Study run-a1
Study informations
119 subnetworks in total page | file
406 genes associated page | file
Enriched GO terms page
General informations
General Index page
Study Index page
Subnetwork 11316-0-real
score
| Dataset | Score | P-val 1 | P-val 2 | P-val 3 |
|---|
| Desmedt | 0.2312 | 7.381e-03 | 8.803e-03 | 7.875e-02 |
|---|
| IPC-NIBC-129 | 0.2533 | 4.941e-02 | 6.285e-02 | 4.488e-01 |
|---|
| Ivshina_GPL96-GPL97 | 0.2630 | 1.021e-02 | 1.568e-02 | 2.665e-01 |
|---|
| Loi_GPL570 | 0.2420 | 5.879e-02 | 5.838e-02 | 2.868e-01 |
|---|
| Loi_GPL96-GPL97 | 0.1593 | 3.100e-05 | 1.770e-04 | 4.150e-04 |
|---|
| Parker_GPL1390 | 0.2591 | 6.339e-02 | 6.061e-02 | 4.290e-01 |
|---|
| Parker_GPL887 | 0.0423 | 8.702e-01 | 8.836e-01 | 9.166e-01 |
|---|
| Pawitan_GPL96-GPL97 | 0.4192 | 1.584e-01 | 1.247e-01 | 6.683e-01 |
|---|
| Schmidt | 0.2228 | 6.829e-03 | 9.917e-03 | 9.684e-02 |
|---|
| Sotiriou | 0.3384 | 1.862e-03 | 4.980e-04 | 5.028e-02 |
|---|
| Wang | 0.1154 | 1.119e-01 | 7.844e-02 | 3.931e-01 |
|---|
| Zhang | 0.2259 | 2.596e-01 | 2.049e-01 | 5.254e-01 |
|---|
| Zhou | 0.4306 | 3.467e-02 | 3.460e-02 | 2.237e-01 |
|---|
Expression data for subnetwork 11316-0-real in each dataset
Desmedt |
IPC-NIBC-129 |
Ivshina_GPL96-GPL97 |
Loi_GPL570 |
Loi_GPL96-GPL97 |
Parker_GPL1390 |
Parker_GPL887 |
Pawitan_GPL96-GPL97 |
Schmidt |
Sotiriou |
Wang |
Zhang |
Zhou |
Subnetwork structure for each dataset
- Desmedt
Score for each gene in subnetwork 11316-0-real in each dataset
| Gene Symbol | Links | Frequency | Frequency Rank | Subnetwork score rank | Global rank |
Desmedt | IPC-NIBC-129 | Ivshina_GPL96-GPL97 | Loi_GPL570 | Loi_GPL96-GPL97 | Parker_GPL1390 | Parker_GPL887 | Pawitan_GPL96-GPL97 | Schmidt | Sotiriou | Wang | Zhang | Zhou |
|---|
| stmn2 |   | 29 | 8 | 1 | 3 | 0.057 | 0.106 | 0.005 | 0.052 | 0.110 | 0.071 | -0.099 | 0.006 | 0.034 | 0.103 | 0.075 | 0.113 | -0.039 |
|---|
| cdkn1a | | 70 | 3 | 73 | 51 | 0.115 | -0.020 | 0.065 | 0.082 | 0.099 | 0.124 | 0.055 | 0.087 | 0.068 | 0.144 | 0.015 | -0.201 | 0.069 |
|---|
| tle1 | | 23 | 9 | 78 | 60 | 0.062 | 0.235 | -0.032 | -0.177 | 0.033 | 0.085 | 0.339 | 0.068 | 0.126 | -0.027 | -0.028 | 0.068 | 0.025 |
|---|
| cope | | 1 | 164 | 253 | 255 | 0.095 | -0.013 | 0.169 | 0.138 | 0.126 | 0.099 | 0.046 | 0.240 | -0.070 | 0.045 | -0.055 | 0.008 | 0.176 |
|---|
| ccnb1 | | 36 | 7 | 78 | 59 | 0.082 | 0.246 | 0.212 | 0.224 | 0.256 | 0.099 | 0.126 | 0.351 | 0.129 | 0.249 | 0.152 | 0.167 | 0.398 |
|---|
| arf1 | | 2 | 104 | 100 | 103 | 0.106 | 0.093 | 0.086 | -0.009 | 0.138 | 0.083 | 0.320 | 0.281 | -0.012 | 0.175 | 0.016 | -0.071 | 0.217 |
|---|
| ccnd1 | | 102 | 2 | 1 | 2 | 0.127 | -0.183 | 0.062 | 0.190 | 0.157 | -0.002 | -0.190 | 0.105 | -0.107 | 0.174 | 0.106 | 0.144 | 0.290 |
|---|
| tsc1 | | 47 | 5 | 17 | 8 | 0.049 | 0.012 | -0.055 | 0.072 | 0.055 | -0.144 | -0.242 | -0.196 | 0.006 | 0.010 | 0.043 | -0.007 | 0.207 |
|---|
| map4 | | 16 | 13 | 73 | 55 | 0.002 | 0.046 | 0.067 | -0.043 | 0.034 | 0.119 | 0.159 | -0.058 | -0.020 | 0.043 | 0.108 | -0.074 | 0.302 |
|---|
| cdc2 | | 103 | 1 | 1 | 1 | 0.073 | 0.247 | 0.206 | 0.172 | 0.247 | 0.153 | -0.131 | 0.282 | 0.226 | 0.221 | 0.067 | 0.297 | 0.336 |
|---|
| sfn | | 50 | 4 | 29 | 17 | 0.077 | 0.137 | 0.111 | 0.172 | 0.112 | 0.119 | 0.141 | 0.219 | 0.100 | 0.147 | 0.025 | 0.079 | 0.181 |
|---|
| top2a | | 11 | 21 | 93 | 76 | 0.147 | 0.183 | 0.185 | 0.100 | 0.206 | 0.014 | 0.035 | 0.309 | 0.261 | 0.183 | 0.072 | 0.234 | 0.273 |
|---|
| eif2s1 | | 14 | 17 | 73 | 57 | -0.031 | 0.151 | 0.253 | 0.182 | 0.098 | 0.167 | 0.005 | 0.270 | 0.233 | 0.038 | 0.122 | 0.239 | 0.265 |
|---|
| npm1 | | 4 | 60 | 44 | 41 | -0.005 | 0.172 | 0.085 | 0.197 | 0.093 | 0.221 | -0.227 | -0.050 | 0.065 | 0.169 | -0.000 | -0.086 | 0.199 |
|---|
GO Enrichment output for subnetwork 11316-0-real in each dataset
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of centrosome cycle | GO:0046605 |  | 4.039E-11 | 9.289E-08 |
|---|
| regulation of microtubule cytoskeleton organization | GO:0070507 | | 8.007E-10 | 9.208E-07 |
|---|
| regulation of microtubule-based process | GO:0032886 | | 1.726E-09 | 1.323E-06 |
|---|
| ribosome assembly | GO:0042255 | | 2.646E-09 | 1.521E-06 |
|---|
| centrosome cycle | GO:0007098 | | 1.089E-08 | 5.01E-06 |
|---|
| regulation of cytoskeleton organization | GO:0051493 | | 1.273E-08 | 4.881E-06 |
|---|
| cell aging | GO:0007569 | | 4.74E-08 | 1.557E-05 |
|---|
| microtubule organizing center organization | GO:0031023 | | 5.786E-08 | 1.663E-05 |
|---|
| negative regulation of organelle organization | GO:0010639 | | 1.609E-07 | 4.111E-05 |
|---|
| positive regulation of NF-kappaB transcription factor activity | GO:0051092 | | 2.146E-07 | 4.936E-05 |
|---|
| positive regulation of transcription factor activity | GO:0051091 | | 4.579E-07 | 9.575E-05 |
|---|
IPC-NIBC-129 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of centrosome cycle | GO:0046605 | | 7.609E-12 | 1.859E-08 |
|---|
| regulation of microtubule cytoskeleton organization | GO:0070507 | | 2.636E-10 | 3.219E-07 |
|---|
| regulation of microtubule-based process | GO:0032886 | | 6.727E-10 | 5.478E-07 |
|---|
| ribosome assembly | GO:0042255 | | 1.512E-09 | 9.234E-07 |
|---|
| centrosome cycle | GO:0007098 | | 4.606E-09 | 2.251E-06 |
|---|
| cell aging | GO:0007569 | | 1.097E-08 | 4.469E-06 |
|---|
| microtubule organizing center organization | GO:0031023 | | 2.236E-08 | 7.802E-06 |
|---|
| negative regulation of organelle organization | GO:0010639 | | 3.578E-08 | 1.093E-05 |
|---|
| positive regulation of NF-kappaB transcription factor activity | GO:0051092 | | 5.35E-08 | 1.452E-05 |
|---|
| COPI coating of Golgi vesicle | GO:0048205 | | 1.7E-07 | 4.153E-05 |
|---|
| positive regulation of transcription factor activity | GO:0051091 | | 1.819E-07 | 4.041E-05 |
|---|
Ivshina_GPL96-GPL97 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of centrosome cycle | GO:0046605 | | 1.332E-11 | 3.205E-08 |
|---|
| regulation of microtubule cytoskeleton organization | GO:0070507 | | 3.699E-10 | 4.45E-07 |
|---|
| regulation of microtubule-based process | GO:0032886 | | 1.005E-09 | 8.062E-07 |
|---|
| ribosome assembly | GO:0042255 | | 1.89E-09 | 1.137E-06 |
|---|
| centrosome cycle | GO:0007098 | | 8.051E-09 | 3.874E-06 |
|---|
| cell aging | GO:0007569 | | 1.57E-08 | 6.296E-06 |
|---|
| microtubule organizing center organization | GO:0031023 | | 3.903E-08 | 1.342E-05 |
|---|
| negative regulation of organelle organization | GO:0010639 | | 6.27E-08 | 1.886E-05 |
|---|
| positive regulation of NF-kappaB transcription factor activity | GO:0051092 | | 9.335E-08 | 2.496E-05 |
|---|
| COPI coating of Golgi vesicle | GO:0048205 | | 2.588E-07 | 6.226E-05 |
|---|
| positive regulation of transcription factor activity | GO:0051091 | | 2.878E-07 | 6.295E-05 |
|---|
Loi_GPL570 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of centrosome cycle | GO:0046605 | | 7.609E-12 | 1.859E-08 |
|---|
| regulation of microtubule cytoskeleton organization | GO:0070507 | | 2.636E-10 | 3.219E-07 |
|---|
| regulation of microtubule-based process | GO:0032886 | | 6.727E-10 | 5.478E-07 |
|---|
| ribosome assembly | GO:0042255 | | 1.512E-09 | 9.234E-07 |
|---|
| centrosome cycle | GO:0007098 | | 4.606E-09 | 2.251E-06 |
|---|
| cell aging | GO:0007569 | | 1.097E-08 | 4.469E-06 |
|---|
| microtubule organizing center organization | GO:0031023 | | 2.236E-08 | 7.802E-06 |
|---|
| negative regulation of organelle organization | GO:0010639 | | 3.578E-08 | 1.093E-05 |
|---|
| positive regulation of NF-kappaB transcription factor activity | GO:0051092 | | 5.35E-08 | 1.452E-05 |
|---|
| COPI coating of Golgi vesicle | GO:0048205 | | 1.7E-07 | 4.153E-05 |
|---|
| positive regulation of transcription factor activity | GO:0051091 | | 1.819E-07 | 4.041E-05 |
|---|
Loi_GPL96-GPL97 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of centrosome cycle | GO:0046605 | | 1.332E-11 | 3.205E-08 |
|---|
| regulation of microtubule cytoskeleton organization | GO:0070507 | | 3.699E-10 | 4.45E-07 |
|---|
| regulation of microtubule-based process | GO:0032886 | | 1.005E-09 | 8.062E-07 |
|---|
| ribosome assembly | GO:0042255 | | 1.89E-09 | 1.137E-06 |
|---|
| centrosome cycle | GO:0007098 | | 8.051E-09 | 3.874E-06 |
|---|
| cell aging | GO:0007569 | | 1.57E-08 | 6.296E-06 |
|---|
| microtubule organizing center organization | GO:0031023 | | 3.903E-08 | 1.342E-05 |
|---|
| negative regulation of organelle organization | GO:0010639 | | 6.27E-08 | 1.886E-05 |
|---|
| positive regulation of NF-kappaB transcription factor activity | GO:0051092 | | 9.335E-08 | 2.496E-05 |
|---|
| COPI coating of Golgi vesicle | GO:0048205 | | 2.588E-07 | 6.226E-05 |
|---|
| positive regulation of transcription factor activity | GO:0051091 | | 2.878E-07 | 6.295E-05 |
|---|
Parker_GPL1390 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| cyclin-dependent protein kinase holoenzyme complex | GO:0000307 | | 2.997E-08 | 1.07E-04 |
|---|
| COPI coating of Golgi vesicle | GO:0048205 | | 6.416E-08 | 1.146E-04 |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 8.202E-08 | 9.763E-05 |
|---|
| Golgi vesicle budding | GO:0048194 | | 8.818E-08 | 7.872E-05 |
|---|
| cyclin-dependent protein kinase regulator activity | GO:0016538 | | 8.818E-08 | 6.298E-05 |
|---|
| vesicle targeting. to. from or within Golgi | GO:0048199 | | 1.175E-07 | 6.994E-05 |
|---|
| protein serine/threonine kinase inhibitor activity | GO:0030291 | | 1.942E-07 | 9.908E-05 |
|---|
| protein kinase regulator activity | GO:0019887 | | 2.247E-07 | 1.003E-04 |
|---|
| vesicle coating | GO:0006901 | | 2.427E-07 | 9.628E-05 |
|---|
| G2/M transition of mitotic cell cycle | GO:0000086 | | 3.623E-07 | 1.294E-04 |
|---|
| retrograde vesicle-mediated transport. Golgi to ER | GO:0006890 | | 3.623E-07 | 1.176E-04 |
|---|
Parker_GPL887 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| cyclin-dependent protein kinase holoenzyme complex | GO:0000307 | | 2.861E-08 | 1.044E-04 |
|---|
| COPI coating of Golgi vesicle | GO:0048205 | | 6.125E-08 | 1.117E-04 |
|---|
| Golgi vesicle budding | GO:0048194 | | 8.417E-08 | 1.024E-04 |
|---|
| regulation of cyclin-dependent protein kinase activity | GO:0000079 | | 8.679E-08 | 7.916E-05 |
|---|
| vesicle targeting. to. from or within Golgi | GO:0048199 | | 1.122E-07 | 8.184E-05 |
|---|
| cyclin-dependent protein kinase regulator activity | GO:0016538 | | 1.854E-07 | 1.127E-04 |
|---|
| vesicle coating | GO:0006901 | | 2.316E-07 | 1.207E-04 |
|---|
| protein kinase regulator activity | GO:0019887 | | 2.484E-07 | 1.133E-04 |
|---|
| protein serine/threonine kinase inhibitor activity | GO:0030291 | | 2.849E-07 | 1.155E-04 |
|---|
| G2/M transition of mitotic cell cycle | GO:0000086 | | 2.849E-07 | 1.039E-04 |
|---|
| membrane budding | GO:0006900 | | 2.849E-07 | 9.449E-05 |
|---|
Pawitan_GPL96-GPL97 file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of centrosome cycle | GO:0046605 | | 1.332E-11 | 3.205E-08 |
|---|
| regulation of microtubule cytoskeleton organization | GO:0070507 | | 3.699E-10 | 4.45E-07 |
|---|
| regulation of microtubule-based process | GO:0032886 | | 1.005E-09 | 8.062E-07 |
|---|
| ribosome assembly | GO:0042255 | | 1.89E-09 | 1.137E-06 |
|---|
| centrosome cycle | GO:0007098 | | 8.051E-09 | 3.874E-06 |
|---|
| cell aging | GO:0007569 | | 1.57E-08 | 6.296E-06 |
|---|
| microtubule organizing center organization | GO:0031023 | | 3.903E-08 | 1.342E-05 |
|---|
| negative regulation of organelle organization | GO:0010639 | | 6.27E-08 | 1.886E-05 |
|---|
| positive regulation of NF-kappaB transcription factor activity | GO:0051092 | | 9.335E-08 | 2.496E-05 |
|---|
| COPI coating of Golgi vesicle | GO:0048205 | | 2.588E-07 | 6.226E-05 |
|---|
| positive regulation of transcription factor activity | GO:0051091 | | 2.878E-07 | 6.295E-05 |
|---|
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of centrosome cycle | GO:0046605 | | 4.039E-11 | 9.289E-08 |
|---|
| regulation of microtubule cytoskeleton organization | GO:0070507 | | 8.007E-10 | 9.208E-07 |
|---|
| regulation of microtubule-based process | GO:0032886 | | 1.726E-09 | 1.323E-06 |
|---|
| ribosome assembly | GO:0042255 | | 2.646E-09 | 1.521E-06 |
|---|
| centrosome cycle | GO:0007098 | | 1.089E-08 | 5.01E-06 |
|---|
| regulation of cytoskeleton organization | GO:0051493 | | 1.273E-08 | 4.881E-06 |
|---|
| cell aging | GO:0007569 | | 4.74E-08 | 1.557E-05 |
|---|
| microtubule organizing center organization | GO:0031023 | | 5.786E-08 | 1.663E-05 |
|---|
| negative regulation of organelle organization | GO:0010639 | | 1.609E-07 | 4.111E-05 |
|---|
| positive regulation of NF-kappaB transcription factor activity | GO:0051092 | | 2.146E-07 | 4.936E-05 |
|---|
| positive regulation of transcription factor activity | GO:0051091 | | 4.579E-07 | 9.575E-05 |
|---|
Sotiriou file
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of centrosome cycle | GO:0046605 | | 4.039E-11 | 9.289E-08 |
|---|
| regulation of microtubule cytoskeleton organization | GO:0070507 | | 8.007E-10 | 9.208E-07 |
|---|
| regulation of microtubule-based process | GO:0032886 | | 1.726E-09 | 1.323E-06 |
|---|
| ribosome assembly | GO:0042255 | | 2.646E-09 | 1.521E-06 |
|---|
| centrosome cycle | GO:0007098 | | 1.089E-08 | 5.01E-06 |
|---|
| regulation of cytoskeleton organization | GO:0051493 | | 1.273E-08 | 4.881E-06 |
|---|
| cell aging | GO:0007569 | | 4.74E-08 | 1.557E-05 |
|---|
| microtubule organizing center organization | GO:0031023 | | 5.786E-08 | 1.663E-05 |
|---|
| negative regulation of organelle organization | GO:0010639 | | 1.609E-07 | 4.111E-05 |
|---|
| positive regulation of NF-kappaB transcription factor activity | GO:0051092 | | 2.146E-07 | 4.936E-05 |
|---|
| positive regulation of transcription factor activity | GO:0051091 | | 4.579E-07 | 9.575E-05 |
|---|
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of centrosome cycle | GO:0046605 | | 4.039E-11 | 9.289E-08 |
|---|
| regulation of microtubule cytoskeleton organization | GO:0070507 | | 8.007E-10 | 9.208E-07 |
|---|
| regulation of microtubule-based process | GO:0032886 | | 1.726E-09 | 1.323E-06 |
|---|
| ribosome assembly | GO:0042255 | | 2.646E-09 | 1.521E-06 |
|---|
| centrosome cycle | GO:0007098 | | 1.089E-08 | 5.01E-06 |
|---|
| regulation of cytoskeleton organization | GO:0051493 | | 1.273E-08 | 4.881E-06 |
|---|
| cell aging | GO:0007569 | | 4.74E-08 | 1.557E-05 |
|---|
| microtubule organizing center organization | GO:0031023 | | 5.786E-08 | 1.663E-05 |
|---|
| negative regulation of organelle organization | GO:0010639 | | 1.609E-07 | 4.111E-05 |
|---|
| positive regulation of NF-kappaB transcription factor activity | GO:0051092 | | 2.146E-07 | 4.936E-05 |
|---|
| positive regulation of transcription factor activity | GO:0051091 | | 4.579E-07 | 9.575E-05 |
|---|
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of centrosome cycle | GO:0046605 | | 4.039E-11 | 9.289E-08 |
|---|
| regulation of microtubule cytoskeleton organization | GO:0070507 | | 8.007E-10 | 9.208E-07 |
|---|
| regulation of microtubule-based process | GO:0032886 | | 1.726E-09 | 1.323E-06 |
|---|
| ribosome assembly | GO:0042255 | | 2.646E-09 | 1.521E-06 |
|---|
| centrosome cycle | GO:0007098 | | 1.089E-08 | 5.01E-06 |
|---|
| regulation of cytoskeleton organization | GO:0051493 | | 1.273E-08 | 4.881E-06 |
|---|
| cell aging | GO:0007569 | | 4.74E-08 | 1.557E-05 |
|---|
| microtubule organizing center organization | GO:0031023 | | 5.786E-08 | 1.663E-05 |
|---|
| negative regulation of organelle organization | GO:0010639 | | 1.609E-07 | 4.111E-05 |
|---|
| positive regulation of NF-kappaB transcription factor activity | GO:0051092 | | 2.146E-07 | 4.936E-05 |
|---|
| positive regulation of transcription factor activity | GO:0051091 | | 4.579E-07 | 9.575E-05 |
|---|
| Name | Accession Number | Link | P-val | Corrected P-val |
|---|
| regulation of centrosome duplication | GO:0010824 | | 4.012E-11 | 9.521E-08 |
|---|
| regulation of centrosome cycle | GO:0046605 | | 1.202E-10 | 1.426E-07 |
|---|
| regulation of microtubule cytoskeleton organization | GO:0070507 | | 1.443E-09 | 1.142E-06 |
|---|
| regulation of microtubule-based process | GO:0032886 | | 2.87E-09 | 1.703E-06 |
|---|
| ribosome assembly | GO:0042255 | | 1.082E-08 | 5.134E-06 |
|---|
| centrosome cycle | GO:0007098 | | 1.441E-08 | 5.698E-06 |
|---|
| microtubule organizing center organization | GO:0031023 | | 6.948E-08 | 2.355E-05 |
|---|
| cell aging | GO:0007569 | | 8.327E-08 | 2.47E-05 |
|---|
| negative regulation of organelle organization | GO:0010639 | | 2.74E-07 | 7.225E-05 |
|---|
| positive regulation of NF-kappaB transcription factor activity | GO:0051092 | | 2.79E-07 | 6.621E-05 |
|---|
| positive regulation of transcription factor activity | GO:0051091 | | 5.685E-07 | 1.226E-04 |
|---|
