Study run-a1

Study informations

119 subnetworks in total page | file

406 genes associated page | file

Enriched GO terms page

General informations

General Index page

Study Index page

Subnetwork 1537-1-real

score

Dataset	Score	P-val 1	P-val 2	P-val 3
Desmedt	0.2084	8.712e-03	1.040e-02	8.932e-02
IPC-NIBC-129	0.1982	3.790e-02	4.737e-02	3.734e-01
Ivshina_GPL96-GPL97	0.2550	4.131e-03	6.951e-03	1.502e-01
Loi_GPL570	0.2842	1.232e-01	1.226e-01	4.726e-01
Loi_GPL96-GPL97	0.1511	1.000e-06	1.200e-05	4.000e-06
Parker_GPL1390	0.2783	8.739e-02	8.608e-02	5.063e-01
Parker_GPL887	0.5364	3.599e-02	4.700e-02	2.402e-02
Pawitan_GPL96-GPL97	0.4093	9.306e-01	9.322e-01	1.000e+00
Schmidt	0.2658	5.977e-03	8.728e-03	8.698e-02
Sotiriou	0.3465	8.038e-03	3.153e-03	1.405e-01
Wang	0.2302	1.277e-01	9.151e-02	4.274e-01
Zhang	0.0207	5.060e-02	2.897e-02	1.286e-01
Zhou	0.3421	3.818e-02	3.850e-02	2.461e-01

Expression data for subnetwork 1537-1-real in each dataset

Desmedt | IPC-NIBC-129 | Ivshina_GPL96-GPL97 | Loi_GPL570 | Loi_GPL96-GPL97 | Parker_GPL1390 | Parker_GPL887 | Pawitan_GPL96-GPL97 | Schmidt | Sotiriou | Wang | Zhang | Zhou |

Subnetwork structure for each dataset

Desmedt IPC-NIBC-129 Ivshina_GPL96-GPL97 Loi_GPL570 Loi_GPL96-GPL97 Parker_GPL1390 Parker_GPL887 Pawitan_GPL96-GPL97 Schmidt Sotiriou Wang Zhang Zhou

Desmedt

Score for each gene in subnetwork 1537-1-real in each dataset

Gene Symbol	Links	Frequency	Frequency Rank	Subnetwork score rank	Global rank	Desmedt	IPC-NIBC-129	Ivshina_GPL96-GPL97	Loi_GPL570	Loi_GPL96-GPL97	Parker_GPL1390	Parker_GPL887	Pawitan_GPL96-GPL97	Schmidt	Sotiriou	Wang	Zhang	Zhou
agtpbp1		11	21	17	13	0.086	0.219	0.009	0.181	0.071	0.078	0.296	0.026	0.110	0.151	0.103	0.064	0.226
psmd2		7	38	37	28	0.147	0.322	0.122	0.146	0.143	0.246	0.444	0.194	0.318	0.151	0.154	0.042	0.207
cycs		10	25	17	14	0.073	0.206	0.080	0.094	0.117	-0.056	0.202	0.272	0.157	0.077	0.190	0.135	0.234
ppfia1		8	33	17	16	0.164	0.080	0.149	0.269	0.151	0.214	0.093	0.225	0.036	0.176	0.153	0.127	0.272
hspb1		19	11	17	11	0.190	-0.050	0.184	0.212	0.231	-0.026	-0.065	0.289	-0.021	0.201	0.125	-0.077	0.290
triap1		1	164	37	65	-0.037	0.067	0.191	0.117	0.140	0.281	-0.288	0.123	0.163	0.130	0.142	0.078	0.249
cyc1		1	164	37	65	0.072	0.077	0.066	0.193	0.165	-0.125	0.569	0.253	0.104	0.189	0.082	0.064	0.140
mapkapk2		13	19	17	12	-0.050	0.102	0.156	-0.116	0.090	0.168	0.303	0.074	0.171	0.117	0.085	-0.124	0.312
stip1		1	164	37	65	0.082	0.158	0.188	0.072	0.192	0.093	0.211	0.178	0.134	0.203	0.001	0.044	0.138
slc20a1		7	38	37	28	0.041	0.039	0.109	0.170	0.101	0.121	0.326	0.086	0.048	0.124	0.121	-0.050	0.299
apaf1		2	104	37	46	0.033	0.135	0.021	-0.049	0.072	0.087	0.202	0.001	0.120	0.008	0.026	-0.004	0.228
hspa1a		4	60	37	39	0.047	-0.046	0.070	0.019	0.160	0.104	0.230	0.108	0.121	0.110	0.175	-0.055	0.192

GO Enrichment output for subnetwork 1537-1-real in each dataset

Desmedt file

Name	Accession Number	Link	P-val	Corrected P-val
activation of caspase activity by cytochrome c	GO:0008635		2.981E-08	6.856E-05
DNA damage response. signal transduction by p53 class mediator resulting in cell cycle arrest	GO:0006977		1.371E-05	0.0157705
activation of caspase activity	GO:0006919		1.787E-05	0.01370377
positive regulation of caspase activity	GO:0043280		2.495E-05	0.01434893
G1 DNA damage checkpoint	GO:0031571		2.876E-05	0.01322803
phosphate transport	GO:0006817		3.831E-05	0.01468716
regulation of caspase activity	GO:0043281		6.22E-05	0.02043693
regulation of endopeptidase activity	GO:0052548		6.811E-05	0.01958173
regulation of peptidase activity	GO:0052547		8.447E-05	0.0215863
response to unfolded protein	GO:0006986		9.926E-05	0.02282952
response to protein stimulus	GO:0051789		1.2E-04	0.02509127

IPC-NIBC-129 file

Name	Accession Number	Link	P-val	Corrected P-val
activation of caspase activity by cytochrome c	GO:0008635		1.329E-11	3.247E-08
activation of caspase activity	GO:0006919		4.287E-08	5.237E-05
positive regulation of caspase activity	GO:0043280		7.329E-08	5.968E-05
DNA fragmentation involved in apoptosis	GO:0006309		2.076E-07	1.268E-04
regulation of caspase activity	GO:0043281		2.118E-07	1.035E-04
regulation of endopeptidase activity	GO:0052548		2.487E-07	1.013E-04
regulation of peptidase activity	GO:0052547		3.207E-07	1.119E-04
cell structure disassembly during apoptosis	GO:0006921		4.054E-07	1.238E-04
apoptotic nuclear changes	GO:0030262		4.691E-07	1.273E-04
DNA catabolic process. endonucleolytic	GO:0000737		6.16E-07	1.505E-04
nucleus organization	GO:0006997		2.985E-06	6.629E-04

Ivshina_GPL96-GPL97 file

Name	Accession Number	Link	P-val	Corrected P-val
activation of caspase activity by cytochrome c	GO:0008635		2.578E-11	6.202E-08
activation of caspase activity	GO:0006919		7.008E-08	8.43E-05
positive regulation of caspase activity	GO:0043280		1.224E-07	9.812E-05
DNA fragmentation involved in apoptosis	GO:0006309		3.409E-07	2.051E-04
regulation of caspase activity	GO:0043281		3.656E-07	1.759E-04
regulation of endopeptidase activity	GO:0052548		4.084E-07	1.638E-04
regulation of peptidase activity	GO:0052547		5.318E-07	1.828E-04
cell structure disassembly during apoptosis	GO:0006921		6.654E-07	2.001E-04
apoptotic nuclear changes	GO:0030262		7.7E-07	2.058E-04
DNA catabolic process. endonucleolytic	GO:0000737		1.011E-06	2.432E-04
nucleus organization	GO:0006997		4.181E-06	9.145E-04

Loi_GPL570 file

Name	Accession Number	Link	P-val	Corrected P-val
activation of caspase activity by cytochrome c	GO:0008635		1.329E-11	3.247E-08
activation of caspase activity	GO:0006919		4.287E-08	5.237E-05
positive regulation of caspase activity	GO:0043280		7.329E-08	5.968E-05
DNA fragmentation involved in apoptosis	GO:0006309		2.076E-07	1.268E-04
regulation of caspase activity	GO:0043281		2.118E-07	1.035E-04
regulation of endopeptidase activity	GO:0052548		2.487E-07	1.013E-04
regulation of peptidase activity	GO:0052547		3.207E-07	1.119E-04
cell structure disassembly during apoptosis	GO:0006921		4.054E-07	1.238E-04
apoptotic nuclear changes	GO:0030262		4.691E-07	1.273E-04
DNA catabolic process. endonucleolytic	GO:0000737		6.16E-07	1.505E-04
nucleus organization	GO:0006997		2.985E-06	6.629E-04

Loi_GPL96-GPL97 file

Name	Accession Number	Link	P-val	Corrected P-val
activation of caspase activity by cytochrome c	GO:0008635		2.578E-11	6.202E-08
activation of caspase activity	GO:0006919		7.008E-08	8.43E-05
positive regulation of caspase activity	GO:0043280		1.224E-07	9.812E-05
DNA fragmentation involved in apoptosis	GO:0006309		3.409E-07	2.051E-04
regulation of caspase activity	GO:0043281		3.656E-07	1.759E-04
regulation of endopeptidase activity	GO:0052548		4.084E-07	1.638E-04
regulation of peptidase activity	GO:0052547		5.318E-07	1.828E-04
cell structure disassembly during apoptosis	GO:0006921		6.654E-07	2.001E-04
apoptotic nuclear changes	GO:0030262		7.7E-07	2.058E-04
DNA catabolic process. endonucleolytic	GO:0000737		1.011E-06	2.432E-04
nucleus organization	GO:0006997		4.181E-06	9.145E-04

Parker_GPL1390 file

Name	Accession Number	Link	P-val	Corrected P-val
activation of caspase activity by cytochrome c	GO:0008635		2.981E-08	1.064E-04
caspase regulator activity	GO:0043028		2.754E-06	4.918E-03
activation of caspase activity	GO:0006919		1.262E-05	0.01502496
DNA damage response. signal transduction by p53 class mediator resulting in cell cycle arrest	GO:0006977		1.448E-05	0.01292428
positive regulation of caspase activity	GO:0043280		1.831E-05	0.0130765
proteasome regulatory particle	GO:0005838		2.026E-05	0.01205556
sodium:phosphate symporter activity	GO:0005436		2.026E-05	0.01033334
phosphate transport	GO:0006817		2.699E-05	0.01204847
G1 DNA damage checkpoint	GO:0031571		2.699E-05	0.01070975
caspase inhibitor activity	GO:0043027		2.699E-05	9.639E-03
mitochondrial respiratory chain	GO:0005746		3.268E-05	0.01060879

Parker_GPL887 file

Name	Accession Number	Link	P-val	Corrected P-val
activation of caspase activity by cytochrome c	GO:0008635		2.606E-08	9.508E-05
caspase regulator activity	GO:0043028		1.492E-06	2.721E-03
DNA damage response. signal transduction by p53 class mediator resulting in cell cycle arrest	GO:0006977		8.717E-06	0.01060044
activation of caspase activity	GO:0006919		8.993E-06	8.202E-03
positive regulation of caspase activity	GO:0043280		1.257E-05	9.168E-03
cerebellar Purkinje cell layer development	GO:0021680		1.829E-05	0.01111778
sodium:phosphate symporter activity	GO:0005436		1.829E-05	9.53E-03
G1 DNA damage checkpoint	GO:0031571		1.829E-05	8.338E-03
cerebellar cortex formation	GO:0021697		2.437E-05	9.877E-03
phosphate transport	GO:0006817		2.437E-05	8.889E-03
proteasome regulatory particle	GO:0005838		2.437E-05	8.081E-03

Pawitan_GPL96-GPL97 file

Name	Accession Number	Link	P-val	Corrected P-val
activation of caspase activity by cytochrome c	GO:0008635		2.578E-11	6.202E-08
activation of caspase activity	GO:0006919		7.008E-08	8.43E-05
positive regulation of caspase activity	GO:0043280		1.224E-07	9.812E-05
DNA fragmentation involved in apoptosis	GO:0006309		3.409E-07	2.051E-04
regulation of caspase activity	GO:0043281		3.656E-07	1.759E-04
regulation of endopeptidase activity	GO:0052548		4.084E-07	1.638E-04
regulation of peptidase activity	GO:0052547		5.318E-07	1.828E-04
cell structure disassembly during apoptosis	GO:0006921		6.654E-07	2.001E-04
apoptotic nuclear changes	GO:0030262		7.7E-07	2.058E-04
DNA catabolic process. endonucleolytic	GO:0000737		1.011E-06	2.432E-04
nucleus organization	GO:0006997		4.181E-06	9.145E-04

Schmidt file

Name	Accession Number	Link	P-val	Corrected P-val
activation of caspase activity by cytochrome c	GO:0008635		2.981E-08	6.856E-05
DNA damage response. signal transduction by p53 class mediator resulting in cell cycle arrest	GO:0006977		1.371E-05	0.0157705
activation of caspase activity	GO:0006919		1.787E-05	0.01370377
positive regulation of caspase activity	GO:0043280		2.495E-05	0.01434893
G1 DNA damage checkpoint	GO:0031571		2.876E-05	0.01322803
phosphate transport	GO:0006817		3.831E-05	0.01468716
regulation of caspase activity	GO:0043281		6.22E-05	0.02043693
regulation of endopeptidase activity	GO:0052548		6.811E-05	0.01958173
regulation of peptidase activity	GO:0052547		8.447E-05	0.0215863
response to unfolded protein	GO:0006986		9.926E-05	0.02282952
response to protein stimulus	GO:0051789		1.2E-04	0.02509127

Sotiriou file

Name	Accession Number	Link	P-val	Corrected P-val
activation of caspase activity by cytochrome c	GO:0008635		2.981E-08	6.856E-05
DNA damage response. signal transduction by p53 class mediator resulting in cell cycle arrest	GO:0006977		1.371E-05	0.0157705
activation of caspase activity	GO:0006919		1.787E-05	0.01370377
positive regulation of caspase activity	GO:0043280		2.495E-05	0.01434893
G1 DNA damage checkpoint	GO:0031571		2.876E-05	0.01322803
phosphate transport	GO:0006817		3.831E-05	0.01468716
regulation of caspase activity	GO:0043281		6.22E-05	0.02043693
regulation of endopeptidase activity	GO:0052548		6.811E-05	0.01958173
regulation of peptidase activity	GO:0052547		8.447E-05	0.0215863
response to unfolded protein	GO:0006986		9.926E-05	0.02282952
response to protein stimulus	GO:0051789		1.2E-04	0.02509127

Wang file

Name	Accession Number	Link	P-val	Corrected P-val
activation of caspase activity by cytochrome c	GO:0008635		2.981E-08	6.856E-05
DNA damage response. signal transduction by p53 class mediator resulting in cell cycle arrest	GO:0006977		1.371E-05	0.0157705
activation of caspase activity	GO:0006919		1.787E-05	0.01370377
positive regulation of caspase activity	GO:0043280		2.495E-05	0.01434893
G1 DNA damage checkpoint	GO:0031571		2.876E-05	0.01322803
phosphate transport	GO:0006817		3.831E-05	0.01468716
regulation of caspase activity	GO:0043281		6.22E-05	0.02043693
regulation of endopeptidase activity	GO:0052548		6.811E-05	0.01958173
regulation of peptidase activity	GO:0052547		8.447E-05	0.0215863
response to unfolded protein	GO:0006986		9.926E-05	0.02282952
response to protein stimulus	GO:0051789		1.2E-04	0.02509127

Zhang file

Name	Accession Number	Link	P-val	Corrected P-val
activation of caspase activity by cytochrome c	GO:0008635		2.981E-08	6.856E-05
DNA damage response. signal transduction by p53 class mediator resulting in cell cycle arrest	GO:0006977		1.371E-05	0.0157705
activation of caspase activity	GO:0006919		1.787E-05	0.01370377
positive regulation of caspase activity	GO:0043280		2.495E-05	0.01434893
G1 DNA damage checkpoint	GO:0031571		2.876E-05	0.01322803
phosphate transport	GO:0006817		3.831E-05	0.01468716
regulation of caspase activity	GO:0043281		6.22E-05	0.02043693
regulation of endopeptidase activity	GO:0052548		6.811E-05	0.01958173
regulation of peptidase activity	GO:0052547		8.447E-05	0.0215863
response to unfolded protein	GO:0006986		9.926E-05	0.02282952
response to protein stimulus	GO:0051789		1.2E-04	0.02509127

Zhou file

Name	Accession Number	Link	P-val	Corrected P-val
activation of caspase activity by cytochrome c	GO:0008635		1.736E-08	4.119E-05
activation of caspase activity	GO:0006919		1.284E-05	0.01523739
DNA damage response. signal transduction by p53 class mediator resulting in cell cycle arrest	GO:0006977		1.438E-05	0.01137215
positive regulation of caspase activity	GO:0043280		1.756E-05	0.01041841
G1 DNA damage checkpoint	GO:0031571		2.68E-05	0.01272144
regulation of caspase activity	GO:0043281		4.18E-05	0.01653358
regulation of endopeptidase activity	GO:0052548		4.56E-05	0.01545936
regulation of peptidase activity	GO:0052547		5.607E-05	0.01663285
phosphate transport	GO:0006817		6.303E-05	0.01661886
G1/S transition checkpoint	GO:0031575		1.001E-04	0.02375216
DNA fragmentation involved in apoptosis	GO:0006309		1.143E-04	0.02466268