Study run-a1

Study informations

119 subnetworks in total page | file

406 genes associated page | file

Enriched GO terms page

General informations

General Index page

Study Index page

Subnetwork 1211-1-real

score

Dataset	Score	P-val 1	P-val 2	P-val 3
Desmedt	0.2341	9.501e-03	1.135e-02	9.535e-02
IPC-NIBC-129	0.2436	7.620e-02	9.928e-02	5.848e-01
Ivshina_GPL96-GPL97	0.2508	5.106e-02	6.677e-02	6.048e-01
Loi_GPL570	0.1656	6.709e-02	6.664e-02	3.152e-01
Loi_GPL96-GPL97	0.1716	5.200e-05	2.800e-04	8.730e-04
Parker_GPL1390	0.2274	6.082e-02	5.792e-02	4.196e-01
Parker_GPL887	0.1211	5.759e-01	6.072e-01	6.211e-01
Pawitan_GPL96-GPL97	0.3395	2.292e-01	1.911e-01	7.876e-01
Schmidt	0.2152	1.903e-02	2.641e-02	2.113e-01
Sotiriou	0.2758	1.888e-03	5.070e-04	5.080e-02
Wang	0.1586	9.187e-02	6.229e-02	3.457e-01
Zhang	0.1886	1.421e-01	9.974e-02	3.257e-01
Zhou	0.4297	7.449e-02	8.022e-02	4.442e-01

Expression data for subnetwork 1211-1-real in each dataset

Desmedt | IPC-NIBC-129 | Ivshina_GPL96-GPL97 | Loi_GPL570 | Loi_GPL96-GPL97 | Parker_GPL1390 | Parker_GPL887 | Pawitan_GPL96-GPL97 | Schmidt | Sotiriou | Wang | Zhang | Zhou |

Subnetwork structure for each dataset

Desmedt IPC-NIBC-129 Ivshina_GPL96-GPL97 Loi_GPL570 Loi_GPL96-GPL97 Parker_GPL1390 Parker_GPL887 Pawitan_GPL96-GPL97 Schmidt Sotiriou Wang Zhang Zhou

Desmedt

Score for each gene in subnetwork 1211-1-real in each dataset

Gene Symbol	Links	Frequency	Frequency Rank	Subnetwork score rank	Global rank	Desmedt	IPC-NIBC-129	Ivshina_GPL96-GPL97	Loi_GPL570	Loi_GPL96-GPL97	Parker_GPL1390	Parker_GPL887	Pawitan_GPL96-GPL97	Schmidt	Sotiriou	Wang	Zhang	Zhou
ccnb2		16	13	153	125	0.164	0.176	0.204	0.123	0.172	0.178	0.090	0.366	0.240	0.169	0.144	0.211	0.463
cltc		3	79	330	311	0.075	0.118	0.075	0.072	0.176	0.002	-0.125	0.213	-0.013	0.095	0.108	-0.025	0.294
stmn2		29	8	1	3	0.057	0.106	0.005	0.052	0.110	0.071	-0.099	0.006	0.034	0.103	0.075	0.113	-0.039
tle1		23	9	78	60	0.062	0.235	-0.032	-0.177	0.033	0.085	0.339	0.068	0.126	-0.027	-0.028	0.068	0.025
cltb		3	79	330	311	-0.002	0.119	0.171	0.109	0.083	0.160	-0.334	0.074	0.056	0.073	0.089	-0.007	0.223
krt18		15	15	230	195	0.112	-0.078	0.147	0.150	0.161	-0.086	-0.204	0.083	-0.099	0.118	0.086	-0.114	0.222
ccnd1		102	2	1	2	0.127	-0.183	0.062	0.190	0.157	-0.002	-0.190	0.105	-0.107	0.174	0.106	0.144	0.290
cks2		44	6	73	54	0.050	0.233	0.170	0.103	0.186	0.172	0.093	0.167	0.263	0.151	0.145	0.284	0.383
cdc2		103	1	1	1	0.073	0.247	0.206	0.172	0.247	0.153	-0.131	0.282	0.226	0.221	0.067	0.297	0.336
clta		1	164	389	389	-0.038	0.182	0.090	0.189	0.083	0.171	-0.246	0.209	0.003	0.005	-0.015	-0.048	0.168
hgs		2	104	282	271	0.150	0.114	0.088	-0.153	0.105	0.240	0.016	0.062	0.053	0.067	-0.035	-0.054	0.330

GO Enrichment output for subnetwork 1211-1-real in each dataset

Desmedt file

Name	Accession Number	Link	P-val	Corrected P-val
positive regulation of cyclin-dependent protein kinase activity	GO:0045737		2.876E-05	0.06614014
negative regulation of JAK-STAT cascade	GO:0046426		2.876E-05	0.03307007
regulation of cyclin-dependent protein kinase activity	GO:0000079		2.998E-05	0.02298217
thymus development	GO:0048538		4.923E-05	0.02830472
T cell homeostasis	GO:0043029		7.51E-05	0.03454455
lymphocyte homeostasis	GO:0002260		1.063E-04	0.04076626
cellular response to unfolded protein	GO:0034620		1.633E-04	0.053641
post-Golgi vesicle-mediated transport	GO:0006892		2.078E-04	0.0597566
response to endoplasmic reticulum stress	GO:0034976		2.847E-04	0.07274741
negative regulation of Wnt receptor signaling pathway	GO:0030178		2.847E-04	0.06547267
leukocyte homeostasis	GO:0001776		3.129E-04	0.06542527

IPC-NIBC-129 file

Name	Accession Number	Link	P-val	Corrected P-val
regulation of cyclin-dependent protein kinase activity	GO:0000079		9.903E-06	0.02419234
tumor necrosis factor-mediated signaling pathway	GO:0033209		1.078E-05	0.01316825
Golgi to plasma membrane transport	GO:0006893		1.078E-05	8.779E-03
negative regulation of JAK-STAT cascade	GO:0046426		1.078E-05	6.584E-03
positive regulation of cyclin-dependent protein kinase activity	GO:0045737		1.437E-05	7.02E-03
thymus development	GO:0048538		2.818E-05	0.01147541
T cell homeostasis	GO:0043029		3.381E-05	0.01179797
lymphocyte homeostasis	GO:0002260		5.371E-05	0.01640114
cellular response to unfolded protein	GO:0034620		9.697E-05	0.02632138
negative regulation of Wnt receptor signaling pathway	GO:0030178		1.289E-04	0.03150154
post-Golgi vesicle-mediated transport	GO:0006892		1.406E-04	0.03122715

Ivshina_GPL96-GPL97 file

Name	Accession Number	Link	P-val	Corrected P-val
tumor necrosis factor-mediated signaling pathway	GO:0033209		1.386E-05	0.03333891
Golgi to plasma membrane transport	GO:0006893		1.386E-05	0.01666945
negative regulation of JAK-STAT cascade	GO:0046426		1.386E-05	0.01111297
regulation of cyclin-dependent protein kinase activity	GO:0000079		1.435E-05	8.633E-03
positive regulation of cyclin-dependent protein kinase activity	GO:0045737		1.847E-05	8.886E-03
thymus development	GO:0048538		3.622E-05	0.01452309
T cell homeostasis	GO:0043029		4.344E-05	0.01493043
lymphocyte homeostasis	GO:0002260		6.9E-05	0.02075212
cellular response to unfolded protein	GO:0034620		1.121E-04	0.02998006
negative regulation of Wnt receptor signaling pathway	GO:0030178		1.376E-04	0.03310215
post-Golgi vesicle-mediated transport	GO:0006892		1.805E-04	0.03949029

Loi_GPL570 file

Name	Accession Number	Link	P-val	Corrected P-val
regulation of cyclin-dependent protein kinase activity	GO:0000079		9.903E-06	0.02419234
tumor necrosis factor-mediated signaling pathway	GO:0033209		1.078E-05	0.01316825
Golgi to plasma membrane transport	GO:0006893		1.078E-05	8.779E-03
negative regulation of JAK-STAT cascade	GO:0046426		1.078E-05	6.584E-03
positive regulation of cyclin-dependent protein kinase activity	GO:0045737		1.437E-05	7.02E-03
thymus development	GO:0048538		2.818E-05	0.01147541
T cell homeostasis	GO:0043029		3.381E-05	0.01179797
lymphocyte homeostasis	GO:0002260		5.371E-05	0.01640114
cellular response to unfolded protein	GO:0034620		9.697E-05	0.02632138
negative regulation of Wnt receptor signaling pathway	GO:0030178		1.289E-04	0.03150154
post-Golgi vesicle-mediated transport	GO:0006892		1.406E-04	0.03122715

Loi_GPL96-GPL97 file

Name	Accession Number	Link	P-val	Corrected P-val
tumor necrosis factor-mediated signaling pathway	GO:0033209		1.386E-05	0.03333891
Golgi to plasma membrane transport	GO:0006893		1.386E-05	0.01666945
negative regulation of JAK-STAT cascade	GO:0046426		1.386E-05	0.01111297
regulation of cyclin-dependent protein kinase activity	GO:0000079		1.435E-05	8.633E-03
positive regulation of cyclin-dependent protein kinase activity	GO:0045737		1.847E-05	8.886E-03
thymus development	GO:0048538		3.622E-05	0.01452309
T cell homeostasis	GO:0043029		4.344E-05	0.01493043
lymphocyte homeostasis	GO:0002260		6.9E-05	0.02075212
cellular response to unfolded protein	GO:0034620		1.121E-04	0.02998006
negative regulation of Wnt receptor signaling pathway	GO:0030178		1.376E-04	0.03310215
post-Golgi vesicle-mediated transport	GO:0006892		1.805E-04	0.03949029

Parker_GPL1390 file

Name	Accession Number	Link	P-val	Corrected P-val
clathrin coat of coated pit	GO:0030132		4.578E-11	1.635E-07
clathrin coat of trans-Golgi network vesicle	GO:0030130		1.198E-10	2.139E-07
trans-Golgi network transport vesicle membrane	GO:0012510		1.796E-10	2.138E-07
clathrin vesicle coat	GO:0030125		6.591E-10	5.884E-07
transport vesicle membrane	GO:0030658		1.107E-09	7.906E-07
trans-Golgi network transport vesicle	GO:0030140		2.162E-09	1.287E-06
clathrin coated vesicle membrane	GO:0030665		8.546E-09	4.36E-06
Golgi-associated vesicle membrane	GO:0030660		1.131E-08	5.049E-06
vesicle coat	GO:0030120		1.47E-08	5.831E-06
coated pit	GO:0005905		2.112E-08	7.543E-06
clathrin coat	GO:0030118		2.644E-08	8.585E-06

Parker_GPL887 file

Name	Accession Number	Link	P-val	Corrected P-val
clathrin coat of coated pit	GO:0030132		3.354E-11	1.224E-07
clathrin coat of trans-Golgi network vesicle	GO:0030130		8.777E-11	1.601E-07
trans-Golgi network transport vesicle membrane	GO:0012510		1.316E-10	1.6E-07
clathrin vesicle coat	GO:0030125		4.829E-10	4.404E-07
transport vesicle membrane	GO:0030658		8.112E-10	5.918E-07
trans-Golgi network transport vesicle	GO:0030140		1.027E-09	6.244E-07
clathrin coated vesicle membrane	GO:0030665		6.264E-09	3.264E-06
Golgi-associated vesicle membrane	GO:0030660		7.224E-09	3.294E-06
vesicle coat	GO:0030120		9.47E-09	3.839E-06
clathrin coat	GO:0030118		1.22E-08	4.451E-06
coated pit	GO:0005905		1.735E-08	5.755E-06

Pawitan_GPL96-GPL97 file

Name	Accession Number	Link	P-val	Corrected P-val
tumor necrosis factor-mediated signaling pathway	GO:0033209		1.386E-05	0.03333891
Golgi to plasma membrane transport	GO:0006893		1.386E-05	0.01666945
negative regulation of JAK-STAT cascade	GO:0046426		1.386E-05	0.01111297
regulation of cyclin-dependent protein kinase activity	GO:0000079		1.435E-05	8.633E-03
positive regulation of cyclin-dependent protein kinase activity	GO:0045737		1.847E-05	8.886E-03
thymus development	GO:0048538		3.622E-05	0.01452309
T cell homeostasis	GO:0043029		4.344E-05	0.01493043
lymphocyte homeostasis	GO:0002260		6.9E-05	0.02075212
cellular response to unfolded protein	GO:0034620		1.121E-04	0.02998006
negative regulation of Wnt receptor signaling pathway	GO:0030178		1.376E-04	0.03310215
post-Golgi vesicle-mediated transport	GO:0006892		1.805E-04	0.03949029

Schmidt file

Name	Accession Number	Link	P-val	Corrected P-val
positive regulation of cyclin-dependent protein kinase activity	GO:0045737		2.876E-05	0.06614014
negative regulation of JAK-STAT cascade	GO:0046426		2.876E-05	0.03307007
regulation of cyclin-dependent protein kinase activity	GO:0000079		2.998E-05	0.02298217
thymus development	GO:0048538		4.923E-05	0.02830472
T cell homeostasis	GO:0043029		7.51E-05	0.03454455
lymphocyte homeostasis	GO:0002260		1.063E-04	0.04076626
cellular response to unfolded protein	GO:0034620		1.633E-04	0.053641
post-Golgi vesicle-mediated transport	GO:0006892		2.078E-04	0.0597566
response to endoplasmic reticulum stress	GO:0034976		2.847E-04	0.07274741
negative regulation of Wnt receptor signaling pathway	GO:0030178		2.847E-04	0.06547267
leukocyte homeostasis	GO:0001776		3.129E-04	0.06542527

Sotiriou file

Name	Accession Number	Link	P-val	Corrected P-val
positive regulation of cyclin-dependent protein kinase activity	GO:0045737		2.876E-05	0.06614014
negative regulation of JAK-STAT cascade	GO:0046426		2.876E-05	0.03307007
regulation of cyclin-dependent protein kinase activity	GO:0000079		2.998E-05	0.02298217
thymus development	GO:0048538		4.923E-05	0.02830472
T cell homeostasis	GO:0043029		7.51E-05	0.03454455
lymphocyte homeostasis	GO:0002260		1.063E-04	0.04076626
cellular response to unfolded protein	GO:0034620		1.633E-04	0.053641
post-Golgi vesicle-mediated transport	GO:0006892		2.078E-04	0.0597566
response to endoplasmic reticulum stress	GO:0034976		2.847E-04	0.07274741
negative regulation of Wnt receptor signaling pathway	GO:0030178		2.847E-04	0.06547267
leukocyte homeostasis	GO:0001776		3.129E-04	0.06542527

Wang file

Name	Accession Number	Link	P-val	Corrected P-val
positive regulation of cyclin-dependent protein kinase activity	GO:0045737		2.876E-05	0.06614014
negative regulation of JAK-STAT cascade	GO:0046426		2.876E-05	0.03307007
regulation of cyclin-dependent protein kinase activity	GO:0000079		2.998E-05	0.02298217
thymus development	GO:0048538		4.923E-05	0.02830472
T cell homeostasis	GO:0043029		7.51E-05	0.03454455
lymphocyte homeostasis	GO:0002260		1.063E-04	0.04076626
cellular response to unfolded protein	GO:0034620		1.633E-04	0.053641
post-Golgi vesicle-mediated transport	GO:0006892		2.078E-04	0.0597566
response to endoplasmic reticulum stress	GO:0034976		2.847E-04	0.07274741
negative regulation of Wnt receptor signaling pathway	GO:0030178		2.847E-04	0.06547267
leukocyte homeostasis	GO:0001776		3.129E-04	0.06542527

Zhang file

Name	Accession Number	Link	P-val	Corrected P-val
positive regulation of cyclin-dependent protein kinase activity	GO:0045737		2.876E-05	0.06614014
negative regulation of JAK-STAT cascade	GO:0046426		2.876E-05	0.03307007
regulation of cyclin-dependent protein kinase activity	GO:0000079		2.998E-05	0.02298217
thymus development	GO:0048538		4.923E-05	0.02830472
T cell homeostasis	GO:0043029		7.51E-05	0.03454455
lymphocyte homeostasis	GO:0002260		1.063E-04	0.04076626
cellular response to unfolded protein	GO:0034620		1.633E-04	0.053641
post-Golgi vesicle-mediated transport	GO:0006892		2.078E-04	0.0597566
response to endoplasmic reticulum stress	GO:0034976		2.847E-04	0.07274741
negative regulation of Wnt receptor signaling pathway	GO:0030178		2.847E-04	0.06547267
leukocyte homeostasis	GO:0001776		3.129E-04	0.06542527

Zhou file

Name	Accession Number	Link	P-val	Corrected P-val
positive regulation of cyclin-dependent protein kinase activity	GO:0045737		3.173E-05	0.07530661
regulation of cyclin-dependent protein kinase activity	GO:0000079		3.943E-05	0.04678625
negative regulation of JAK-STAT cascade	GO:0046426		4.228E-05	0.03344381
thymus development	GO:0048538		8.286E-05	0.04915606
T cell homeostasis	GO:0043029		9.935E-05	0.04715345
lymphocyte homeostasis	GO:0002260		1.577E-04	0.06236964
post-Golgi vesicle-mediated transport	GO:0006892		2.293E-04	0.0777185
cellular response to unfolded protein	GO:0034620		2.293E-04	0.06800369
negative regulation of Wnt receptor signaling pathway	GO:0030178		3.139E-04	0.08277588
response to endoplasmic reticulum stress	GO:0034976		4.117E-04	0.097686
leukocyte homeostasis	GO:0001776		4.471E-04	0.09645333