0034708 | | 5.509E-09 | 2.459E-06 |
|---|
| PcG protein complex | GO:0031519 | | 8.812E-09 | 3.496E-06 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 1.036E-08 | 3.698E-06 |
|---|
| protein serine/threonine kinase inhibitor activity | GO:0030291 | | 5.717E-08 | 1.856E-05 |
|---|
Parker_GPL887 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 6.28E-14 | 2.291E-10 |
|---|
| cyclin-dependent protein kinase holoenzyme complex | GO:0000307 | | 2.871E-12 | 5.236E-09 |
|---|
| response to UV | GO:0009411 | | 1.594E-11 | 1.938E-08 |
|---|
| cyclin-dependent protein kinase regulator activity | GO:0016538 | | 4.099E-11 | 3.738E-08 |
|---|
| protein kinase regulator activity | GO:0019887 | | 1.16E-10 | 8.465E-08 |
|---|
| kinase regulator activity | GO:0019207 | | 2.393E-10 | 1.455E-07 |
|---|
| response to light stimulus | GO:0009416 | | 9.701E-10 | 5.055E-07 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 2.194E-09 | 1E-06 |
|---|
| PcG protein complex | GO:0031519 | | 3.838E-09 | 1.556E-06 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 5.016E-09 | 1.83E-06 |
|---|
| methyltransferase complex | GO:0034708 | | 6.139E-09 | 2.036E-06 |
|---|
Pawitan_GPL96-GPL97 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 1.73E-13 | 4.164E-10 |
|---|
| response to UV | GO:0009411 | | 4.12E-11 | 4.956E-08 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 5.589E-09 | 4.482E-06 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 6.42E-09 | 3.862E-06 |
|---|
| phosphoinositide-mediated signaling | GO:0048015 | | 4.741E-08 | 2.282E-05 |
|---|
| apoptotic mitochondrial changes | GO:0008637 | | 1.134E-07 | 4.546E-05 |
|---|
| interphase of mitotic cell cycle | GO:0051329 | | 1.235E-07 | 4.244E-05 |
|---|
| interphase | GO:0051325 | | 1.4E-07 | 4.209E-05 |
|---|
| induction of apoptosis by intracellular signals | GO:0008629 | | 1.401E-06 | 3.744E-04 |
|---|
| positive regulation of cell cycle | GO:0045787 | | 1.706E-06 | 4.104E-04 |
|---|
| positive regulation of growth | GO:0045927 | | 2.177E-06 | 4.761E-04 |
|---|
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 2.231E-12 | 5.13E-09 |
|---|
| response to UV | GO:0009411 | | 2.968E-10 | 3.413E-07 |
|---|
| response to light stimulus | GO:0009416 | | 1.292E-08 | 9.908E-06 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 1.785E-08 | 1.026E-05 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 4.246E-08 | 1.953E-05 |
|---|
| phosphoinositide-mediated signaling | GO:0048015 | | 3.296E-07 | 1.263E-04 |
|---|
| apoptotic mitochondrial changes | GO:0008637 | | 4.138E-07 | 1.36E-04 |
|---|
| interphase of mitotic cell cycle | GO:0051329 | | 7.149E-07 | 2.055E-04 |
|---|
| interphase | GO:0051325 | | 7.842E-07 | 2.004E-04 |
|---|
| induction of apoptosis by intracellular signals | GO:0008629 | | 4.954E-06 | 1.139E-03 |
|---|
| anagen | GO:0042640 | | 6.861E-06 | 1.435E-03 |
|---|
Sotiriou file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 2.231E-12 | 5.13E-09 |
|---|
| response to UV | GO:0009411 | | 2.968E-10 | 3.413E-07 |
|---|
| response to light stimulus | GO:0009416 | | 1.292E-08 | 9.908E-06 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 1.785E-08 | 1.026E-05 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 4.246E-08 | 1.953E-05 |
|---|
| phosphoinositide-mediated signaling | GO:0048015 | | 3.296E-07 | 1.263E-04 |
|---|
| apoptotic mitochondrial changes | GO:0008637 | | 4.138E-07 | 1.36E-04 |
|---|
| interphase of mitotic cell cycle | GO:0051329 | | 7.149E-07 | 2.055E-04 |
|---|
| interphase | GO:0051325 | | 7.842E-07 | 2.004E-04 |
|---|
| induction of apoptosis by intracellular signals | GO:0008629 | | 4.954E-06 | 1.139E-03 |
|---|
| anagen | GO:0042640 | | 6.861E-06 | 1.435E-03 |
|---|
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 2.231E-12 | 5.13E-09 |
|---|
| response to UV | GO:0009411 | | 2.968E-10 | 3.413E-07 |
|---|
| response to light stimulus | GO:0009416 | | 1.292E-08 | 9.908E-06 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 1.785E-08 | 1.026E-05 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 4.246E-08 | 1.953E-05 |
|---|
| phosphoinositide-mediated signaling | GO:0048015 | | 3.296E-07 | 1.263E-04 |
|---|
| apoptotic mitochondrial changes | GO:0008637 | | 4.138E-07 | 1.36E-04 |
|---|
| interphase of mitotic cell cycle | GO:0051329 | | 7.149E-07 | 2.055E-04 |
|---|
| interphase | GO:0051325 | | 7.842E-07 | 2.004E-04 |
|---|
| induction of apoptosis by intracellular signals | GO:0008629 | | 4.954E-06 | 1.139E-03 |
|---|
| anagen | GO:0042640 | | 6.861E-06 | 1.435E-03 |
|---|
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 2.231E-12 | 5.13E-09 |
|---|
| response to UV | GO:0009411 | | 2.968E-10 | 3.413E-07 |
|---|
| response to light stimulus | GO:0009416 | | 1.292E-08 | 9.908E-06 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 1.785E-08 | 1.026E-05 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 4.246E-08 | 1.953E-05 |
|---|
| phosphoinositide-mediated signaling | GO:0048015 | | 3.296E-07 | 1.263E-04 |
|---|
| apoptotic mitochondrial changes | GO:0008637 | | 4.138E-07 | 1.36E-04 |
|---|
| interphase of mitotic cell cycle | GO:0051329 | | 7.149E-07 | 2.055E-04 |
|---|
| interphase | GO:0051325 | | 7.842E-07 | 2.004E-04 |
|---|
| induction of apoptosis by intracellular signals | GO:0008629 | | 4.954E-06 | 1.139E-03 |
|---|
| anagen | GO:0042640 | | 6.861E-06 | 1.435E-03 |
|---|
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 4.843E-12 | 1.149E-08 |
|---|
| response to UV | GO:0009411 | | 4.957E-10 | 5.881E-07 |
|---|
| positive regulation of cyclin-dependent protein kinase activity | GO:0045737 | | 2.174E-08 | 1.719E-05 |
|---|
| histone ubiquitination | GO:0016574 | | 2.174E-08 | 1.29E-05 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 6.232E-08 | 2.958E-05 |
|---|
| histone methylation | GO:0016571 | | 1.77E-07 | 7.001E-05 |
|---|
| phosphoinositide-mediated signaling | GO:0048015 | | 5.785E-07 | 1.961E-04 |
|---|
| protein ubiquitination | GO:0016567 | | 7.115E-07 | 2.111E-04 |
|---|
| apoptotic mitochondrial changes | GO:0008637 | | 8.195E-07 | 2.161E-04 |
|---|
| interphase of mitotic cell cycle | GO:0051329 | | 9.974E-07 | 2.367E-04 |
|---|
| interphase | GO:0051325 | | 1.093E-06 | 2.358E-04 |
|---|
