Study run-a1
Study informations
119 subnetworks in total page | file
406 genes associated page | file
Enriched GO terms page
General informations
General Index page
Study Index page
Subnetwork 1452-1-real
score
| Dataset | Score | P-val 1 | P-val 2 | P-val 3 |
|---|
| Desmedt | 0.1805 | 7.352e-03 | 8.769e-03 | 7.852e-02 |
|---|
| IPC-NIBC-129 | 0.2662 | 1.490e-02 | 1.725e-02 | 1.748e-01 |
|---|
| Ivshina_GPL96-GPL97 | 0.2632 | 9.580e-04 | 1.870e-03 | 5.265e-02 |
|---|
| Loi_GPL570 | 0.3516 | 4.923e-02 | 4.887e-02 | 2.520e-01 |
|---|
| Loi_GPL96-GPL97 | 0.1350 | 4.000e-06 | 3.000e-05 | 2.000e-05 |
|---|
| Parker_GPL1390 | 0.3450 | 1.287e-01 | 1.310e-01 | 6.081e-01 |
|---|
| Parker_GPL887 | 0.0650 | 7.815e-01 | 8.018e-01 | 8.367e-01 |
|---|
| Pawitan_GPL96-GPL97 | 0.4049 | 5.657e-01 | 5.379e-01 | 9.818e-01 |
|---|
| Schmidt | 0.2516 | 9.357e-03 | 1.341e-02 | 1.242e-01 |
|---|
| Sotiriou | 0.3192 | 4.377e-03 | 1.467e-03 | 9.280e-02 |
|---|
| Wang | 0.1658 | 1.649e-01 | 1.233e-01 | 4.995e-01 |
|---|
| Zhang | 0.0903 | 1.282e-01 | 8.816e-02 | 2.984e-01 |
|---|
| Zhou | 0.3791 | 3.983e-02 | 4.034e-02 | 2.564e-01 |
|---|
Expression data for subnetwork 1452-1-real in each dataset
Desmedt |
IPC-NIBC-129 |
Ivshina_GPL96-GPL97 |
Loi_GPL570 |
Loi_GPL96-GPL97 |
Parker_GPL1390 |
Parker_GPL887 |
Pawitan_GPL96-GPL97 |
Schmidt |
Sotiriou |
Wang |
Zhang |
Zhou |
Subnetwork structure for each dataset
- Desmedt
Score for each gene in subnetwork 1452-1-real in each dataset
| Gene Symbol | Links | Frequency | Frequency Rank | Subnetwork score rank | Global rank |
Desmedt | IPC-NIBC-129 | Ivshina_GPL96-GPL97 | Loi_GPL570 | Loi_GPL96-GPL97 | Parker_GPL1390 | Parker_GPL887 | Pawitan_GPL96-GPL97 | Schmidt | Sotiriou | Wang | Zhang | Zhou |
|---|
| ppp2r5d |   | 3 | 79 | 17 | 22 | 0.098 | 0.040 | 0.057 | 0.270 | 0.092 | 0.237 | 0.299 | 0.241 | 0.017 | 0.103 | 0.033 | 0.048 | 0.162 |
|---|
| tbl3 | | 4 | 60 | 31 | 30 | 0.068 | -0.007 | 0.137 | 0.048 | 0.104 | -0.071 | 0.518 | 0.154 | 0.067 | 0.128 | 0.061 | 0.054 | 0.267 |
|---|
| cdkn1a | | 70 | 3 | 73 | 51 | 0.115 | -0.020 | 0.065 | 0.082 | 0.099 | 0.124 | 0.055 | 0.087 | 0.068 | 0.144 | 0.015 | -0.201 | 0.069 |
|---|
| csnk1a1 | | 1 | 164 | 240 | 243 | 0.023 | 0.068 | -0.045 | 0.120 | 0.099 | -0.096 | -0.402 | -0.041 | 0.027 | 0.055 | 0.076 | 0.002 | 0.234 |
|---|
| ppfia1 | | 8 | 33 | 17 | 16 | 0.164 | 0.080 | 0.149 | 0.269 | 0.151 | 0.214 | 0.093 | 0.225 | 0.036 | 0.176 | 0.153 | 0.127 | 0.272 |
|---|
| ranbp1 | | 4 | 60 | 100 | 91 | -0.016 | 0.220 | 0.154 | 0.205 | 0.114 | 0.234 | 0.180 | 0.253 | 0.217 | 0.082 | -0.006 | -0.003 | 0.136 |
|---|
| tsc1 | | 47 | 5 | 17 | 8 | 0.049 | 0.012 | -0.055 | 0.072 | 0.055 | -0.144 | -0.242 | -0.196 | 0.006 | 0.010 | 0.043 | -0.007 | 0.207 |
|---|
| ran | | 4 | 60 | 100 | 91 | 0.032 | 0.181 | 0.147 | 0.083 | 0.166 | 0.250 | -0.287 | 0.247 | 0.127 | 0.178 | 0.052 | -0.025 | 0.254 |
|---|
| cdc2 | | 103 | 1 | 1 | 1 | 0.073 | 0.247 | 0.206 | 0.172 | 0.247 | 0.153 | -0.131 | 0.282 | 0.226 | 0.221 | 0.067 | 0.297 | 0.336 |
|---|
| ranbp9 | | 4 | 60 | 100 | 91 | 0.172 | 0.207 | 0.012 | 0.253 | 0.126 | 0.186 | -0.113 | 0.148 | 0.143 | 0.127 | 0.205 | 0.021 | 0.164 |
|---|
| sfn | | 50 | 4 | 29 | 17 | 0.077 | 0.137 | 0.111 | 0.172 | 0.112 | 0.119 | 0.141 | 0.219 | 0.100 | 0.147 | 0.025 | 0.079 | 0.181 |
|---|
| rcc1 | | 4 | 60 | 100 | 91 | -0.056 | 0.114 | 0.136 | 0.093 | 0.114 | 0.146 | 0.325 | 0.167 | 0.113 | 0.063 | -0.108 | 0.072 | 0.253 |
|---|
| git1 | | 5 | 50 | 78 | 70 | 0.082 | -0.027 | 0.097 | 0.051 | 0.077 | 0.074 | -0.099 | 0.138 | 0.087 | 0.097 | -0.065 | -0.065 | 0.114 |
|---|
GO Enrichment output for subnetwork 1452-1-real in each dataset
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| spindle organization | GO:0007051 |  | 1.026E-07 | 2.359E-04 |
|---|
| microtubule cytoskeleton organization | GO:0000226 | | 1.38E-07 | 1.586E-04 |
|---|
| mitotic spindle organization | GO:0007052 | | 4.781E-07 | 3.665E-04 |
|---|
| Wnt receptor signaling pathway | GO:0016055 | | 7.867E-06 | 4.524E-03 |
|---|
| RNA export from nucleus | GO:0006405 | | 1.547E-05 | 7.115E-03 |
|---|
| negative regulation of protein ubiquitination | GO:0031397 | | 2.121E-05 | 8.131E-03 |
|---|
| regulation of centrosome cycle | GO:0046605 | | 2.121E-05 | 6.969E-03 |
|---|
| positive regulation of Rho GTPase activity | GO:0032321 | | 2.121E-05 | 6.098E-03 |
|---|
| induction of apoptosis by intracellular signals | GO:0008629 | | 2.782E-05 | 7.109E-03 |
|---|
| microtubule nucleation | GO:0007020 | | 3.179E-05 | 7.311E-03 |
|---|
| cGMP-mediated signaling | GO:0019934 | | 3.179E-05 | 6.646E-03 |
|---|
IPC-NIBC-129 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| spindle organization | GO:0007051 | | 2.777E-08 | 6.784E-05 |
|---|
| mitotic spindle organization | GO:0007052 | | 1.912E-07 | 2.336E-04 |
|---|
| RNA export from nucleus | GO:0006405 | | 9.087E-06 | 7.4E-03 |
|---|
| negative regulation of protein ubiquitination | GO:0031397 | | 9.402E-06 | 5.742E-03 |
|---|
| regulation of centrosome cycle | GO:0046605 | | 9.402E-06 | 4.594E-03 |
|---|
| induction of apoptosis by intracellular signals | GO:0008629 | | 1.206E-05 | 4.912E-03 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 1.29E-05 | 4.501E-03 |
|---|
| cGMP-mediated signaling | GO:0019934 | | 1.409E-05 | 4.304E-03 |
|---|
| activation of Ras GTPase activity | GO:0032856 | | 1.409E-05 | 3.826E-03 |
|---|
| microtubule nucleation | GO:0007020 | | 1.972E-05 | 4.818E-03 |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 2.467E-05 | 5.48E-03 |
|---|
Ivshina_GPL96-GPL97 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| spindle organization | GO:0007051 | | 4.758E-08 | 1.145E-04 |
|---|
| mitotic spindle organization | GO:0007052 | | 2.872E-07 | 3.455E-04 |
|---|
| RNA export from nucleus | GO:0006405 | | 9.949E-06 | 7.979E-03 |
|---|
| negative regulation of protein ubiquitination | GO:0031397 | | 1.234E-05 | 7.425E-03 |
|---|
| regulation of centrosome cycle | GO:0046605 | | 1.234E-05 | 5.94E-03 |
|---|
| activation of Ras GTPase activity | GO:0032856 | | 1.234E-05 | 4.95E-03 |
|---|
| induction of apoptosis by intracellular signals | GO:0008629 | | 1.806E-05 | 6.207E-03 |
|---|
| cGMP-mediated signaling | GO:0019934 | | 1.85E-05 | 5.565E-03 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 1.93E-05 | 5.16E-03 |
|---|
| microtubule nucleation | GO:0007020 | | 2.589E-05 | 6.228E-03 |
|---|
| nuclear export | GO:0051168 | | 3.313E-05 | 7.246E-03 |
|---|
Loi_GPL570 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| spindle organization | GO:0007051 | | 2.777E-08 | 6.784E-05 |
|---|
| mitotic spindle organization | GO:0007052 | | 1.912E-07 | 2.336E-04 |
|---|
| RNA export from nucleus | GO:0006405 | | 9.087E-06 | 7.4E-03 |
|---|
| negative regulation of protein ubiquitination | GO:0031397 | | 9.402E-06 | 5.742E-03 |
|---|
| regulation of centrosome cycle | GO:0046605 | | 9.402E-06 | 4.594E-03 |
|---|
| induction of apoptosis by intracellular signals | GO:0008629 | | 1.206E-05 | 4.912E-03 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 1.29E-05 | 4.501E-03 |
|---|
| cGMP-mediated signaling | GO:0019934 | | 1.409E-05 | 4.304E-03 |
|---|
| activation of Ras GTPase activity | GO:0032856 | | 1.409E-05 | 3.826E-03 |
|---|
| microtubule nucleation | GO:0007020 | | 1.972E-05 | 4.818E-03 |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 2.467E-05 | 5.48E-03 |
|---|
Loi_GPL96-GPL97 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| spindle organization | GO:0007051 | | 4.758E-08 | 1.145E-04 |
|---|
| mitotic spindle organization | GO:0007052 | | 2.872E-07 | 3.455E-04 |
|---|
| RNA export from nucleus | GO:0006405 | | 9.949E-06 | 7.979E-03 |
|---|
| negative regulation of protein ubiquitination | GO:0031397 | | 1.234E-05 | 7.425E-03 |
|---|
| regulation of centrosome cycle | GO:0046605 | | 1.234E-05 | 5.94E-03 |
|---|
| activation of Ras GTPase activity | GO:0032856 | | 1.234E-05 | 4.95E-03 |
|---|
| induction of apoptosis by intracellular signals | GO:0008629 | | 1.806E-05 | 6.207E-03 |
|---|
| cGMP-mediated signaling | GO:0019934 | | 1.85E-05 | 5.565E-03 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 1.93E-05 | 5.16E-03 |
|---|
| microtubule nucleation | GO:0007020 | | 2.589E-05 | 6.228E-03 |
|---|
| nuclear export | GO:0051168 | | 3.313E-05 | 7.246E-03 |
|---|
Parker_GPL1390 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| microtubule cytoskeleton organization | GO:0000226 | | 4.899E-09 | 1.749E-05 |
|---|
| spindle organization | GO:0007051 | | 5.925E-09 | 1.058E-05 |
|---|
| Ran GTPase binding | GO:0008536 | | 4.937E-08 | 5.877E-05 |
|---|
| mitotic spindle organization | GO:0007052 | | 9.043E-08 | 8.073E-05 |
|---|
| protein serine/threonine kinase inhibitor activity | GO:0030291 | | 1.495E-07 | 1.068E-04 |
|---|
| RNA export from nucleus | GO:0006405 | | 9.398E-07 | 5.594E-04 |
|---|
| protein kinase inhibitor activity | GO:0004860 | | 1.337E-06 | 6.82E-04 |
|---|
| kinase inhibitor activity | GO:0019210 | | 1.655E-06 | 7.388E-04 |
|---|
| nuclear export | GO:0051168 | | 4.009E-06 | 1.591E-03 |
|---|
| induction of apoptosis by intracellular signals | GO:0008629 | | 5.001E-06 | 1.786E-03 |
|---|
| negative regulation of protein ubiquitination | GO:0031397 | | 6.073E-06 | 1.971E-03 |
|---|
Parker_GPL887 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| spindle organization | GO:0007051 | | 4.633E-09 | 1.69E-05 |
|---|
| microtubule cytoskeleton organization | GO:0000226 | | 5.587E-09 | 1.019E-05 |
|---|
| Ran GTPase binding | GO:0008536 | | 3.486E-08 | 4.239E-05 |
|---|
| mitotic spindle organization | GO:0007052 | | 9.117E-08 | 8.315E-05 |
|---|
| protein serine/threonine kinase inhibitor activity | GO:0030291 | | 2.316E-07 | 1.69E-04 |
|---|
| RNA export from nucleus | GO:0006405 | | 1.203E-06 | 7.317E-04 |
|---|
| protein kinase inhibitor activity | GO:0004860 | | 2.454E-06 | 1.279E-03 |
|---|
| kinase inhibitor activity | GO:0019210 | | 2.682E-06 | 1.223E-03 |
|---|
| induction of apoptosis by intracellular signals | GO:0008629 | | 4.356E-06 | 1.766E-03 |
|---|
| nuclear export | GO:0051168 | | 4.689E-06 | 1.711E-03 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 5.039E-06 | 1.671E-03 |
|---|
Pawitan_GPL96-GPL97 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| spindle organization | GO:0007051 | | 4.758E-08 | 1.145E-04 |
|---|
| mitotic spindle organization | GO:0007052 | | 2.872E-07 | 3.455E-04 |
|---|
| RNA export from nucleus | GO:0006405 | | 9.949E-06 | 7.979E-03 |
|---|
| negative regulation of protein ubiquitination | GO:0031397 | | 1.234E-05 | 7.425E-03 |
|---|
| regulation of centrosome cycle | GO:0046605 | | 1.234E-05 | 5.94E-03 |
|---|
| activation of Ras GTPase activity | GO:0032856 | | 1.234E-05 | 4.95E-03 |
|---|
| induction of apoptosis by intracellular signals | GO:0008629 | | 1.806E-05 | 6.207E-03 |
|---|
| cGMP-mediated signaling | GO:0019934 | | 1.85E-05 | 5.565E-03 |
|---|
| G1/S transition of mitotic cell cycle | GO:0000082 | | 1.93E-05 | 5.16E-03 |
|---|
| microtubule nucleation | GO:0007020 | | 2.589E-05 | 6.228E-03 |
|---|
| nuclear export | GO:0051168 | | 3.313E-05 | 7.246E-03 |
|---|
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| spindle organization | GO:0007051 | | 1.026E-07 | 2.359E-04 |
|---|
| microtubule cytoskeleton organization | GO:0000226 | | 1.38E-07 | 1.586E-04 |
|---|
| mitotic spindle organization | GO:0007052 | | 4.781E-07 | 3.665E-04 |
|---|
| Wnt receptor signaling pathway | GO:0016055 | | 7.867E-06 | 4.524E-03 |
|---|
| RNA export from nucleus | GO:0006405 | | 1.547E-05 | 7.115E-03 |
|---|
| negative regulation of protein ubiquitination | GO:0031397 | | 2.121E-05 | 8.131E-03 |
|---|
| regulation of centrosome cycle | GO:0046605 | | 2.121E-05 | 6.969E-03 |
|---|
| positive regulation of Rho GTPase activity | GO:0032321 | | 2.121E-05 | 6.098E-03 |
|---|
| induction of apoptosis by intracellular signals | GO:0008629 | | 2.782E-05 | 7.109E-03 |
|---|
| microtubule nucleation | GO:0007020 | | 3.179E-05 | 7.311E-03 |
|---|
| cGMP-mediated signaling | GO:0019934 | | 3.179E-05 | 6.646E-03 |
|---|
Sotiriou file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| spindle organization | GO:0007051 | | 1.026E-07 | 2.359E-04 |
|---|
| microtubule cytoskeleton organization | GO:0000226 | | 1.38E-07 | 1.586E-04 |
|---|
| mitotic spindle organization | GO:0007052 | | 4.781E-07 | 3.665E-04 |
|---|
| Wnt receptor signaling pathway | GO:0016055 | | 7.867E-06 | 4.524E-03 |
|---|
| RNA export from nucleus | GO:0006405 | | 1.547E-05 | 7.115E-03 |
|---|
| negative regulation of protein ubiquitination | GO:0031397 | | 2.121E-05 | 8.131E-03 |
|---|
| regulation of centrosome cycle | GO:0046605 | | 2.121E-05 | 6.969E-03 |
|---|
| positive regulation of Rho GTPase activity | GO:0032321 | | 2.121E-05 | 6.098E-03 |
|---|
| induction of apoptosis by intracellular signals | GO:0008629 | | 2.782E-05 | 7.109E-03 |
|---|
| microtubule nucleation | GO:0007020 | | 3.179E-05 | 7.311E-03 |
|---|
| cGMP-mediated signaling | GO:0019934 | | 3.179E-05 | 6.646E-03 |
|---|
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| spindle organization | GO:0007051 | | 1.026E-07 | 2.359E-04 |
|---|
| microtubule cytoskeleton organization | GO:0000226 | | 1.38E-07 | 1.586E-04 |
|---|
| mitotic spindle organization | GO:0007052 | | 4.781E-07 | 3.665E-04 |
|---|
| Wnt receptor signaling pathway | GO:0016055 | | 7.867E-06 | 4.524E-03 |
|---|
| RNA export from nucleus | GO:0006405 | | 1.547E-05 | 7.115E-03 |
|---|
| negative regulation of protein ubiquitination | GO:0031397 | | 2.121E-05 | 8.131E-03 |
|---|
| regulation of centrosome cycle | GO:0046605 | | 2.121E-05 | 6.969E-03 |
|---|
| positive regulation of Rho GTPase activity | GO:0032321 | | 2.121E-05 | 6.098E-03 |
|---|
| induction of apoptosis by intracellular signals | GO:0008629 | | 2.782E-05 | 7.109E-03 |
|---|
| microtubule nucleation | GO:0007020 | | 3.179E-05 | 7.311E-03 |
|---|
| cGMP-mediated signaling | GO:0019934 | | 3.179E-05 | 6.646E-03 |
|---|
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| spindle organization | GO:0007051 | | 1.026E-07 | 2.359E-04 |
|---|
| microtubule cytoskeleton organization | GO:0000226 | | 1.38E-07 | 1.586E-04 |
|---|
| mitotic spindle organization | GO:0007052 | | 4.781E-07 | 3.665E-04 |
|---|
| Wnt receptor signaling pathway | GO:0016055 | | 7.867E-06 | 4.524E-03 |
|---|
| RNA export from nucleus | GO:0006405 | | 1.547E-05 | 7.115E-03 |
|---|
| negative regulation of protein ubiquitination | GO:0031397 | | 2.121E-05 | 8.131E-03 |
|---|
| regulation of centrosome cycle | GO:0046605 | | 2.121E-05 | 6.969E-03 |
|---|
| positive regulation of Rho GTPase activity | GO:0032321 | | 2.121E-05 | 6.098E-03 |
|---|
| induction of apoptosis by intracellular signals | GO:0008629 | | 2.782E-05 | 7.109E-03 |
|---|
| microtubule nucleation | GO:0007020 | | 3.179E-05 | 7.311E-03 |
|---|
| cGMP-mediated signaling | GO:0019934 | | 3.179E-05 | 6.646E-03 |
|---|
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| spindle organization | GO:0007051 | | 1.449E-07 | 3.437E-04 |
|---|
| microtubule cytoskeleton organization | GO:0000226 | | 1.849E-07 | 2.194E-04 |
|---|
| mitotic spindle organization | GO:0007052 | | 6.079E-07 | 4.808E-04 |
|---|
| Wnt receptor signaling pathway | GO:0016055 | | 1.198E-05 | 7.106E-03 |
|---|
| negative regulation of protein ubiquitination | GO:0031397 | | 2.047E-05 | 9.717E-03 |
|---|
| RNA export from nucleus | GO:0006405 | | 2.863E-05 | 0.01132222 |
|---|
| cGMP-mediated signaling | GO:0019934 | | 3.068E-05 | 0.01040192 |
|---|
| microtubule nucleation | GO:0007020 | | 3.068E-05 | 9.102E-03 |
|---|
| regulation of centrosome cycle | GO:0046605 | | 3.068E-05 | 8.09E-03 |
|---|
| positive regulation of Rho GTPase activity | GO:0032321 | | 3.068E-05 | 7.281E-03 |
|---|
| induction of apoptosis by intracellular signals | GO:0008629 | | 3.08E-05 | 6.644E-03 |
|---|
